N. Burroughs

发表

Sensibility of the quorum growth thresholds controlling local immune responses

N. J. Burroughs, B. M. P. M. Oliveira, Alberto A. Pinto, 2008, Math. Comput. Model..

Perturbation theory analysis of competition in a heterogeneous population

N. Burroughs, C. Utzny, 2003 .

Regulatory T cell adjustment of quorum growth thresholds and the control of local immune responses.

N. Burroughs, Bruno Miguel Paz Mendes de Oliveira, Alberto Adrego Pinto, 2006, Journal of theoretical biology.

TCR dynamics on the surface of living T cells.

N. Burroughs, S. Valitutti, B. Favier, 2001, International immunology.

Differential segregation in a cell-cell contact interface: the dynamics of the immunological synapse.

N. Burroughs, C. Wülfing, 2002, Biophysical journal.

A Virulent Strain of Deformed Wing Virus (DWV) of Honeybees (Apis mellifera) Prevails after Varroa destructor-Mediated, or In Vitro, Transmission

N. Burroughs, Jonathan D. Moore, A. Mead, 2014, PLoS pathogens.

Changes in Gene Expression in Space and Time Orchestrate Environmentally Mediated Shaping of Root Architecture[CC-BY]

Dafyd J. Jenkins, G. Coruzzi, M. Gifford, 2017, Plant Cell.

The dynamic architecture of the metabolic switch in Streptomyces coelicolor

Kay Nieselt, Rainer Breitling, Eriko Takano, 2010, BMC Genomics.

Extracting regulator activity profiles by integration of de novo motifs and expression data: characterizing key regulators of nutrient depletion responses in Streptomyces coelicolor

David A. Hodgson, Nigel J. Burroughs, N. Burroughs, 2012, Nucleic acids research.

Detection of Diffusion Heterogeneity in Single Particle Tracking Trajectories Using a Hidden Markov Model with Measurement Noise Propagation

Christopher W. Cairo, Nigel J. Burroughs, Paddy J. Slator, 2015, PloS one.

The dynamics of centromere motion through the metaphase-to-anaphase transition reveal a centromere separation order

Jonathan W. Armond, N. Burroughs, A. McAinsh, 2019, bioRxiv.

Bayesian inference of origin firing time distributions, origin interference and licencing probabilities from Next Generation Sequencing data

Conrad A. Nieduszynski, N. Burroughs, Ildem Akerman, 2019, Nucleic acids research.

The Effect of a Linear Tuning between the Antigenic Stimulations of CD4+ T Cells and CD4+ Tregs

N. Burroughs, B. Oliveira, A. Pinto, 2020, Mathematics.

Modelling the suppression of autoimmunity after pathogen infection

N. Burroughs, B. Oliveira, A. Pinto, 2018 .

Approximate equilibria for a T cell and Treg model

N. Burroughs, B. Oliveira, A. Pinto, 2016 .

Dynamics and Biological Thresholds

N. Stollenwerk, N. Burroughs, A. Pinto, 2011 .

Dynamics of Immunological Models

N. Burroughs, B. Oliveira, A. Pinto, 2010, Acta biotheoretica.

Mitotic live-cell imaging at different timescales.

P. Meraldi, N. Burroughs, A. McAinsh, 2018, Methods in cell biology.

Sub‐cellular location of FtsH proteases in the cyanobacterium S ynechocystis sp. PCC 6803 suggests localised PSII repair zones in the thylakoid membranes

C. Mullineaux, N. Burroughs, P. Nixon, 2015, Molecular microbiology.

Transcriptomic studies of phosphate control of primary and secondary metabolism in Streptomyces coelicolor

Kay Nieselt, Nigel J. Burroughs, Trond E. Ellingsen, 2012, Applied Microbiology and Biotechnology.

Automated two-dimensional Acanthamoeba polyphaga tracking and calculation of Salmonella typhimurium distribution in spatio-temporal images

N. Burroughs, E. Wellington, G. Tsibidis, 2010 .

Dynamics of T–cell antagonism: enhanced viral diversity and survival

D. Rand, N. Burroughs, 1998, Proceedings of the Royal Society of London. Series B: Biological Sciences.

Tension-clock control of human mitotic chromosome oscillations

N. Burroughs, A. McAinsh, 2022, 2207.00481.

Kinetochore tracking in 3D from lattice light-sheet imaging data with KiT

N. Burroughs, A. McAinsh, J. U. Harrison, 2022, Bioinform..

Structural-mechanical remodelling of GDP-microtubules by kinesin

N. Burroughs, R. Cross, D. Peet, 2017, bioRxiv.

1 1 Structural-mechanical remodelling of GDP-microtubules by kinesin 2 3

N. Burroughs, R. Cross, D. Peet, 2017 .

Spatial photosynthesis modelling sets guidelines to constructing a viable single-cell cytoplasm-to-stroma C4 cycle

N. Burroughs, J. Hibberd, I. Jurić, 2018, bioRxiv.

Nonequilibrium-driven motion in actin networks: comet tails and moving beads.

