J. Pipas

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Method for predicting RNA secondary structure.

J. Pipas, J. Mcmahon, J. E. McMahon, 1975, Proceedings of the National Academy of Sciences of the United States of America.

Simian Virus 40 Large T Antigen J Domain and Rb-Binding Motif Are Sufficient To Block Apoptosis Induced by Growth Factor Withdrawal in a Neural Stem Cell Line

J. Pipas, Alison Slinskey, D. Barnes, 1999, Journal of Virology.

Simian virus 40 T antigen can regulate p53-mediated transcription independent of binding p53

J. Pipas, P. Robbins, J. Rushton, 1997, Journal of virology.

Detecting viral sequences in NGS data.

J. Pipas, P. Cantalupo, 2019, Current opinion in virology.

Viral sequences in human cancer.

J. Pipas, P. Cantalupo, J. P. Katz, 2018, Virology.

Identification of a novel polyomavirus in a pancreatic transplant recipient with retinal blindness and vasculitic myopathy.

P. An, J. Pipas, W. Lipkin, 2014, The Journal of infectious diseases.

Simian Virus 40 Large T Antigen Induces IFN-Stimulated Genes through ATR Kinase

J. Pipas, C. Bakkenist, O. Gjoerup, 2014, The Journal of Immunology.

Merkel Cell Polyomavirus Exhibits Dominant Control of the Tumor Genome and Transcriptome in Virus-Associated Merkel Cell Carcinoma

R. Harris, Jingwei Cheng, J. Decaprio, 2017, mBio.

Coding-Complete Genome Sequence of a Pollen-Associated Virus Belonging to the Secoviridae Family Recovered from a Japanese Apricot (Prunus mume) Metagenome Data Set

J. Pipas, T. Ashman, P. Cantalupo, 2019, Microbiology Resource Announcements.

Redeployment of Myc and E2f1-3 drives Rb deficient cell cycles

R. Machiraju, J. Pipas, Kun Huang, 2015, Nature Cell Biology.

Antibody Neutralization Virus Capsid Mediates Escape from Flexibility in Surface-Exposed Loops in a

Jody, Seneca L. Bessling, J. Pipas, 2014 .

The Hsp 40 Molecular Chaperone , Ydj 1 p , Along With the Protein Kinase C Pathway , Impact Cell Wall Integrity in the Yeast Saccharomyces cerevisiae

Simon C Watkins, J. Pipas, J. Brodsky, 2006 .

Inhibition of Rb and p53 is insufficient for SV40 T-antigen transformation.

J. Pipas, K. Sachsenmeier, 2001, Virology.

Ataxia Telangiectasia-Mutated Damage-Signaling Kinase- and Proteasome-Dependent Destruction of Mre11-Rad50-Nbs1 Subunits in Simian Virus 40-Infected Primate Cells

J. Pipas, E. Fanning, Jeannine Gerhardt, 2008, Journal of Virology.

The virus-chaperone connection.

J. Pipas, C. S. Sullivan, 2001, Virology.

Isolation of mutants of an animal virus in bacteria.

J. Pipas, D. Nathans, K. Peden, 1980, Science.

HeLa Nucleic Acid Contamination in The Cancer Genome Atlas Leads to the Misidentification of Human Papillomavirus 18

J. Pipas, P. Cantalupo, J. P. Katz, 2015, Journal of Virology.

HeLa nucleic acid contamination in The Cancer Genome Atlas leads to the 1 misidentification of HPV 18 2 3

J. Pipas, P. Cantalupo, J. P. Katz, 2015 .

Binding to retinoblastoma pocket domain does not alter the inter-domain flexibility of the J domain of SV40 large T antigen.

