S. Colella

发表

QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data

C. Yau, G. Mirza, J. Ragoussis, 2007, Nucleic acids research.

Genome Sequence of the Pea Aphid Acyrthosiphon pisum

G. K. Davis, David L. Steffen, Xiao Li He, 2010, PLoS biology.

A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data

Oliver Sieber, Christopher Yau, Jiannis Ragoussis, 2010, Genome Biology.

Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Bernardo J. Clavijo, T. Derrien, D. Swarbreck, 2017, Genome Biology.

Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

Robert M. Waterhouse, P. J. Moore, Barbara M. I. Vreede, 2017, Genome Biology.

Genomic insight into the amino acid relations of the pea aphid, Acyrthosiphon pisum, with its symbiotic bacterium Buchnera aphidicola

S. Colella, A. Wilson, P. Ashton, 2010, Insect molecular biology.

Multimodal dynamic response of the Buchnera aphidicola pLeu plasmid to variations in leucine demand of its host, the pea aphid Acyrthosiphon pisum

J. Fayard, S. Colella, J. Viñuelas, 2011, Molecular microbiology.

ArthropodaCyc: a BioCyc database powered by CycADS to study and compare the metabolism of arthropods

J. Huerta-Cepas, S. Colella, M. Sagot, 2011 .

Matrix-Assisted Laser Desorption/Ionisation, Time-of-Flight Mass Spectrometry in Genomics Research

J. Ragoussis, S. Colella, K. Kaur, 2006, PLoS genetics.

Direct flow cytometry measurements reveal a fine-tuning of symbiotic cell dynamics according to the host developmental needs in aphid symbiosis

S. Colella, J. Viñuelas, F. Calevro, 2016, Scientific Reports.

A clonally reproducing generalist aphid pest colonises diverse host plants by rapid transcriptional plasticity of duplicated gene clusters

Bernardo J. Clavijo, T. Derrien, D. Swarbreck, 2016, bioRxiv.

A Genomic Reappraisal of Symbiotic Function in the Aphid/Buchnera Symbiosis: Reduced Transporter Sets and Variable Membrane Organisations

S. Colella, A. Latorre, F. Calevro, 2011, PloS one.

Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

P. J. Moore, Barbara M. I. Vreede, R. Gibbs, 2017, bioRxiv.

Molecular evolutionary trends and 1 feeding ecology diversification in the Hemiptera , 2 anchored by the milkweed bug genome 3 4 5

Chris, P. J. Moore, Han, 2017 .

Alterations in the CSB gene in three Italian patients with the severe form of Cockayne syndrome (CS) but without clinical photosensitivity.

S. Colella, A. Lehmann, D. Mallery, 1999, Human molecular genetics.

Responses of mature symbiotic nodules to the whole-plant systemic nitrogen signaling

M. Martin-Magniette, S. Colella, P. Tillard, 2020, Journal of experimental botany.

Functional and Evolutionary Genomics in Aphids

S. Colella, T. Gabaldón, D. Tagu, 2015 .

The anatomy of an aphid genome: from sequence to biology.

S. Colella, D. Tagu, C. Rispe, 2010, Comptes rendus biologies.

New insight into the RNA interference response against cathepsin-L gene in the pea aphid, Acyrthosiphon pisum: molting or gut phenotypes specifically induced by injection or feeding treatments.

S. Colella, F. Calevro, H. Charles, 2014, Insect biochemistry and molecular biology.

Tyrosine pathway regulation is host-mediated in the pea aphid symbiosis during late embryonic and early larval development

S. Colella, F. Calevro, H. Charles, 2013, BMC Genomics.

LRRTM1 protein is located in the endoplasmic reticulum (ER) in mammalian cells

D. Geschwind, D. Rujescu, P. Muglia, 2007, Molecular Psychiatry.

Reduced expression of the Aalpha subunit of protein phosphatase 2A in human gliomas in the absence of mutations in the Aalpha and Abeta subunit genes.

P. Kleihues, H. Ohgaki, S. Colella, 2001, International journal of cancer.

Correction: Genome Sequence of the Pea Aphid Acyrthosiphon pisum

R. Guigó, Hsiu-Chuan Chen, N. Gerardo, 2018, PLoS biology.

Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Bernardo J. Clavijo, T. Derrien, D. Swarbreck, 2017, Genome Biology.