N. Burroughs, D. Marenduzzo, Nigel J. Burroughs, 2007, Physical review letters.

Size matters for single-cell C4 photosynthesis in Bienertia

N. Burroughs, G. Edwards, J. Hibberd, 2016, Journal of experimental botany.

Size matters for single-cell C 4 photosynthesis in Bienertia : Supplementary material ( the model )

N. Burroughs, G. Edwards, J. Hibberd, 2016 .

Solar powered biohydrogen production requires specific localization of the hydrogenase† †Electronic supplementary information (ESI) available: Supplementary Fig. 1–12 and supplementary Table 1. See DOI: 10.1039/c4ee02502d Click here for additional data file.

C. Mullineaux, N. Burroughs, P. Nixon, 2014, Energy & environmental science.

On reverse engineering of gene interaction networks using time course data with repeated measurements

Edward R. Morrissey, Katherine J. Denby, N. J. Burroughs, 2010, Bioinform..

Relationship of San Miguel sea lion virus to other members of the calicivirus group.

N. Burroughs, F. Brown, T. Doel, 1978, Intervirology.

Interactions between Salmonella typhimurium and Acanthamoeba polyphaga, and Observation of a New Mode of Intracellular Growth within Contractile Vacuoles

M. P. Gallagher, N. Burroughs, E. Wellington, 2003, Microbial Ecology.

Error correction and diversity analysis of population mixtures determined by NGS

Graham R. Wood, Nigel J. Burroughs, David J. Evans, 2014, PeerJ.

Chapter 3 : Cancer mutation processes

N. Burroughs, 2017 .

Chapter 1 : Themes and challenges in mathematics of cancer

N. Burroughs, 2017 .

Discriminating self from nonself with short peptides from large proteomes

Can Keşmir, Rob J. de Boer, N. Burroughs, 2004, Immunogenetics.

Defective deletion mutant amplification.

N. Burroughs, B. McLeod, 2000, Journal of theoretical biology.

Computational modelling predicts substantial carbon assimilation gains for C3 plants with a single-celled C4 biochemical pump

Ivan Jurić, Julian M Hibberd, Mike Blatt, 2019, PLoS Comput. Biol..

Evidence for a HURP/EB free mixed-nucleotide zone in kinetochore-microtubules

Jonathan U. Harrison, P. Meraldi, N. Burroughs, 2022, Nature Communications.

Evidence for the Intense Exchange of MazG in Marine Cyanophages by Horizontal Gene Transfer

Nigel J. Burroughs, N. Burroughs, M. Clokie, 2008, PloS one.

Highlights from the 11th ISCB Student Council Symposium 2015

Giovanni Felici, Farzana Rahman, M. Michael Gromiha, 2016, BMC Bioinformatics.

Kinetochore life histories reveal an Aurora-B-dependent error correction mechanism in anaphase

Jonathan U. Harrison, N. Burroughs, A. McAinsh, 2021, Developmental cell.

Inferring the Forces Controlling Metaphase Kinetochore Oscillations by Reverse Engineering System Dynamics

Nigel J. Burroughs, Jonathan W. Armond, Andrew D. McAinsh, 2015, PLoS Comput. Biol..

Super-resolution kinetochore tracking reveals the mechanisms of human sister kinetochore directional switching

Edward F. Harry, Nigel J Burroughs, N. Burroughs, 2015, eLife.

Probing microtubule polymerisation state at single kinetochores during metaphase chromosome motion

Nigel J. Burroughs, Jonathan W. Armond, Elina Vladimirou, 2015, Journal of Cell Science.

MosaicSolver: a tool for determining recombinants of viral genomes from pileup data

Eugene V. Ryabov, N. Burroughs, Jonathan D. Moore, 2014, Nucleic acids research.

Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies.

Aleksey Jironkin, N. Burroughs, Jonathan D. Moore, 2011, The Journal of general virology.