J. Pipas, W. Chazin, M. Hammel, 2012, Archives of biochemistry and biophysics.

Adomaviruses: an emerging virus family provides insights into DNA virus evolution

E. Koonin, P. An, T. Ng, 2018, bioRxiv.

Repression of intestinal drug metabolizing enzymes by the SV40 large T antigen

J. Pipas, P. Cantalupo, W. Xie, 2007, Oncogene.

Analysis of viruses present in urine from patients with interstitial cystitis

J. Pipas, A. van Bokhoven, M. Imperiale, 2020, Virus Genes.

Chaperone-mediated in vitro assembly of Polyomavirus capsids

J. Pipas, R. Garcea, Laura R Chromy, 2003, Proceedings of the National Academy of Sciences of the United States of America.

ATP-Dependent Simian Virus 40 T-Antigen–Hsc70 Complex Formation

J. Pipas, S. Gilbert, C. S. Sullivan, 2001, Journal of Virology.

The Molecular Chaperone Activity of Simian Virus 40 Large T Antigen Is Required To Disrupt Rb-E2F Family Complexes by an ATP-Dependent Mechanism

J. Pipas, P. Cantalupo, C. S. Sullivan, 2000, Molecular and Cellular Biology.

Selection of transfored cells in serum-free media

J. Pipas, D. Barnes, L. Chiang, 1985, In Vitro Cellular & Developmental Biology.

Inhibition of Simian Virus 40 replication by targeting the molecular chaperone function and ATPase activity of T antigen.

P. Wipf, J. Pipas, J. Brodsky, 2009, Virus research.

Species-Specific Elements in the Large T-Antigen J Domain Are Required for Cellular Transformation and DNA Replication by Simian Virus 40

J. Pipas, John A. Lewis, J. Brodsky, 2000, Molecular and Cellular Biology.

Mutagenesis of a functional chimeric gene in yeast identifies mutations in the simian virus 40 large T antigen J domain

J. Pipas, J. Brodsky, S. W. Fewell, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Simian Virus 40 T Antigens and J Domains: Analysis of Hsp40 Cochaperone Functions in Escherichia coli

J. Pipas, C. Georgopoulos, K. Rundell, 2003, Journal of Virology.

A randomized trial of aspirin to prevent colorectal adenomas in patients with previous colorectal cancer.

Susan Halabi, Electra Paskett, R. Schilsky, 2003, The New England journal of medicine.

Expression of the gastrin gene in the normal human colon and colorectal adenocarcinoma.

R. Koski, J. Pipas, M. Melhem, 1993, Cancer research.

Identification of Head and Neck Cancer Subtypes Based on Human Papillomavirus Presence and E2F-Regulated Gene Expression

J. Pipas, P. Cantalupo, Molly E. Johnson, 2018, mSphere.

The Retinoblastoma Tumor Suppressor Regulates a Xenobiotic Detoxification Pathway

J. Pipas, M. S. Sáenz Robles, G. Leone, 2011, PloS one.

Expression of SV40 large T antigen in baculovirus systems and purification by immunoaffinity chromatography.

J. Pipas, P. Cantalupo, M. T. Sáenz-Robles, 1999, Methods in enzymology.

Requirements for immortalization of primary mouse embryo fibroblasts probed with mutants bearing deletions in the 3' end of SV40 gene A.

J. Pipas, C. Cole, M. J. Tevethia, 1988, Virology.

Intestinal Dysplasia Induced by Simian Virus 40 T Antigen Is Independent of p53

C. Coopersmith, J. Pipas, P. Carroll, 2005, Journal of Virology.

Mutational analysis of simian virus 40 T antigen: stimulation of cellular DNA synthesis and activation of rRNA genes by mutants with deletions in the T-antigen gene

N. Galanti, J. Pipas, R. Baserga, 1983, Molecular and cellular biology.

Identification of “Missing Link” Families of Small DNA Tumor Viruses

Anna K Belford, Michael J. Tisza, P. An, 2019, bioRxiv.

