P. Hoen

发表

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories

Jeroen F. J. Laros, R. Guigó, X. Estivill, 2013, Nature Biotechnology.

Systematic identification of trans eQTLs as putative drivers of known disease associations

M. Peters, D. Hernandez, D. Melzer, 2013, Nature Genetics.

Alternative mRNA transcription, processing, and translation: insights from RNA sequencing

P. Hoen, Eleonora de Klerk, 2015 .

Unraveling the polygenic architecture of complex traits using blood eQTL metaanalysis

Sina A. Gharib, P. Visscher, T. Lehtimäki, 2018, bioRxiv.

Interspecies Translation of Disease Networks Increases Robustness and Predictive Accuracy

Allan Tucker, Peter A. C. 't Hoen, Veronica Vinciotti, 2011, PLoS Comput. Biol..

BMP antagonists enhance myogenic differentiation and ameliorate the dystrophic phenotype in a DMD mouse model

P. Hoen, Annemieke Aartsma-Rus, P. Dijke, 2011, Neurobiology of Disease.

Sequence variation between 462 human individuals fine-tunes functional sites of RNA processing

Pedro G. Ferreira, M. Rivas, R. Guigó, 2016, Scientific Reports.

Disease variants alter transcription factor levels and methylation of their binding sites

Mathieu Lemire, Morris A. Swertz, Szymon M. Kielbasa, 2015, bioRxiv.

Meta-analysis of Polycystic Kidney Disease expression 1 profiles defines strong involvement of injury repair 2 processes 3 4 5

Tareq B. Malas, P. Hoen, D. Peters, 2017 .

RNA sequencing: from tag-based profiling to resolving complete transcript structure

J. D. den Dunnen, P. Hoen, J. D. Dunnen, 2014, Cellular and Molecular Life Sciences.

TGF-β signaling in Duchenne muscular dystrophy

P. Hoen, P. Dijke, W. Hoogaars, 2012 .

Downregulation of the acetyl-CoA metabolic network in adipose tissue of obese diabetic individuals and recovery after weight loss

Jeroen F. J. Laros, H. Pijl, P. Hoen, 2014, Diabetologia.

Selective induction of cytochrome P450 3A1 by dexamethasone in cultured rat hepatocytes: analysis with a novel reverse transcriptase-polymerase chain reaction assay section sign.

P. Hoen, N. Vermeulen, T. V. van Berkel, 2000, Biochemical pharmacology.

Midazolam is a phenobarbital-like cytochrome p450 inducer in rats.

P. Hoen, N. Vermeulen, T. V. van Berkel, 2001, The Journal of pharmacology and experimental therapeutics.

Integrated Whole Genome and Transcriptome Analysis Identified a Therapeutic Minor Histocompatibility Antigen in a Splice Variant of ITGB2

M. Vermaat, P. Hoen, M. Kester, 2016, Clinical Cancer Research.

A promoter-level mammalian expression atlas

Cesare Furlanello, Finn Drabløs, Carsten O. Daub, 2015 .

Epigenome-wide Association Study of Attention-Deficit/Hyperactivity Disorder Symptoms in Adults

A. Caspi, D. Corcoran, K. Sugden, 2019, Biological Psychiatry.

Hypothesis-free identification of modulators of genetic risk factors

A. Hofman, A. Uitterlinden, M. Bonder, 2015, bioRxiv.

Fusion Transcripts without Corresponding Cytogenetic Abnormalities in Acute Myeloid Leukemia: Implications for AML Pathogenesis

P. Hoen, W. Arindrarto, S. Kiełbasa, 2017 .

PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data

Kai Ye, Peter A. C. 't Hoen, Eric-Wubbo Lameijer, 2012, Bioinform..

Refining Attention-Deficit/Hyperactivity Disorder and Autism Spectrum Disorder Genetic Loci by Integrating Summary Data From Genome-wide Association, Gene Expression, and DNA Methylation Studies

Sina A. Gharib, P. Visscher, N. Wray, 2020, Biological Psychiatry.

SplicePie: a novel analytical approach for the detection of alternative, non-sequential and recursive splicing

J. D. den Dunnen, P. Hoen, I. Pulyakhina, 2015, Nucleic acids research.

mRNA degradation controls differentiation state-dependent differences in transcript and splice variant abundance

Peter A. C. 't Hoen, Michael Hirsch, Renée X. de Menezes, 2010, Nucleic Acids Res..

Molecular signatures of age-associated chronic degeneration of shoulder muscles

P. Hoen, W. Arindrarto, S. Kiełbasa, 2016, Oncotarget.

Comprehensive diagnostics of acute myeloid leukemia by whole transcriptome RNA sequencing

P. de Knijff, P. Hoen, T. van Wezel, 2020, Leukemia.

Common pathological mechanisms in mouse models for muscular dystrophies

S. Noguchi, J. T. Dunnen, K. Campbell, 2006, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

DMD transcript imbalance determines dystrophin levels

J. T. Dunnen, P. Hoen, P. Spitali, 2013, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Fluorescent labelling of cRNA for microarray applications

Floor de Kort, P. Hoen, J. D. Dunnen, 2003 .

