P. Wirapati

Mauro Delorenzi, Jean-Paul Concordet, Olivier Delattre, 2012, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

Molecular risk assessment of BIG 1-98 participants by expression profiling using RNA from archival tissue

Rolf Jaggi, Mauro Delorenzi, Vlad Popovici, 2010, BMC Cancer.

BRAF V600E Mutant Colorectal Cancer Subtypes Based on Gene Expression

Sabine Tejpar, Stephen McLaughlin, Justin Guinney, 2016, Clinical Cancer Research.

VELOUR trial biomarkers update: Impact of RAS, BRAF, and sidedness on aflibercept activity.

P. Wirapati, S. Tejpar, J. Bridgewater, 2017, Annals of oncology : official journal of the European Society for Medical Oncology.

Molecular phenotyping of colorectal neoplasia shows dynamic and adaptive cancer stem cell population admixture

P. Wirapati, P. Dunne, L. Trusolino, 2022, bioRxiv.

Integrated Analysis of Gene Expression Profiling Studies — Examples in Breast Cancer

M. Delorenzi, P. Wirapati, D. Goldstein, 2009 .

Biological Processes Associated with Breast Cancer Clinical Outcome Depend on the Molecular Subtypes

Gianluca Bontempi, Marc Buyse, Mauro Delorenzi, 2008, Clinical Cancer Research.

Impact of Consensus Molecular Subtype on Survival in Patients With Metastatic Colorectal Cancer: Results From CALGB/SWOG 80405 (Alliance).

M. Bertagnolli, P. Wirapati, R. Goldberg, 2019, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

Chromosomal number aberrations and transformation in adult mouse retinal stem cells in vitro.

I. Stamenkovic, Y. Arsenijévic, P. Wirapati, 2009, Investigative ophthalmology & visual science.

Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer

Y. Cho, S. Yun, H. Kim, 2020, Nature Genetics.

A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6

Terence P. Speed, Henrik Bengtsson, Pratyaksha Wirapati, 2009, Bioinform..

Integrative Genome-Scale DNA Methylation Analysis of a Large and Unselected Cohort Reveals 5 Distinct Subtypes of Colorectal Adenocarcinomas

J. Pearson, G. Montgomery, N. Waddell, 2019, Cellular and molecular gastroenterology and hepatology.

Genome Scale Epigenetic Profiling Reveals Five Distinct Subtypes of Colorectal Cancer

J. Pearson, G. Montgomery, N. Waddell, 2018, bioRxiv.

Genetic editing of colonic organoids provides a molecularly distinct and orthotopic preclinical model of serrated carcinogenesis

B. Leggett, P. Wirapati, V. Whitehall, 2017, Gut.

Impact of normalization on miRNA microarray expression profiling.

Sylvain Pradervand, Johann Weber, Pratyaksha Wirapati, 2009, RNA.

Meiotic breakpoint mapping of a proposed X linked visual loss susceptibility locus in Leber's hereditary optic neuropathy.

P. Wirapati, H. Sudoyo, S. Marzuki, 1998, Journal of medical genetics.

Neutrophils suppress tumor‐infiltrating T cells in colon cancer via matrix metalloproteinase‐mediated activation of TGFβ

M. Delorenzi, G. Coukos, C. Sempoux, 2019, EMBO molecular medicine.

Consensus molecular subgroups (CMS) of colorectal cancer (CRC) and first-line efficacy of FOLFIRI plus cetuximab or bevacizumab in the FIRE3 (AIO KRK-0306) trial

W. Scheithauer, P. Wirapati, V. Heinemann, 2019, Annals of oncology : official journal of the European Society for Medical Oncology.

Test of four colon cancer risk-scores in formalin fixed paraffin embedded microarray gene expression data.

Sabine Tejpar, Eva Budinska, Simona Rossi, 2014, Journal of the National Cancer Institute.

