Haixiu Yang

发表

LncRNAs2Pathways: Identifying the pathways influenced by a set of lncRNAs of interest based on a global network propagation method

Junwei Han, Fei Su, Xia Li, 2017, Scientific Reports.

A novel dysregulated pathway-identification analysis based on global influence of within-pathway effects and crosstalk between pathways

Chunquan Li, Xia Li, Yunpeng Zhang, 2015, Journal of The Royal Society Interface.

IntNetLncSim: an integrative network analysis method to infer human lncRNA functional similarity

Haixiu Yang, Liang Cheng, Hongbo Shi, 2016, Oncotarget.

The LncRNA Connectivity Map: Using LncRNA Signatures to Connect Small Molecules, LncRNAs, and Diseases

Chunquan Li, Xia Li, Yunpeng Zhang, 2017, Scientific Reports.

A potential signature of eight long non-coding RNAs predicts survival in patients with non-small cell lung cancer

Haixiu Yang, Yinqiu Cui, D. Hao, 2015, Journal of Translational Medicine.

Identification and validation of potential prognostic lncRNA biomarkers for predicting survival in patients with multiple myeloma

Lei Yang, Haixiu Yang, Liang Cheng, 2015, Journal of Experimental & Clinical Cancer Research.

A global view of network of lncRNAs and their binding proteins.

Qianlan Yao, Haixiu Yang, Desi Shang, 2015, Molecular bioSystems.

Identification of Subtype Specific miRNA-mRNA Functional Regulatory Modules in Matched miRNA-mRNA Expression Data: Multiple Myeloma as a Case

Chunquan Li, Xia Li, Yunpeng Zhang, 2015, BioMed research international.

Integration of Multiple Genomic and Phenotype Data to Infer Novel miRNA-Disease Associations

Jing Wang, Haixiu Yang, Liang Cheng, 2016, PloS one.

Integrating gene and lncRNA expression to infer subpathway activity for tumor analyses

Yunpeng Zhang, Yanjun Xu, Tan Wu, 2017, Oncotarget.

sPAGM: inferring subpathway activity by integrating gene and miRNA expression-robust functional signature identification for melanoma prognoses

Xia Li, Yunpeng Zhang, Yanjun Xu, 2017, Scientific Reports.

Cofunctional Subpathways Were Regulated by Transcription Factor with Common Motif, Common Family, or Common Tissue

Xia Li, Yanjun Xu, Li Feng, 2015, BioMed research international.

Genome‐wide analysis of clustering patterns and flanking characteristics for plant microRNA genes

Xia Li, Qianghu Wang, Hongzhi Wang, 2011, The FEBS journal.

Rapid analysis of forchlorfenuron in fruits using molecular complex-based dispersive liquid–liquid microextraction

Haixiu Yang, Qilong Xie, Yanmei Ren, 2021, Food additives & contaminants. Part A, Chemistry, analysis, control, exposure & risk assessment.

Integrative Pathway Analysis of Genes and Metabolites Reveals Metabolism Abnormal Subpathway Regions and Modules in Esophageal Squamous Cell Carcinoma

Chunquan Li, Junwei Han, Haixiu Yang, 2017, Molecules.

Prioritizing Disease-Related Microbes Based on the Topological Properties of a Comprehensive Network

Haixiu Yang, Liang Cheng, Changlu Qi, 2021, Frontiers in Microbiology.

In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach.

Xia Li, Qianghu Wang, Yan Li, 2009, Genomics.

Global view of a drug-sensitivity gene network

Yunpeng Zhang, Yanjun Xu, Tan Wu, 2017, Oncotarget.

System level characterization of small molecule drugs and their affected long noncoding RNAs

Yunpeng Zhang, Yanjun Xu, Junwei Han, 2019, Aging.

ncDRMarker: a computational method for identifying non-coding RNA signatures of drug resistance based on heterogeneous network

Hongbo Shi, Haixiu Yang, Desi Shang, 2020, Annals of translational medicine.

MetSigDis: a manually curated resource for the metabolic signatures of diseases

Meng Zhou, Hongbo Shi, Yunpeng Zhang, 2019, Briefings Bioinform..

Subpathway-GMir: identifying miRNA-mediated metabolic subpathways by integrating condition-specific genes, microRNAs, and pathway topologies

Haixiu Yang, Desi Shang, Zeguo Sun, 2015, Oncotarget.

gutMGene: a comprehensive database for target genes of gut microbes and microbial metabolites

Haixiu Yang, Liang Cheng, Changlu Qi, 2021, Nucleic Acids Res..

The detection of risk pathways, regulated by miRNAs, via the integration of sample-matched miRNA-mRNA profiles and pathway structure

Fei Su, Xia Li, Wei Liu, 2014, J. Biomed. Informatics.