DNA TUMOR VIRUSES AND THEIR 3 4 CONTRIBUTIONS TO MOLECULAR BIOLOGY

J. Pipas, 2019 .

Use of transgenic mice reveals cell-specific transformation by a simian virus 40 T-antigen amino-terminal mutant

J. Pipas, T. Dyke, H. Symonds, 1993, Molecular and cellular biology.

Isolation and Analysis of Rare Norovirus Recombinants from Coinfected Mice Using Drop-Based Microﬂuidics

Andrew B. Feldman, Connie B. Chang, Adrian W. R. Serohijos, 2015 .

Ataxia Telangiectasia-Mutated Damage-Signaling Kinase- and Proteasome-Dependent Destruction of Mre11-Rad50-Nbs1 Subunits in Simian Virus 40-Infected Primate Cells (cid:1)

J. Pipas, E. Fanning, Jeannine Gerhardt, 2008 .

Site-directed mutagenesis of the simian virus 40 large T-antigen gene: replication-defective amino acid substitution mutants that retain the ability to induce morphological transformation

J. Pipas, K. Peden, 1985, Journal of virology.

Multiorgan Streptococcus milleri Abscesses During FOLFIRINOX Chemotherapy in a Patient With Metastatic Pancreatic Cancer.

J. Pipas, K. Ruoff, Evelyn M Brosnan, 2014, Gastrointestinal cancer research : GCR.

Phase I study of H3B-6527 in hepatocellular carcinoma (HCC) or intrahepatic cholangiocarcinoma (ICC).

J. Pipas, M. Sawyer, R. Finn, 2021 .

The amino-terminal functions of the simian virus 40 large T antigen are required to overcome wild-type p53-mediated growth arrest of cells

J. Pipas, C. Cole, R. S. Quartin, 1994, Journal of virology.

TheAmino-Terminal Functions oftheSimian Virus 40LargeT Antigen AreRequired ToOvercome Wild-Type p53-Mediated GrowthArrest ofCells

J. Pipas, C. Cole, R. S. Quartin, 1994 .

Synthesis and structure–activity relationships of small molecule inhibitors of the simian virus 40 T antigen oncoprotein, an anti-polyomaviral target.

P. Wipf, J. Pipas, J. Brodsky, 2014, Bioorganic & medicinal chemistry.

Two Independent Regions of Simian Virus 40 T Antigen Increase CBP/p300 Levels, Alter Patterns of Cellular Histone Acetylation, and Immortalize Primary Cells

J. Pipas, M. S. Sáenz Robles, C. Shivalila, 2013, Journal of Virology.

Large T antigens of polyomaviruses: amazing molecular machines.

P. An, J. Pipas, M. S. Sáenz Robles, 2012, Annual review of microbiology.

Simian Virus 40 T-Antigen-Mediated Gene Regulation in Enterocytes Is Controlled Primarily by the Rb-E2F Pathway

J. Pipas, M. S. Sáenz Robles, R. Whitehead, 2009, Journal of Virology.

Simian Virus 40 T-Antigen-Mediated Gene Regulation in Enterocytes Is Controlled Primarily by the Rb-E2F Pathway (cid:1)

J. Pipas, R. Whitehead, P. Cantalupo, 2009 .

Simian virus 40 mutants with amino-acid substitutions near the amino terminus of large T antigen

J. Pipas, K. Peden, 1992, Virus Genes.

Simian virus 40 large-T antigen expresses a biological activity complementary to the p300-associated transforming function of the adenovirus E1A gene products

P. Yaciuk, E. Moran, J. Pipas, 1991, Molecular and cellular biology.

The large tumor antigen of simian virus 40 encodes at least two distinct transforming functions

J. Pipas, A. Srinivasan, K. Peden, 1989, Journal of virology.

Mutants with changes within or near a hydrophobic region of simian virus 40 large tumor antigen are defective for binding cellular protein p53.

J. Pipas, A. Srinivasan, K. Peden, 1989, Virology.

Activated Ha-ras can cooperate with defective simian virus 40 in the transformation of nonestablished rat embryo fibroblasts

J. Pipas, M. Oren, D. Michalovitz, 1987, Journal of virology.

Mutational analysis of simian virus 40 T antigen: isolation and characterization of mutants with deletions in the T-antigen gene

J. Pipas, D. Nathans, K. Peden, 1983, Molecular and cellular biology.

Biochemical activities of T-antigen proteins encoded by simian virus 40 A gene deletion mutants

R. Tjian, J. Pipas, D. Nathans, 1983, Molecular and cellular biology.

T antigen transgenic mouse models.