Literature-based priors for gene regulatory networks

Emma Steele, Allan Tucker, Peter A. C. 't Hoen, 2009, Bioinform..

Cell‐type specific regulation of myostatin signaling

P. Hoen, P. Dijke, W. Hoogaars, 2012, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Gene expression profiling highlights defective myogenesis in DMD patients and a possible role for bone morphogenetic protein 4

Renée X. de Menezes, Johan T. den Dunnen, Gert-Jan B. van Ommen, 2006, Neurobiology of Disease.

Myostatin/activin blocking combined with exercise reconditions skeletal muscle expression profile of mdx mice

P. Hoen, U. Kujala, J. Saarela, 2015, Molecular and Cellular Endocrinology.

Interplay between Tbx20, Tbx2/Tbx3 and Bmp/Smad- signaling controls compartmentalization of the developing heart tube into working chambers and the atrioventricular canal

A. Moorman, P. Hoen, H. Buermans, 2009 .

Repeated FcεRI triggering reveals modified mast cell function related to chronic allergic responses in tissue.

P. Hoen, T. Huizinga, R. Toes, 2016, The Journal of allergy and clinical immunology.

RNA sequencing: from tag-based profiling to resolving complete transcript structure

P. Hoen, J. D. Dunnen, Eleonora de Klerk, 2014, Cellular and Molecular Life Sciences.

Phd7faster: Predicting Clones Propagating Faster from the pH.D.-7 phage Display peptide Library

Peter A. C. 't Hoen, Feng-Biao Guo, Hao Lin, 2014, J. Bioinform. Comput. Biol..

Multi-omics approaches for better understanding of the downstream effects of genetic risk factors

C. Wijmenga, B. Penninx, G. Willemsen, 2016 .

University of Groningen DeepSAGE Reveals Genetic Variants Associated with Alternative Polyadenylation and Expression of Coding and Non-coding Transcripts Zhernakova,

C. Wijmenga, B. Penninx, G. Willemsen, 2013 .

Twist exome capture allows for lower average sequence coverage in clinical exome sequencing

Pieter B. T. Neerincx, Spencer J. Gibson, Farid Yavari Dizjikan, 2023, Human Genomics.

Whole Transcriptome Sequencing (RNAseq) As a Comprehensive, Cost-Efficient Diagnostic Tool for Acute Myeloid Leukemia

P. Hoen, W. Arindrarto, S. Kiełbasa, 2016 .

The interplay between genetics, the microbiome, DNA‐methylation & gene‐expression

M. Bonder, A. Zhernakova, C. Wijmenga, 2017 .

Temporal Bayesian classifiers for modelling muscular dystrophy expression data

Allan Tucker, Peter A. C. 't Hoen, Xiaohui Liu, 2006, Intell. Data Anal..

Experimental Design and Quality Control of Next-Generation Sequencing Experiments

Judith M. Boer, Peter A. C. 't Hoen, Johan T. den Dunnen, 2012 .

Muscle regeneration in dystrophin-deficient mdx mice studied by gene expression profiling

P. Hoen, R. Turk, E. Sterrenburg, 2005, BMC Genomics.

Aging as Accelerated Accumulation of Somatic Variants: Whole-Genome Sequencing of Centenarian and Middle-Aged Monozygotic Twin Pairs

Jeanine J. Houwing-Duistermaat, Victor Guryev, Eric-Wubbo Lameijer, 2013, Twin Research and Human Genetics.

Prorenin Induces Intracellular Signaling in Cardiomyocytes Independently of Angiotensin II

J. D. den Dunnen, P. Hoen, J. D. Dunnen, 2006, Hypertension.

BMP antagonists enhance myogenic differentiation and ameliorate the dystrophic phenotype in a DMD mouse model

P. Hoen, Annemieke Aartsma-Rus, P. Dijke, 2011, Neurobiology of Disease.

CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes

Peter A. C. 't Hoen, Johan T. den Dunnen, Gert-Jan B. van Ommen, 2008, BMC Bioinformatics.

SplicePie: a novel analytical approach for the detection of alternative, non-sequential and recursive splicing

J. D. den Dunnen, P. Hoen, I. Pulyakhina, 2015, Nucleic Acids Research.

Literature-based priors for gene regulatory networks

M. Schuemie, P. Hoen, A. Tucker, 2009, Bioinform..

Muscle regeneration in dystrophin-deficient mdx mice studied by gene expression profiling

P. Hoen, E. Sterrenburg, Rolf Turk, 2005, BMC Genomics.

Large-scale plasma metabolome analysis reveals alterations in HDL metabolism in migraine

Jingyuan Fu, C. Wijmenga, J. Goeman, 2019, Neurology.

A promoter-level mammalian expression atlas

Martin S. Taylor, Jay W. Shin, Thomas J. Ha, 2014, Nature.

Ten quick tips for building FAIR workflows

Pieter B. T. Neerincx, M. Swertz, P. Hoen, 2023, PLoS Comput. Biol..