Actomyosin Ring Formation and Tension Generation in Eukaryotic Cytokinesis

N. Burroughs, M. Balasubramanian, T. Cheffings, 2016, Current Biology.

Microtubule-based mitotic spindles contain a micron-sized mixed-nucleotide zone

Jonathan U. Harrison, P. Meraldi, N. Burroughs, 2021, bioRxiv.

Markov chain Monte Carlo analysis of human Y-chromosome microsatellites provides evidence of biased mutation.

D. Rand, D. Rubinsztein, N. Burroughs, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Matched Sizes of Activating and Inhibitory Receptor/Ligand Pairs Are Required for Optimal Signal Integration by Human Natural Killer Cells

Nigel J. Burroughs, Karsten Köhler, Vladimir Miloserdov, 2010, PloS one.

The expression of recombinant genes in Escherichia coli can be strongly stimulated at the transcript production level by mutating the DNA‐region corresponding to the 5′‐untranslated part of mRNA

Svein Valla, Rahmi Lale, Ingrid Bakke, 2009, Microbial biotechnology.

Regulation of Gene Expression in Shewanella oneidensis MR-1 during Electron Acceptor Limitation and Bacterial Nanowire Formation

N. Burroughs, Sahand Pirbadian, K. Leung, 2016, Applied and Environmental Microbiology.

KiT: a MATLAB package for kinetochore tracking

Nigel J. Burroughs, Jonathan W. Armond, Elina Vladimirou, 2016, Bioinform..

Ensemble-Level Organization of Human Kinetochores and Evidence for Distinct Tension and Attachment Sensors

N. Burroughs, A. McAinsh, Peter A Embacher, 2019, bioRxiv.

Human kinetochores are swivel joints that mediate microtubule attachments

N. Burroughs, A. McAinsh, Chris A Smith, 2016, eLife.

Localisation and interactions of the Vipp1 protein in cyanobacteria

Mark C Leake, Nigel J Burroughs, C. Mullineaux, 2014, Molecular microbiology.

Quantifying the strength of ligand antagonism in TCR triggering

D. Rand, N. Burroughs, D. A. Rand, 2002, Bulletin of mathematical biology.

A reliable and safe T cell repertoire based on low-affinity T cell receptors.

D A Rand, D. Rand, N. Burroughs, 2001, Journal of theoretical biology.

COMPARISON OF A DUAL STRATEGY FOR T-CELL ACTIVATION UNDER INHIBITION OF THE CD4 RECEPTOR

N. Burroughs, J. Wedagedera, 2018, Journal of Biological Systems.

Stochasticity and spatial heterogeneity in T‐cell activation

N. Burroughs, P. A. van der Merwe, Nigel J. Burroughs, 2007, Immunological reviews.

Ligand detection and discrimination by spatial relocalization: A kinase-phosphatase segregation model of TCR activation.

Nigel J Burroughs, N. Burroughs, P. A. van der Merwe, 2006, Biophysical journal.

T-cell activation: A queuing theory analysis at low agonist density.

N. Burroughs, J. Wedagedera, N J Burroughs, 2006, Biophysical journal.

Interface accumulation of receptor/ligand couples in lymphocyte activation: methods, mechanisms, and significance

N. Burroughs, J. Schatzle, C. Wülfing, 2002, Immunological reviews.

Stability of a diverse immunological memory is determined by T cell population dynamics

N. Burroughs, C. Utzny, 2001, Bulletin of mathematical biology.

The disappearing soliton component of a perturbed sine-Gordon breather

N. Burroughs, 1997 .

Springs, clutches and motors: driving forward kinetochore mechanism by modelling

Elina Vladimirou, Andrew D. McAinsh, Edward F. Harry, 2011, Chromosome Research.

Metabolic Switches and Adaptations Deduced from the Proteomes of Streptomyces coelicolor Wild Type and phoP Mutant Grown in Batch Culture*

Kay Nieselt, David A. Hodgson, Nigel J. Burroughs, 2011, Molecular & Cellular Proteomics.

Correcting for link loss in causal network inference caused by regulator interference

Ying Wang, David A. Hodgson, Christopher A. Penfold, 2014, Bioinform..

Transformation from spots to waves in a model of actin pattern formation.

S. Whitelam, N. Burroughs, T. Bretschneider, 2008, Physical review letters.

Kinetochore life histories reveal the origins of chromosome mis-segregation and correction mechanisms

Jonathan U. Harrison, N. Burroughs, A. McAinsh, 2021, bioRxiv.