J. Pipas, M. S. Sáenz Robles, 2009, Seminars in cancer biology.

A DNA replication-positive mutant of simian virus 40 that is defective for transformation and the production of infectious virions

J. Pipas, L. Tack, C. Cartwright, 1990, Journal of virology.

Detection of Novel Sequences Related to African Swine Fever Virus in Human Serum and Sewage

J. Pipas, H. Virgin, R. Girones, 2009, Journal of Virology.

A Structure-Guided Mutational Analysis of Simian Virus 40 Large T Antigen: Identification of Surface Residues Required for Viral Replication and Transformation

J. Pipas, Xiaojiang S. Chen, Deepika Ahuja, 2009, Journal of Virology.

IFN-Stimulated Genes through ATR Kinase Simian Virus 40 Large T Antigen Induces

J. Pipas, C. Bakkenist, O. Gjoerup, 2014 .

Simian Agent12Isa BK Virus-Like Papovavirus WhichReplicates inMonkeyCells

J. Pipas, 1985 .

Site-Directed Mutagenesis oftheSimian Virus40LargeT-Antigen Gene:Replication-Defective AminoAcidSubstitution Mutants That Retain theAbility toInduce Morphological Transformation

J. Pipas, 1985 .

Somatic cells efficiently join unrelated DNA segments end-to-end

J. Pipas, P. Berget, J. H. Wilson, 1982, Molecular and cellular biology.

Molecular chaperone function of the SV40 large T antigen.

J. Pipas, 1998, Developments in biological standardization.

Removal of a small C-terminal region of JCV and SV40 large T antigens has differential effects on transformation.

J. Pipas, M. S. Sáenz Robles, N. Seneca, 2014, Virology.

Deletion mutants of SV40 that affect the structure of viral tumor antigens.

J. Pipas, D. Nathans, K. Peden, 1980, Cold Spring Harbor symposia on quantitative biology.

T Antigens Encoded by Replication-defective Simian Virus 40 Mutants dl1135 and 5080(*)

J. Pipas, Brenda S. Collins, Brenda S Collins, 1995, The Journal of Biological Chemistry.

Simian virus 40 infection disrupts p130-E2F and p107-E2F complexes but does not perturb pRb-E2F complexes.

J. Pipas, A. Baker, C. S. Sullivan, 2004, Virology.

Human lens epithelial cell line.

H. Okamoto, J. Pipas, H. Okamoto, 1998, Experimental eye research.

Enterocyte Proliferation and Intestinal Hyperplasia Induced by Simian Virus 40 T Antigen Require a Functional J Domain

J. Pipas, M. S. Sáenz Robles, Abhilasha V. Rathi, 2007, Journal of Virology.

8 – Cytotoxic T Cell Recognition of the SV40 Tumor Antigen: A Note of Caution

J. Pipas, L. Gooding, O. apos, 1988 .

Expression of wild-type and mutant simian virus 40 large tumor antigens in villus-associated enterocytes of transgenic mice.

C. Coopersmith, J. Gordon, J. Pipas, 1994, Proceedings of the National Academy of Sciences of the United States of America.

SV40 as an oncogenic virus and possible human pathogen.

J. Decaprio, J. Pipas, A. Giordano, 1998, Developments in biological standardization.

Expression of the small T antigen of Lymphotropic Papovavirus is sufficient to transform primary mouse embryo fibroblasts.

