J. Kijas

发表

The sheep genome illuminates biology of the rumen and lipid metabolism

Bronwen L. Aken, S. Searle, P. Flicek, 2014, Science.

An evaluation of sequencing coverage and genotyping strategies to assess neutral and adaptive diversity

Paul Flicek, Stefan Engelen, Adriana Alberti, 2019, Molecular ecology resources.

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

Hans H. Cheng, S. Foissac, C. Elsik, 2015, Genome Biology.

A Genome Wide Survey of SNP Variation Reveals the Genetic Structure of Sheep Breeds

B. Dalrymple, S. McWilliam, M. P. Heaton, 2009, PloS one.

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)

Deacon J. Sweeney, Jun Wang, Shuang Yang, 2012, Nature Biotechnology.

Convergent genomic signatures of domestication in sheep and goats

P. Taberlet, F. Pompanon, P. Flicek, 2018, Nature Communications.

Approaches taken, progress made, and enhanced utility of long read-based goat, swine, cattle and sheep reference genomes

Timothy P. L. Smith, S. Koren, A. Phillippy, 2016 .

Genetic architecture of gene expression in ovine skeletal muscle

T. Vuocolo, C. Gondro, H. Kadarmideen, 2011, BMC Genomics.

Using Regulatory and Epistatic Networks to Extend the Findings of a Genome Scan: Identifying the Gene Drivers of Pigmentation in Merino Sheep

S. McWilliam, A. Reverter, J. Kijas, 2011, PloS one.

The Effect of Genetic Variation of the Retinoic Acid Receptor-Related Orphan Receptor C Gene on Fatness in Cattle

J. Kijas, W. Barendse, R. Bunch, 2007, Genetics.

SNP discovery in nonmodel organisms: strand bias and base‐substitution errors reduce conversion rates

W. Barris, Sean McWilliam, J. Kijas, 2015, Molecular ecology resources.

Fine-scale population structure analysis of seven local Swiss sheep breeds using genome-wide SNP data

J. Kijas, C. Drögemüller, J. Tetens, 2014 .

Diversity and linkage disequilibrium in farmed Tasmanian Atlantic salmon.

J. Kijas, K. Verbyla, N. Elliot, 2017, Animal genetics.

Integrated transcriptome, DNA methylome and chromatin state accessibility landscapes reveal regulators of Atlantic salmon maturation

A. Reverter, M. Menzies, J. Kijas, 2020 .

Whole-genome resequencing of wild and domestic sheep identifies genes associated with morphological and agronomic traits

J. Lenstra, J. Kijas, D. Coltman, 2020, Nature Communications.

Evidence for multiple alleles effecting muscling and fatness at the Ovine GDF8 locus

J. E. Edwards, V. H. Oddy, J. Kijas, 2007, BMC Genetics.

Leveraging transcriptome and epigenome landscapes to infer regulatory networks during the onset of sexual maturation

B. Evans, A. Reverter, M. Menzies, 2022, BMC Genomics.

Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data

B. Dalrymple, A. Reverter, J. Kijas, 2017, bioRxiv.

Molecular Cytogenetics and Gene Mapping in Sheep (Ovis aries, 2n = 54)

B. Dalrymple, J. Maddox, F. Nicholas, 2009, Cytogenetic and Genome Research.

Copy number variants in the sheep genome detected using multiple approaches

G. M. Jenkins, M. Goddard, R. Brauning, 2016, bioRxiv.

Cloning and characterization of the canine photoreceptor specific cone-rod homeobox (CRX) gene and evaluation as a candidate for early onset photoreceptor diseases in the dog.

E. Ostrander, C. Mellersh, G. Acland, 2002, Molecular vision.

Selection signatures in tropical cattle are enriched for promoter and coding regions and reveal missense mutations in the damage response gene HELB

A. Reverter, J. Kijas, B. Hayes, 2020, Genetics Selection Evolution.

Genome-wide search for signatures of selection in three major Brazilian locally adapted sheep breeds

J. Kijas, M. Yamagishi, A. R. Caetano, 2017 .

Whole‐genome resequencing uncovers molecular signatures of natural and sexual selection in wild bighorn sheep

G. Luikart, F. Allendorf, Sean McWilliam, 2015, Molecular ecology.

Globally dispersed Y chromosomal haplotypes in wild and domestic sheep.

