J. Wrabl

发表

Grouping of amino acid types and extraction of amino acid properties from multiple sequence alignments using variance maximization

James O. Wrabl, N. Grishin, J. Wrabl, 2005, Proteins.

Gaps in structurally similar proteins: Towards improvement of multiple sequence alignment

N. Grishin, J. Wrabl, James O. Wrabl, 2003, Proteins.

Ensemble allosteric model: energetic frustration within the intrinsically disordered glucocorticoid receptor

V. Hilser, J. Wrabl, Jordan T White, 2018, Philosophical Transactions of the Royal Society B: Biological Sciences.

The ensemble nature of allostery

V. Hilser, J. Wrabl, Jing Li, 2014, Nature.

Structural and energetic basis of allostery.

James O. Wrabl, V. Hilser, J. Wrabl, 2012, Annual review of biophysics.

The role of protein conformational fluctuations in allostery, function, and evolution.

James O. Wrabl, V. Hilser, J. Wrabl, 2011, Biophysical chemistry.

Genetically tunable frustration controls allostery in an intrinsically disordered transcription factor

Jing Li, Kaixian Liu, Vincent J Hilser, 2017, eLife.

A General Horizontal Alignment Tool for Shape Comparison of Diverse One-Dimensional Protein Data

James O. Wrabl, V. Hilser, J. Wrabl, 2013 .

Protein folding for realists: A timeless phenomenon

James O. Wrabl, D. Shortle, J. Wrabl, 1996, Protein science : a publication of the Protein Society.

Homology between O-linked GlcNAc transferases and proteins of the glycogen phosphorylase superfamily.

James O. Wrabl, N. Grishin, J. Wrabl, 2001, Journal of molecular biology.

Hidden dynamic signatures drive substrate selectivity in the disordered phosphoproteome

V. Hilser, J. Wrabl, Min-Hyung Cho, 2020, Proceedings of the National Academy of Sciences.

Hidden dynamic signatures drive substrate selectivity in the disordered phosphoproteome

V. Hilser, J. Wrabl, Min-Hyung Cho, 2019, Proceedings of the National Academy of Sciences.

Intrinsically Disordered Protein: A Thermodynamic Perspective

V. Hilser, J. Wrabl, Jing Li, 2015 .

Energetic profiling of protein folds.

James O. Wrabl, V. Hilser, J. Wrabl, 2009, Methods in enzymology.

A Thermodynamic Atlas of Proteomes Reveals Energetic Innovation across the Tree of Life

James O. Wrabl, V. Hilser, J. Wrabl, 2022, Molecular biology and evolution.

Correction: Genetically tunable frustration controls allostery in an intrinsically disordered transcription factor

V. Hilser, J. Wrabl, T. Schroer, 2018, eLife.

Simplified Novel Protein Design Using Thermodynamic Environments

V. Hilser, J. Wrabl, Mark L. Sowers, 2016 .

Conformational heterogeneity within the LID domain mediates substrate binding to Escherichia coli adenylate kinase: function follows fluctuations.

James O. Wrabl, V. Hilser, J. Wrabl, 2013, Topics in current chemistry.

The torsin-family AAA+ protein OOC-5 contains a critical disulfide adjacent to Sensor-II that couples redox state to nucleotide binding.

L. Rose, J. Wrabl, P. Thomas, 2008, Molecular biology of the cell.

A Horizontal Alignment Tool for Numerical Trend Discovery in Sequence Data: Application to Protein Hydropathy

James O. Wrabl, Vincent J. Hilser, Omar Hadzipasic, 2013, PLoS Comput. Biol..

Statistics of Random Protein Superpositions: p-Values for Pairwise Structure Alignment

Nick V. Grishin, James O. Wrabl, N. Grishin, 2008, J. Comput. Biol..

Correlation between changes in nuclear magnetic resonance order parameters and conformational entropy: Molecular dynamics simulations of native and denatured staphylococcal nuclease

D. Shortle, J. Wrabl, T. Woolf, 2000, Proteins.

Dynamic allostery can drive cold adaptation in enzymes

V. Hilser, J. Wrabl, Jing Li, 2018, Nature.

Investigating Homology between Proteins using Energetic Profiles

James O. Wrabl, Vincent J. Hilser, V. Hilser, 2010, PLoS Comput. Biol..

An energetic representation of protein architecture that is independent of primary and secondary structure.

James O. Wrabl, V. Hilser, J. Wrabl, 2009, Biophysical journal.

The role of negative selection in protein evolution revealed through the energetics of the native state ensemble

James O. Wrabl, Jordan Hoffmann, V. Hilser, 2016, Proteins.

Networked Communication between Polymerase and Exonuclease Active Sites in Human Mitochondrial DNA Polymerase.

J. Wrabl, Mark L. Sowers, Y. Yin, 2019, Journal of the American Chemical Society.

CASP5 assessment of fold recognition target predictions

Lisa N Kinch, Nick V Grishin, Jimin Pei, 2003, Proteins.

Conserved allosteric ensembles in a disordered protein using TROSY/Anti-TROSY R2-filtered spectroscopy.

James O. Wrabl, V. Hilser, J. Wrabl, 2021, Biophysical journal.

A cell-free antigen processing system informs HIV-1 epitope selection and vaccine design.

James O. Wrabl, R. Siliciano, J. Siliciano, 2023, The Journal of experimental medicine.

Tumor susceptibility gene-101 regulates glucocorticoid receptor through disorder-mediated allostery

James O. Wrabl, V. Hilser, J. Wrabl, 2020, bioRxiv.

Dynamic allostery can drive cold adaptation in enzymes

V. Hilser, J. Wrabl, Jing Li, 2018, Nature.

Perturbations of the denatured state ensemble: Modeling their effects on protein stability and folding kinetics

James O. Wrabl, D. Shortle, J. Wrabl, 1996, Protein science : a publication of the Protein Society.

Thermodynamic propensities of amino acids in the native state ensemble: Implications for fold recognition

James O. Wrabl, V. Hilser, J. Wrabl, 2001, Protein science : a publication of the Protein Society.

A Predictive Energy Landscape Model of Metamorphic Protein Conformational Specificity

James O. Wrabl, V. Hilser, J. Wrabl, 2021, bioRxiv.

A model of the changes in denatured state structure underlying m value effects in staphylococcal nuclease

James O. Wrabl, D. Shortle, J. Wrabl, 1999, Nature Structural Biology.

Ensemble modulation as an origin of denaturant-independent hydrogen exchange in proteins.

V. Hilser, J. Wrabl, J. Wooll, 2000, Journal of molecular biology.

The ensemble nature of allostery

James O. Wrabl, V. Hilser, J. Wrabl, 2014, Nature.