J. Pipas, C. Buck, Rachel M. Schowalter, 2016, Virology.

Properties of a simian virus 40 mutant T antigen substituted in the hydrophobic region: defective ATPase and oligomerization activities and altered phosphorylation accompany an inability to complex with cellular p53

J. Pipas, L. Tack, J. Wright, 1989, Journal of virology.

Mutations near the carboxyl terminus of the simian virus 40 large tumor antigen alter viral host range

J. Pipas, 1985, Journal of virology.

Use of transgenic mice reveals cell-specific transformation by a simian virus 40 T-antigen amino-terminal mutant.

J. Pipas, H. Symonds, J. Chen, 1993, Molecular and cellular biology.

The Hsp40 Molecular Chaperone Ydj1p, Along With the Protein Kinase C Pathway, Affects Cell-Wall Integrity in the Yeast Saccharomyces cerevisiae

Simon C Watkins, J. Pipas, J. Brodsky, 2007, Genetics.

Pathway, Impact Cell Wall Integrity in the Yeast Saccharomyces cerevisiae

J. Pipas, J. Brodsky, Christine M. Wright, 2007 .

Pyrimidinone-peptoid hybrid molecules with distinct effects on molecular chaperone function and cell proliferation.

P. Wipf, J. Pipas, D. Huryn, 2008, Bioorganic & medicinal chemistry.

The Ancient Evolutionary History of Polyomaviruses

Eric Delwart, James M. Pipas, Alison A. McBride, 2016, PLoS pathogens.

Artifact‐Free Quantification and Sequencing of Rare Recombinant Viruses by Using Drop‐Based Microfluidics

Connie B. Chang, A. Rotem, J. Pipas, 2015, Chembiochem : a European journal of chemical biology.

Common and unique features of T antigens encoded by the polyomavirus group

J. Pipas, 1992, Journal of virology.

T Antigens of Simian Virus 40: Molecular Chaperones for Viral Replication and Tumorigenesis

J. Pipas, C. S. Sullivan, 2002, Microbiology and Molecular Biology Reviews.

SV40 large T antigen targets multiple cellular pathways to elicit cellular transformation

J. Pipas, M. T. Sáenz-Robles, Deepika Ahuja, 2005, Oncogene.

Simian agent 12 is a BK virus-like papovavirus which replicates in monkey cells

J. Pipas, T. P. Cunningham, 1985, Journal of virology.

Klassevirus 1, a previously undescribed member of the family Picornaviridae, is globally widespread

Guoyan Zhao, David Wang, J. Pipas, 2009, Virology Journal.

Transforming functions of Simian Virus 40

J. Pipas, M. T. Sáenz-Robles, C. S. Sullivan, 2001, Oncogene.

Propagation of wild-type and mutant SV40.

J. Pipas, K. Sachsenmeier, J. D. Tremblay, 2001, Methods in molecular biology.

SV40: Cell transformation and tumorigenesis.

J. Pipas, 2009, Virology.

pp60c-src activation in human colon carcinoma.

J. Pipas, C. Cartwright, M. Kamps, 1989, The Journal of clinical investigation.

The amino-terminal transforming region of simian virus 40 large T and small t antigens functions as a J domain

I. M. Marks, Y. Li, J. Pipas, 1997, Molecular and cellular biology.

Expression and function of microRNAs in viruses great and small.

R. Treisman, J. Pipas, D. Ganem, 2006, Cold Spring Harbor Symposia on Quantitative Biology.

SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells

James M. Pipas, J. Pipas, D. Ganem, 2005, Nature.

SV 40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells

J. Pipas, D. Ganem, A. Grundhoff, 2005 .

E2f8 mediates tumor suppression in postnatal liver development.

R. Machiraju, J. Pipas, Kun Huang, 2016, The Journal of clinical investigation.

Expression of the myc gene family in different stages of human colorectal cancer.

J. Pipas, J. Geiser, G. Finley, 1989, Oncogene.

Evolution on the Biophysical Fitness Landscape of an RNA Virus

Eugene I Shakhnovich, Connie B. Chang, Adrian W. R. Serohijos, 2018, Molecular biology and evolution.