J. Maddox, J. Kijas, D. Coltman, 2006, Animal genetics.

The ‘heritability’ of domestication and its functional partitioning in the pig

A. Reverter, J. Kijas, M. Pérez-Enciso, 2016, Heredity.

Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 to Determine the Number and Topology of Horns in Bovidae

D. Duboule, G. Tosser-Klopp, J. Lenstra, 2020, bioRxiv.

Comparison of horse Chromosome 3 with donkey and human chromosomes by cross-species painting and heterologous FISH mapping

L. Andersson, J. Kijas, B. Chowdhary, 1999, Mammalian Genome.

Compression distance can discriminate animals by genetic profile, build relationship matrices and estimate breeding values

A. Reverter, J. Kijas, N. Hudson, 2015, Genetics Selection Evolution.

Compression distance can discriminate animals by genetic profile, build relationship matrices and estimate breeding values

A. Reverter, J. Kijas, N. Hudson, 2015, Genetics Selection Evolution.

AdaptMap: exploring goat diversity and adaptation

B. Guldbrandtsen, B. Rosen, C. V. Van Tassell, 2018, Genetics Selection Evolution.

Microphthalmia in Texel Sheep Is Associated with a Missense Mutation in the Paired-Like Homeodomain 3 (PITX3) Gene

J. Kijas, A. Brunner, C. Drögemüller, 2010, PloS one.

Genetic Testing for TMEM154 Mutations Associated with Lentivirus Susceptibility in Sheep

G. Harhay, T. Kalbfleisch, M. P. Heaton, 2013, PloS one.

Genetic testing for mutations associated with lentivirus susceptibility in sheep

G. Harhay, T. Kalbfleisch, M. P. Heaton, 2015 .

Digitalcommons@university of Nebraska -lincoln Genetic Testing for Tmem154 Mutations Associated with Lentivirus Susceptibility in Sheep Genetic Testing for Tmem154 Mutations Associated with Lentivirus Susceptibility in Sheep Introduction

G. Harhay, T. Kalbfleisch, M. P. Heaton, 2022 .

Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers

Zeny Z. Feng, F. Schenkel, J. Kijas, 2017, BMC Genomics.

Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture

Samuel A. M. Martin, J. Vik, A. Maass, 2016, BMC Genomics.

Naturally occurring rhodopsin mutation in the dog causes retinal dysfunction and degeneration mimicking human dominant retinitis pigmentosa

T. Aleman, A. Cideciyan, S. Jacobson, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Analysis of copy number variants in the cattle genome.

W. Barris, Sean McWilliam, J. Kijas, 2011, Gene.

Information compression exploits patterns of genome composition to discriminate populations and highlight regions of evolutionary interest

Antonio Reverter, Nicholas J. Hudson, Sean McWilliam, 2014, BMC Bioinformatics.

Nucleotide diversity on the ovine Y chromosome.

J. Kijas, J. Meadows, R. Hawken, 2004, Animal genetics.

Ovine congenital progressive muscular dystrophy (OCPMD) is a model of TNNT1 congenital myopathy

Joshua S. Clayton, J. Kijas, G. Ravenscroft, 2020, Acta Neuropathologica Communications.

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

Bertrand Servin, Simon Boitard, John McEwan, 2012, PLoS biology.

BULL GENOMES AND SHEEPGENOMEDB PROJECTS : ENABLING COST-EFFECTIVE SEQUENCE LEVEL ANALYSES GLOBALLY

R. Brauning, J. Kijas, B. Hayes, 2017 .

The extent of linkage disequilibrium in beef cattle breeds using high-density SNP genotypes

A. Reverter, J. Kijas, L. Porto-Neto, 2014, Genetics Selection Evolution.

Characterization of linkage disequilibrium, consistency of gametic phase and admixture in Australian and Canadian goats

F. Schenkel, J. Kijas, R. Ventura, 2015, BMC Genetics.

Linkage disequilibrium compared between five populations of domestic sheep

J. Kijas, E. Chan, J. Meadows, 2008, BMC Genetics.

Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture

Samuel A. M. Martin, J. Vik, A. Maass, 2017, BMC Genomics.

Functional Annotation of All Salmonid Genomes (FAASG)

Samuel A. M. Martin, J. Vik, A. Maass, 2017 .