A potential signature of eight long non-coding RNAs predicts survival in patients with non-small cell lung cancer

Haixiu Yang, Yinqiu Cui, D. Hao, 2015, Journal of Translational Medicine.

LncSubpathway: a novel approach for identifying dysfunctional subpathways associated with risk lncRNAs by integrating lncRNA and mRNA expression profiles and pathway topologies

Haixiu Yang, Desi Shang, Tan Wu, 2017, Oncotarget.

Identification and validation of potential prognostic lncRNA biomarkers for predicting survival in patients with multiple myeloma

Haixiu Yang, Liang Cheng, Hongbo Shi, 2015, Journal of experimental & clinical cancer research : CR.

Identifying subpathway signatures for individualized anticancer drug response by integrating multi-omics data

Desi Shang, Yanjun Xu, Yingqi Xu, 2019, Journal of Translational Medicine.

Inferring Potential microRNA-microRNA Associations Based on Targeting Propensity and Connectivity in the Context of Protein Interaction Network

Haixiu Yang, Meng Zhou, Jie Sun, 2013, PloS one.

Subpathway-GM: identification of metabolic subpathways via joint power of interesting genes and metabolites and their topologies within pathways

Qianlan Yao, Haixiu Yang, Desi Shang, 2013, Nucleic acids research.

RNAactDrug: a comprehensive database of RNAs associated with drug sensitivity from multi-omics data

Jing Xiao, Feng Li, Haixiu Yang, 2019, Briefings Bioinform..

Global Prioritization of Disease Candidate Metabolites Based on a Multi-omics Composite Network

Junwei Han, Fei Su, Xia Li, 2015, Scientific Reports.

DisSim: an online system for exploring significant similar diseases and exhibiting potential therapeutic drugs

Yue Jiang, Hongbo Shi, Jie Sun, 2016, Scientific Reports.

Identification and comprehensive characterization of lncRNAs with copy number variations and their driving transcriptional perturbed subpathways reveal functional significance for cancer

Feng Li, Haixiu Yang, Jingwen Wang, 2019, Briefings Bioinform..

The LncRNA Connectivity Map: Using LncRNA Signatures to Connect Small Molecules, LncRNAs, and Diseases

Xia Li, Yunpeng Zhang, Yanjun Xu, 2017, Scientific Reports.

Identification of a lncRNA involved functional module for esophageal cancer subtypes.

Xia Li, Yunpeng Zhang, Yanjun Xu, 2016, Molecular bioSystems.

MPINet: Metabolite Pathway Identification via Coupling of Global Metabolite Network Structure and Metabolomic Profile

Qianlan Yao, Haixiu Yang, Desi Shang, 2014, BioMed research international.

Topologically inferring risk-active pathways toward precise cancer classification by directed random walk

Fan Zhang, Fei Su, Xia Li, 2013, Bioinform..

Prioritizing Candidate Disease Metabolites Based on Global Functional Relationships between Metabolites in the Context of Metabolic Pathways

Qianlan Yao, Haixiu Yang, Desi Shang, 2014, PloS one.

Inference of patient‐specific subpathway activities reveals a functional signature associated with the prognosis of patients with breast cancer

Yunpeng Zhang, Junwei Han, Siyao Liu, 2018, Journal of cellular and molecular medicine.

Non-coding RNAs as Novel Biomarkers in Cancer Drug Resistance.

Haixiu Yang, Liang Cheng, Changlu Qi, 2021, Current medicinal chemistry.

Identifying subpathway signatures for individualized anticancer drug response by integrating multi-omics data

Yunpeng Zhang, Yanjun Xu, Feng Li, 2019, Journal of Translational Medicine.

sPAGM: inferring subpathway activity by integrating gene and miRNA expression-robust functional signature identification for melanoma prognoses

Xia Li, Yunpeng Zhang, Yanjun Xu, 2017, Scientific Reports.

BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases

Fei Su, Xia Li, Feng Li, 2017, Database J. Biol. Databases Curation.

ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis

Junwei Han, Fei Su, Xia Li, 2015, Scientific Reports.

Time-ordered dysregulated ceRNA networks reveal disease progression and diagnostic biomarkers in ischemic and dilated cardiomyopathy

Haixiu Yang, Hongbo Shi, Guangde Zhang, 2021, Cell Death Discovery.

A novel network-based method for measuring the functional relationship between gene sets

Xiang Li, Jie Sun, Xia Li, 2011, Bioinform..

Subpathway-GMir: identifying miRNA-mediated metabolic subpathways by integrating condition-specific genes, microRNAs, and pathway topologies

Xia Li, Yunpeng Zhang, Yanjun Xu, 2015, Oncotarget.

A framework for exploring associations between biomedical terms in PubMed

Dong Wang, Lingling Zhao, Ying Zhang, 2017, Oncotarget.