E2F1-3 Switch from Activators in Progenitor Cells to Repressors in Differentiating Cells

J. Pipas, O. Sansom, D. Winton, 2009, Nature.

Complete Nucleotide Sequence of Polyomavirus SA12

J. Pipas, P. Cantalupo, K. Peden, 2005, Journal of Virology.

DNA Tumor Viruses and Their Contributions to Molecular Biology

J. Pipas, 2019, Journal of Virology.

Constructed Mutants of Simian Virus 40

D. Shortle, J. Pipas, D. DiMaio, 1979 .

A Retinoblastoma Allele That Is Mutated at Its Common E2F Interaction Site Inhibits Cell Proliferation in Gene-Targeted Mice

J. Pipas, F. Dick, G. Leone, 2014, Molecular and Cellular Biology.

Infection of CV1 cells expressing the polyoma virus middle T antigen or the SV40 agnogene product with simian virus 40 host-range mutants

J. Pipas, L. Tack, S. Carswell, 1990, In Vitro Cellular & Developmental Biology.

The retinoblastoma susceptibility gene product undergoes cell cycle-dependent dephosphorylation and binding to and release from SV40 large T

D. Livingston, J. Decaprio, J. Pipas, 1990, Cell.

Large T antigens of many polyomaviruses are able to form complexes with the retinoblastoma protein

S. Friend, E. Major, J. Pipas, 1990, Journal of virology.

Role of T antigen interactions with p53 in tumorigenesis.

A. Levine, J. Pipas, 2001, Seminars in cancer biology.

Loss of E2F4 activity leads to abnormal development of multiple cellular lineages.

Seiichi Ishida, J. Nevins, J. Pipas, 2000, Molecular cell.

Adenovirus E4orf6 oncoprotein modulates the function of the p53-related protein, p73.

J. Pipas, T. Shenk, F. Higashino, 1998, Proceedings of the National Academy of Sciences of the United States of America.

SV40 large T antigen functions at two distinct steps in virion assembly.

J. Pipas, S. L. Spence, 1994, Virology.

Intestinal Hyperplasia Induced by Simian Virus 40 Large Tumor Antigen Requires E2F2

J. Pipas, R. Opavsky, G. Leone, 2007, Journal of Virology.

pp 60 csrc activation in human colon carcinoma

J. Pipas, Christine, Mark, 2018 .

Viral Oncogene Expression in the Stem/Progenitor Cell Compartment of the Mouse Intestine Induces Adenomatous Polyps

J. Pipas, M. S. Sáenz Robles, G. Leone, 2014, Molecular Cancer Research.

trans-Dominant and non-trans-dominant mutant simian virus 40 large T antigens show distinct responses to ATP

I. M. Marks, J. Pipas, P. Cantalupo, 1997, Journal of virology.

Identification of Adomavirus Virion Proteins

Anna K Belford, Michael J. Tisza, P. An, 2018 .

A screen for modulators of large T antigen's ATPase activity uncovers novel inhibitors of Simian Virus 40 and BK virus replication.

P. Wipf, J. Pipas, J. Brodsky, 2012, Antiviral research.

Ribosomal protein genes are overexpressed in colorectal cancer: isolation of a cDNA clone encoding the human S3 ribosomal protein

I. Wool, J. Pipas, K. Pogue-Geile, 1991, Molecular and cellular biology.

Whole-Genome Sequencing of a Single Viral Species from a Highly Heterogeneous Sample.

D. Weitz, A. Rotem, J. Pipas, 2015, Angewandte Chemie.

Stability and detection of nucleic acid from viruses and hosts in controlled mosquito blood feeds

D. Norris, J. Pipas, M. S. Sáenz Robles, 2020, PloS one.

Raw Sewage Harbors Diverse Viral Populations

Adam D. Wier, J. Pipas, R. Girones, 2011, mBio.

Isolation and Analysis of Rare Norovirus Recombinants from Coinfected Mice Using Drop-Based Microfluidics

Andrew B. Feldman, James M. Pipas, Thomas S. Mehoke, 2015, Journal of Virology.