Historical Introgression from Wild Relatives Enhanced Climatic Adaptation and Resistance to Pneumonia in Sheep

J. Lenstra, J. Kijas, D. Coltman, 2020, Molecular biology and evolution.

Genomic signatures of adaptive introgression from European mouflon into domestic sheep

J. Kijas, P. Orozco‐terWengel, M. Bruford, 2017, Scientific Reports.

Consistent divergence times and allele sharing measured from cross‐species application of SNP chips developed for three domestic species

M. P. Heaton, J. McEwan, J. Kijas, 2012, Molecular ecology resources.

Accuracy of genotype imputation in sheep breeds.

J. Kijas, B. Hayes, H. Daetwyler, 2012, Animal genetics.

Five Ovine Mitochondrial Lineages Identified From Sheep Breeds of the Near East

J. Kijas, J. Meadows, E. Gootwine, 2007, Genetics.

Cloning of the canine ABCA4 gene and evaluation in canine cone-rod dystrophies and progressive retinal atrophies.

E. Kirkness, G. Acland, G. Aguirre, 2004, Molecular vision.

Copy number variants in the sheep genome detected using multiple approaches

G. M. Jenkins, M. Goddard, R. Brauning, 2016, bioRxiv.

Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds

R. Gibbs, P. Taberlet, F. Pompanon, 2018, Nature Communications.

Re-sequencing regions of the ovine Y chromosome in domestic and wild sheep reveals novel paternal haplotypes.

J. Kijas, J. Meadows, 2009, Animal genetics.

Mitochondrial sequence reveals high levels of gene flow between breeds of domestic sheep from Asia and Europe.

J. Kijas, J. Meadows, V. Pardeshi, 2005, The Journal of heredity.

Mitochondrial haplotypes reveal a strong genetic structure for three Indian sheep breeds.

J. Kijas, V. Gupta, J. Meadows, 2007, Animal genetics.

Radiation hybrid map, physical map, and low-pass genomic sequence of the canine prcd region on CFA9 and comparative mapping with the syntenic region on human chromosome 17.

J. Malek, C. Fraser, G. Acland, 2003, Genomics.

Microdissection of pig chromosomes: dissection of whole chromosomes, arms and bands for construction of paints and libraries.

J. Kijas, X. Guan, B. Chowdhary, 2004, Hereditas.

Introgression and the fate of domesticated genes in a wild mammal population

P. Visscher, J. Slate, J. Kijas, 2013, Molecular ecology.

Compression Efficiency Relationship Matrix: Developing New Methods to Determine Genomic Relationships for Improved Breeding

Nicholas J. Hudson, James W. Kijas, Laercio R. Porto-Neto, 2014 .

Understanding parasitic infection in sheep to design more efficient animal selection strategies.

A. Ingham, J. Kijas, P. Hunt, 2013, Veterinary journal.

Haplogroup relationships between domestic and wild sheep resolved using a mitogenome panel

S. Hiendleder, J. Kijas, J. Meadows, 2011, Heredity.

Genome Sequencing of Blacklip and Greenlip Abalone for Development and Validation of a SNP Based Genotyping Tool

Sean McWilliam, J. Kijas, H. King, 2019, Front. Genet..

Linkage disequilibrium over short physical distances measured in sheep using a high-density SNP chip.

A. Reverter, R. Brauning, J. McEwan, 2014, Animal genetics.

Selection signature analysis reveals genes associated with tail type in Chinese indigenous sheep

J. Kijas, L. Du, H. Wang, 2017, Animal genetics.

Sequence diversity and rates of molecular evolution between sheep and cattle genes.

A. Ingham, M. Menzies, J. Kijas, 2006, Animal genetics.

Changed Patterns of Genomic Variation Following Recent Domestication: Selection Sweeps in Farmed Atlantic Salmon

Sean McWilliam, J. Kijas, R. Houston, 2020, Frontiers in Genetics.

Polygenic and sex specific architecture for two maturation traits in farmed Atlantic salmon

Sean McWilliam, J. Kijas, Amin R. Mohamed, 2019, BMC Genomics.

Multi-Tissue Transcriptome Profiling of North American Derived Atlantic Salmon

A. Reverter, J. Kijas, Amin R. Mohamed, 2018, Front. Genet..

Evolution of Sex Determination Loci in Atlantic Salmon

Sean McWilliam, J. Kijas, S. Lien, 2018, Scientific Reports.