BCL-XL is crucial for progression through the adenoma-to-carcinoma sequence of colorectal cancer

P. Wirapati, O. Sansom, S. Tejpar, 2021, Cell Death & Differentiation.

Affymetrix Whole-Transcript Human Gene 1.0 ST array is highly concordant with standard 3' expression arrays.

Sylvain Pradervand, Johann Weber, Pratyaksha Wirapati, 2008, BioTechniques.

Increased expression of urokinase-type plasminogen activator mRNA determines adverse prognosis in ErbB2-positive primary breast cancer.

M. Delorenzi, C. Benz, P. Wirapati, 2006, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

Low E2F1 transcript levels are a strong determinant of favorable breast cancer outcome

Urs Eppenberger, Mauro Delorenzi, Pratyaksha Wirapati, 2007, Breast Cancer Research.

The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases

Oliver Horlacher, Damian Szklarczyk, Christian von Mering, 2015, Nucleic Acids Res..

Better characterization of estrogen receptor (ER) positive luminal subtypes of breast cancer using genomic grade.

J. Bergh, C. Sotiriou, S. Loi, 2005 .

J Bogaerts, M. Delorenzi, M. Piccart, 2008 .

Phenotypic diversity of T cells in human primary and metastatic brain tumors revealed by multiomic interrogation

A. Hottinger, M. Hegi, P. Wirapati, 2023, Nature Cancer.

Gastrointestinal cancer—Science and clinical

G. Montgomery, N. Waddell, P. Wirapati, 2018, Journal of Gastroenterology and Hepatology.

Detecting Epistasis with Restricted Response Patterns in Pairs of Biallelic Loci

M. Delorenzi, J. Wojcik, P. Wirapati, 2011, Annals of human genetics.

Gene Expression Pro fi ling in Breast Cancer : Understanding the Molecular Basis of Histologic Grade To Improve Prognosis

C. Sotiriou, S. Loi, B. Haibe-Kains, 2006 .

LBA-005VELOUR trial biomarkers update: Impact of RAS, BRAF, and sidedness on aflibercept activity.

P. Wirapati, S. Tejpar, E. Maiello, 2017, Annals of oncology : official journal of the European Society for Medical Oncology.

Meta-analysis of gene expression profiles in breast cancer: toward a unified understanding of breast cancer subtyping and prognosis signatures

C. Sotiriou, B. Haibe-Kains, C. Desmedt, 2008, Breast Cancer Research.

Comprehensive analysis integrating both clinicopathological and gene expression data in more than 1,500 samples: Proliferation captured by gene expression grade index appears to be the strongest prognostic factor in breast cancer (BC).

C. Sotiriou, S. Loi, B. Haibe-Kains, 2006, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

CXCL9:SPP1 macrophage polarity identifies a network of cellular programs that control human cancers

Allon M. Klein, N. Hacohen, G. Getz, 2023, Science.

Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis.

M. J. van de Vijver, C. Sotiriou, S. Loi, 2006, Journal of the National Cancer Institute.

Aflibercept efficacy according to sidedness, RAS and BRAF mutations. Findings from the VELOUR trial in second line therapy of advanced colorectal cancer patients.

P. Wirapati, S. Tejpar, E. Maiello, 2017, Annals of Oncology.

The local microenvironment drives activation of neutrophils in human brain tumors

A. Hottinger, M. Hegi, P. Wirapati, 2023, Cell.

The prognostic impact of consensus molecular subtypes (CMS) and its predictive effects for bevacizumab benefit in metastatic colorectal cancer: molecular analysis of the AGITG MAX clinical trial

J. Mariadason, P. Wirapati, P. Savas, 2018, Annals of oncology : official journal of the European Society for Medical Oncology.

The local microenvironment drives activation of neutrophils in human brain tumors

A. Hottinger, M. Hegi, P. Wirapati, 2023, Cell.

The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases

Joshua L. Payne, Christian J. A. Sigrist, Brian J. Stevenson, 2015, Nucleic Acids Res..