Rapid, targeted and culture-free viral infectivity assay in drop-based microfluidics.

Connie B. Chang, D. Weitz, A. Rotem, 2015, Lab on a chip.

Specific repression of TATA-mediated but not initiator-mediated transcription by wild-type p53

J. Pipas, D. Mack, L. Laimins, 1993, Nature.

T-antigen mutant activities in vivo: roles of p53 and pRB binding in tumorigenesis of the choroid plexus.

J. Pipas, T. Dyke, J. Chen, 1992, Oncogene.

Single-Cell Transcriptomics Reveals a Heterogeneous Cellular Response to BK Virus Infection

P. An, J. Pipas, P. Cantalupo, 2020, Journal of Virology.

Induction of interferon-stimulated genes by Simian virus 40 T antigens.

J. Pipas, P. Cantalupo, Saumendra N. Sarkar, 2010, Virology.

Effects of Mutations within the SV40 Large T Antigen ATPase/p53 Binding Domain on Viral Replication and Transformation

J. Pipas, A. Srinivasan, K. Peden, 2004, Virus Genes.

Cell proliferation in the absence of E2F1-3.

Nidhi Sharma, Jean-Leon Chong, J. Pipas, 2011, Developmental biology.

DnaJ/hsp40 chaperone domain of SV40 large T antigen promotes efficient viral DNA replication.

P. Silver, J. Decaprio, J. Pipas, 1997, Genes & development.

Human polyomavirus BKV infection of endothelial cells results in interferon pathway induction and persistence

P. An, J. Pipas, M. S. Sáenz Robles, 2019, PLoS pathogens.

Polyomavirus T antigens activate an antiviral state.

J. Pipas, Nicholas S. Giacobbi, Tushar Gupta, 2015, Virology.

The pollen virome of wild plants and its association with variation in floral traits and land use

J. Pipas, T. Ashman, P. Cantalupo, 2022, Nature communications.

Simian virus 40 large T antigen host range domain functions in virion assembly

J. Pipas, S. L. Spence, 1994, Journal of virology.

Distribution of cells expressing myc proteins in human colorectal epithelium, polyps, and malignant tumors.

R. Koski, J. Pipas, M. Melhem, 1992, Cancer research.

The pollen virome of wild plants and its association with variation in floral traits and land use

J. Pipas, T. Ashman, P. Cantalupo, 2022, Nature Communications.

Cell-type specific regulation of gene expression by simian virus 40 T antigens.

J. Pipas, R. Whitehead, P. Cantalupo, 2009, Virology.

Selection of transformed cells in serum-free media.

J. Pipas, D. Barnes, L. Chiang, 1985, In vitro cellular & developmental biology : journal of the Tissue Culture Association.

Polyomavirus T Antigens: Molecular Chaperones for Multiprotein Complexes

J. Pipas, J. Brodsky, 1998, Journal of Virology.

Chaperones for Multiprotein Complexes Polyomavirus T Antigens : Molecular

J. Pipas, J. Brodsky, 1998 .

Host transcription in bacteriophage P22-infected Salmonella typhimurium

J. Pipas, R. Reeves, 1979, Journal of virology.

Recurrent integration of human papillomavirus genomes at transcriptional regulatory hubs

J. Pipas, J. P. Katz, Alix Warburton, 2021, npj Genomic Medicine.

Recurrent integration of human papillomavirus genomes at transcriptional regulatory hubs

J. Pipas, J. P. Katz, Alix Warburton, 2021, bioRxiv.

Phase 1b study of H3B-6545 in combination with palbociclib in women with metastatic estrogen receptor–positive (ER+), human epidermal growth factor receptor 2 (HER2)-negative breast cancer.

M. Korpal, D. Juric, J. Pipas, 2021 .

The conserved core enzymatic activities and the distinct dynamics of polyomavirus large T antigens.