Test cross explores if sdY is the sole genetic requirement for maleness in Atlantic Salmon

J. Kijas, 2018 .

Genome-wide analysis reveals adaptation to high altitudes in Tibetan sheep

J. Kijas, Jiaxue Cao, Li Zhang, 2016, Scientific Reports.

Adaptations to Climate-Mediated Selective Pressures in Sheep

J. Kijas, S. Joost, L. Colli, 2014, Molecular biology and evolution.

Application of Selection Mapping to Identify Genomic Regions Associated with Dairy Production in Sheep

J. Kijas, R. Pong-Wong, B. Gutiérrez-Gil, 2014, PloS one.

Detecting regions of homozygosity to map the cause of recessively inherited disease.

J. Kijas, 2013, Methods in molecular biology.

East Friesian sheep carry a Myostatin allele known to cause muscle hypertrophy in other breeds.

P D Nichols, J. Kijas, P. Nichols, 2010, Animal genetics.

Reference genome of wild goat (capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication

Qiye Li, Wen Wang, Yu Jiang, 2015, BMC Genomics.

Beta-globin gene evolution in the ruminants: evidence for an ancient origin of sheep haplotype B.

B. Dalrymple, J. Kijas, X. Wang, 2015, Animal genetics.

Genome-wide association reveals the locus responsible for four-horned ruminant.

J. Kijas, N. Cockett, Marina Naval Sanchez, 2016, Animal genetics.

Genetic diversity and investigation of polledness in divergent goat populations using 52 088 SNPs.

G. Tosser-Klopp, J. Kijas, R. Mcculloch, 2013, Animal genetics.

Genome‐wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population

J. Slate, J. McEwan, J. Kijas, 2011, Molecular ecology.

Population structure and history of the Welsh sheep breeds determined by whole genome genotyping

J. Kijas, D. Larkin, M. Farré, 2015, BMC Genetics.

A genome‐wide set of SNPs detects population substructure and long range linkage disequilibrium in wild sheep

J. Kijas, D. Coltman, J. Poissant, 2011, Molecular ecology resources.

Genomic data suggest environmental drivers of fish population structure in the deep sea: A case study for the orange roughy ( Hoplostethus atlanticus )

J. Kijas, P. England, W. Barendse, 2020 .

The sheep genome reference sequence: a work in progress.

C. Wade, T. Faraut, B. Dalrymple, 2010, Animal genetics.

Cloning, mapping, and retinal expression of the canine ciliary neurotrophic factor receptor α (CNTFRα)

G. Aguirre, Qi Zhang, J. Kijas, 2003 .

Cloning, mapping, and retinal expression of the canine ciliary neurotrophic factor receptor alpha (CNTFRalpha).

G. Aguirre, Qi Zhang, J. Kijas, 2003, Investigative ophthalmology & visual science.

Genomic analysis identified a potential novel molecular mechanism for high-altitude adaptation in sheep at the Himalayas

Qianjun Zhao, J. Kijas, K. Dong, 2016, Scientific Reports.

SNPs for Parentage Testing and Traceability in Globally Diverse Breeds of Sheep

T. Kalbfleisch, M. P. Heaton, J. Maddox, 2014, PloS one.

Merino and Merino-derived sheep breeds: a genome-wide intercontinental study

J. Lenstra, J. Kijas, J. V. Delgado Bermejo, 2015, Genetics Selection Evolution.

Technical note: High fidelity of whole-genome amplified sheep (Ovis aries) deoxyribonucleic acid using a high-density single nucleotide polymorphism array-based genotyping platform.

D. A. Magee, J. Kijas, D. MacHugh, 2010, Journal of animal science.

Whole-genome resequencing of wild and domestic sheep identifies genes associated with morphological and agronomic traits

J. Lenstra, J. Kijas, D. Coltman, 2020, Nature Communications.

Genetic origin of Arapawa sheep and adaptation to a feral lifestyle.

J. McEwan, J. Kijas, N. Villalobos, 2013 .

Genetic association of delta-six fatty acid desaturase single nucleotide polymorphic molecular marker and muscle long chain omega-3 fatty acids in Australian lamb

J. Kijas, P. Nichols, R. Mcculloch, 2011 .

Linkage disequilibrium mapping in domestic dog breeds narrows the progressive rod-cone degeneration interval and identifies ancestral disease-transmitting chromosome.

G. Acland, G. Aguirre, S. Pearce-Kelling, 2006, Genomics.

Assessment of genetic diversity and population structure in cultured Australian Pacific oysters.