Three-dimensional dynamic Monte Carlo simulations of elastic actin-like ratchets.

N. Burroughs, D. Marenduzzo, 2005, The Journal of chemical physics.

Kinetochore life histories reveal an Aurora-B-dependent error correction mechanism in anaphase

N. Burroughs, A. McAinsh, J. U. Harrison, 2021, Developmental cell.

Loss of the SPHF Homologue Slr1768 Leads to a Catastrophic Failure in the Maintenance of Thylakoid Membranes in Synechocystis sp. PCC 6803

C. Mullineaux, N. Burroughs, Anja Nenninger, 2011, PloS one.

Kinesin expands and stabilises the GDP-microtubule lattice

N. Burroughs, R. Cross, D. Peet, 2018, Nature Nanotechnology.

Bayesian inference of multi-point macromolecular architecture mixtures at nanometre resolution

N. Burroughs, A. McAinsh, Peter A Embacher, 2021, bioRxiv.

Solar powered biohydrogen production requires speci ﬁ c localization of the hydrogenase †

N. Burroughs, P. Nixon, J. Appel, 2014 .

A transcritical bifurcation in an immune response model

Alberto A. Pinto, Bruno Oliveira, N. Burroughs, 2011 .

Immune response dynamics

Miguel Ferreira, N. J. Burroughs, B. M. P. M. Oliveira, 2011, Math. Comput. Model..

Autoimmunity arising from bystander proliferation of T cells in an immune response model

Miguel Ferreira, N. J. Burroughs, B. M. P. M. Oliveira, 2011, Math. Comput. Model..

Transcriptomic studies of phosphate control of primary and secondary metabolism in Streptomyces coelicolor

J. Martín, N. Burroughs, K. Nieselt, 2012, Applied Microbiology and Biotechnology.

Long-term stability of diverse immunological memory.

N. Burroughs, C. Utzny, 2001, Journal of theoretical biology.

An improved strip FRAP method for estimating diffusion coefficients: correcting for the degree of photobleaching

N. Burroughs, J Yang, K Köhler, 2009, Journal of microscopy.

A Hidden Markov Model for Detecting Confinement in Single-Particle Tracking Trajectories

Nigel J. Burroughs, Paddy J. Slator, N. Burroughs, 2018, bioRxiv.

A Hidden Markov Model for Detecting Confinement in Single Particle Tracking Trajectories

N. Burroughs, P. Slator, 2018, bioRxiv.

Highlights from the eleventh ISCB Student Council Symposium 2015

Dan F. DeBlasio, Sean J. Humphrey, P. Bertolazzi, 2016 .

Actin turnover ensures uniform tension distribution during cytokinetic actomyosin ring contraction

N. Burroughs, M. Balasubramanian, T. Cheffings, 2019, Molecular biology of the cell.

Growth of a semi-flexible polymer close to a fluctuating obstacle: application to cytoskeletal actin fibres and testing of ratchet models

N. Burroughs, D. Marenduzzo, 2006 .

Semi-automated Acanthamoeba polyphaga detection and computation of Salmonella typhimurium concentration in spatio-temporal images.

William Gaze, George D Tsibidis, Nigel J Burroughs, 2010, Micron.

Boltzmann Energy-based Image Analysis Demonstrates that Extracellular Domain Size Differences Explain Protein Segregation at Immune Synapses

Nigel J. Burroughs, Karsten Köhler, Vladimir Miloserdov, 2011, PLoS Comput. Biol..

Close contact fluctuations: The seeding of signalling domains in the immunological synapse

Nigel J Burroughs, Amit K Chattopadhyay, N. Burroughs, 2006, physics/0612142.

Mathematical Analysis of Growth and Interaction Dynamics of Streptomycetes and a Bacteriophage in Soil

N. Burroughs, E. Wellington, P. Marsh, 2000, Applied and Environmental Microbiology.

Changes in Gene Expression in Space and Time Orchestrate Environmentally Mediated Shaping of Root Architecture[CC-BY]

Dafyd J. Jenkins, G. Coruzzi, M. Gifford, 2017, Plant Cell.

Inferring the time-invariant topology of a nonlinear sparse gene regulatory network using fully Bayesian spline autoregression.

Miguel A. Juárez, N. Burroughs, K. Denby, 2011, Biostatistics.

Subcellular Euclidean distance measurements with multicolor fluorescence localization imaging in cultured cells

Jonathan U. Harrison, N. Burroughs, A. McAinsh, 2021, STAR protocols.