P. An, J. Pipas, J. Brodsky, 2015, Archives of biochemistry and biophysics.

Dosage-dependent copy number gains in E2f1 and E2f3 drive hepatocellular carcinoma

J. Pipas, T. Rosol, A. de Bruin, 2017, The Journal of clinical investigation.

Exploration of Panviral Proteome: High-Throughput Cloning and Functional Implications in Virus-host Interactions

J. Pipas, J. LaBaer, Lusheng Song, 2014, Theranostics.

Flexibility in Surface-Exposed Loops in a Virus Capsid Mediates Escape from Antibody Neutralization

Seneca L. Bessling, J. Pipas, T. Smith, 2014, Journal of Virology.

Characterization of immortalized rabbit corneal epithelial cells with SV40 large T antigen.

J. Pipas, J. Hassell, N. Sundarraj, 1995, Japanese journal of ophthalmology.

SV40 large tumor antigen (T antigen): database of mutants

Clifford G. Robinson, James M. Pipas, J. Pipas, 1998, Nucleic Acids Res..

Cellular Transformation of Mouse Embryo Fibroblasts in the Absence of Activator E2Fs

J. Pipas, M. S. Sáenz Robles, Tushar Gupta, 2015, Journal of Virology.

Cellular Transformation of Mouse Embryo 4 Fibroblasts in the Absence of Activator E 2 Fs 5 6 Running title : Transformation by SV 40 T antigen in the 7 absence of E 2 F 1-2-3

J. Pipas, M. S. Robles, Tushar Gupta, 2015 .

Carboxyl-terminal mutants of the large tumor antigen of simian virus 40: a role for the early protein late in the lytic cycle.

J. Pipas, J. Brady, K. Khalili, 1988, Proceedings of the National Academy of Sciences of the United States of America.

Transcriptome regulation and chromatin occupancy by E2F3 and MYC in mice

J. Pipas, Kun Huang, Qianben Wang, 2016, Scientific Data.

Evolution on the Biophysical Fitness Landscape of an RNA Virus

Connie B. Chang, Adrian W. R. Serohijos, A. Rotem, 2018 .

Complete Genome Sequence of a Polyomavirus Recovered from a Pomona Leaf-Nosed Bat (Hipposideros pomona) Metagenome Data Set

J. Pipas, P. Cantalupo, C. Buck, 2017, Genome Announcements.

Cultured Renal Proximal Tubular Epithelial Cells Resemble a Stressed/Damaged Kidney While Supporting BK Virus Infection

P. An, J. Pipas, M. Imperiale, 2023, Journal of virology.

Analysis of viruses present in urine from patients with interstitial cystitis

J. Pipas, A. van Bokhoven, M. Imperiale, 2020, Virus Genes.

Dosage-dependent copy number gains in E2f1 and E2f3 drive hepatocellular carcinoma

J. Pipas, T. Rosol, A. de Bruin, 2017, The Journal of clinical investigation.

DNA tumor viruses

J. Pipas, B. Damania, 2009 .

Gene structure and expression in colorectal cancer.

J. Pipas, K. Pogue-Geile, C. Cartwright, 1993, Advances in experimental medicine and biology.

Isolation of a simian virus 40-simian agent 12 recombinant papovavirus that synthesizes a hybrid large tumour antigen.

J. Pipas, L. Hunter, 1988, The Journal of general virology.

Simian Virus40LargeT Antigen HostRangeDomain Functions inVirion Assembly

J. Pipas, 1994 .

SummonChimera infers integrated viral genomes with nucleotide precision from NGS data

James M. Pipas, Joshua P. Katz, J. Pipas, 2014, BMC Bioinformatics.

Two Independent Regions of Simian Virus 40 T Antigen Increase CBP/p300 Levels, Alter Patterns of Cellular Histone Acetylation, and Immortalize Primary Cells

J. Pipas, M. S. Sáenz Robles, C. Shivalila, 2013, Journal of Virology.

Complete Genome Sequence of Pittsburgh Sewage-Associated Virus 1

J. Pipas, P. Cantalupo, 2018, Genome Announcements.