Sean McWilliam, J. Kijas, A. Gutierrez, 2019, Animal genetics.

Genomewide association for a dominant pigmentation gene in sheep.

J. Kijas, J. Calvo, R. Mcculloch, 2013, Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie.

Diversity of copy number variation in a worldwide population of sheep.

Li Li, Hongping Zhang, J. Kijas, 2017, Genomics.

ddRAD-seq reveals the genetic structure and detects signals of selection in Italian brown trout

M. Morgante, J. Kijas, F. Marroni, 2022, Genetics, selection, evolution : GSE.

Characterization of Ovine Nectin-4, a Novel Peste des Petits Ruminants Virus Receptor

T. Kalbfleisch, M. P. Heaton, J. Kijas, 2013, Journal of Virology.

Canine models of ocular disease: outcross breedings define a dominant disorder present in the English mastiff and bull mastiff dog breeds.

G. Acland, G. Aguirre, J. Kijas, 2003, Journal of Heredity.

Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae

D. Duboule, G. Tosser-Klopp, J. Lenstra, 2021, Molecular biology and evolution.

Estimating the genetic merit of sires by using pooled DNA from progeny of undetermined pedigree

J. Kijas, S. Lehnert, J. Henshall, 2017, Genetics Selection Evolution.

Haplotype-based analysis of selective sweeps in sheep.

J. Kijas, 2014, Genome.

Polygenic and sex specific architecture for two maturation traits in farmed Atlantic salmon

Sean McWilliam, J. Kijas, Amin R. Mohamed, 2019, BMC Genomics.

Merino and Merino-derived sheep breeds: a genome-wide intercontinental study

J. Lenstra, J. Kijas, J. V. Delgado Bermejo, 2015, Genetics Selection Evolution.

Molecular basis for the dominant white phenotype in the domestic pig.

H. Rodríguez-Martínez, L. Andersson, J. Kijas, 1998, Genome research.

Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers

Zeny Z. Feng, F. Schenkel, J. Kijas, 2017, BMC Genomics.

Information compression exploits patterns of genome composition to discriminate populations and highlight regions of evolutionary interest

S. McWilliam, A. Reverter, R. Taft, 2014, BMC Bioinformatics.

to accelerate genome-to-phenome with the Functional Annotation of Genomes project.

D. Burt, S. Foissac, C. Elsik, 2015 .

Brachygnathia, cardiomegaly and renal hypoplasia syndrome (BCRHS) in Merino sheep maps to a 1.1-megabase region on ovine chromosome OAR2.

C. Wade, F. Nicholas, J. Kijas, 2013, Animal genetics.

Tracking the Emergence of a New Breed Using 49,034 SNP in Sheep

J. Kijas, N. Cockett, J. Miller, 2012, PloS one.

A Frameshift Mutation within LAMC2 Is Responsible for Herlitz Type Junctional Epidermolysis Bullosa (HJEB) in Black Headed Mutton Sheep

J. Kijas, M. Hewicker-Trautwein, O. Distl, 2011, PloS one.

Five Ovine Mitochondrial Lineages Identified From Sheep Breeds of the Near East

J. Kijas, J. Meadows, E. Gootwine, 2007, Genetics.

Molecular Cytogenetics and Gene Mapping in Sheep (Ovis aries, 2n = 54)

B. Dalrymple, J. Maddox, F. Nicholas, 2009, Cytogenetic and Genome Research.

Recent advances in sheep genomics

B. Dalrymple, J. Maddox, F. Nicholas, 2010 .

Naturally occurring rhodopsin mutation in the dog causes retinal dysfunction and degeneration mimicking human dominant retinitis pigmentosa

T. Aleman, A. Cideciyan, S. Jacobson, 2002, Proceedings of the National Academy of Sciences of the United States of America.

SNP discovery in nonmodel organisms: strand bias and base‐substitution errors reduce conversion rates

W. Barris, Sean McWilliam, J. Kijas, 2015, Molecular ecology resources.

Whole-genome resequencing of wild and domestic sheep identifies genes associated with morphological and agronomic traits

J. Lenstra, J. Kijas, D. Coltman, 2020, Nature Communications.

Whole‐genome resequencing uncovers molecular signatures of natural and sexual selection in wild bighorn sheep

G. Luikart, F. Allendorf, Sean McWilliam, 2015, Molecular ecology.