Autoregulation dependent and independent mechanisms are responsible for the systemic control of nodule formation by the plant N demand

M. Martin-Magniette, S. Colella, M. Lepetit, 2021, bioRxiv.

Mutation analysis of hBUB1, hBUBR1 and hBUB3 genes in glioblastomas

Mitsutoshi Nakamura, Y. Yonekawa, P. Kleihues, 2001, Acta Neuropathologica.

DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models

M. Martin-Magniette, S. Colella, Ilana Lambert, 2019, Plant Methods.

Identification and characterization of Vietnamese coffee bacterial endophytes displaying in vitro antifungal and nematicidal activities.

H. X. Nguyen, S. Colella, R. Duponnois, 2020, Microbiological research.

ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods

Toni Gabaldón, Jaime Huerta-Cepas, Federica Calevro, 2016, Database J. Biol. Databases Curation.

α‐Haemoglobin stabilising protein is a quantitative trait gene that modifies the phenotype of β‐thalassaemia

J. Ragoussis, S. Colella, M. Weiss, 2006 .

N-(4-Hydroxyphenyl)retinamide and nitric oxide pro-drugs exhibit apoptotic and anti-invasive effects against bone metastatic breast cancer cells.

S. Colella, A. Tari, A. Simeone, 2006, Carcinogenesis.

Altered Intra-Nuclear Organisation of Heterochromatin and Genes in ICF Syndrome

J. Ragoussis, E. Volpi, G. Gimelli, 2010, PloS one.

LRRTM1 on chromosome 2p12 is a maternally suppressed gene that is associated paternally with handedness and schizophrenia

D. Geschwind, D. Rujescu, P. Muglia, 2007, Molecular Psychiatry.

The transposable element-rich genome of the cereal pest Sitophilus oryzae

A. Smit, A. Moya, R. Hubley, 2021, BMC Biology.

hsa-miR-210 Is Induced by Hypoxia and Is an Independent Prognostic Factor in Breast Cancer

Carme Camps, Jiannis Ragoussis, Francesca M. Buffa, 2008, Clinical Cancer Research.

Sensitive and quantitative universal Pyrosequencing methylation analysis of CpG sites.

K A Baggerly, K. Baggerly, J. Issa, 2003, BioTechniques.

Genome-Wide Hypomethylation in Head and Neck Cancer Is More Pronounced in HPV-Negative Tumors and Is Associated with Genomic Instability

K. Baggerly, S. Colella, K. Richards, 2009, PloS one.

Loss of Heterozygosity on Chromosome 10 Is More Extensive in Primary (De Novo) Than in Secondary Glioblastomas

Stefano Colella, Yasuhiro Yonekawa, Mitsutoshi Nakamura, 2000, Laboratory Investigation.

MicroRNA-10b and breast cancer metastasis

Carme Camps, Jiannis Ragoussis, Stefano Colella, 2008, Nature.

Mutation analysis of hBUB1, hBUBR1 and hBUB3 genes in glioblastomas

Mitsutoshi Nakamura, Y. Yonekawa, P. Kleihues, 2001, Acta Neuropathologica.

Gene expression profiling of low-grade diffuse astrocytomas by cDNA arrays.

M. Kurrer, Y. Yonekawa, P. Kleihues, 2000, Cancer research.

Host‐specific competitiveness to form nodules in Rhizobium leguminosarum symbiovar viciae

S. Colella, M. Lepetit, M. Pervent, 2019, The New phytologist.

The genome of the cereal pest Sitophilus oryzae: a transposable element haven

A. Smit, A. Moya, R. Hubley, 2021 .

Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Bernardo J. Clavijo, T. Derrien, D. Swarbreck, 2017, Genome Biology.

GenoSNP: a variational Bayes within-sample SNP genotyping algorithm that does not require a reference population

Eleni Giannoulatou, Christopher Yau, Christopher C. Holmes, 2008, Bioinform..

Systemic analysis of the symbiotic function of Buchnera aphidicola, the primary endosymbiont of the pea aphid Acyrthosiphon pisum.

Ludovic Cottret, Marie-France Sagot, Federica Calevro, 2009, Comptes rendus biologies.

Alpha-haemoglobin stabilising protein is a quantitative trait gene that modifies the phenotype of beta-thalassaemia.

J. Ragoussis, S. Colella, M. Weiss, 2006, British journal of haematology.

Genome‐wide loss of heterozygosity analysis of WT1–wild‐type and WT1‐mutant Wilms tumors

S. Colella, R. Krahe, V. Huff, 2005, Genes, chromosomes & cancer.

Bacteriocyte Reprogramming to Cope With Nutritional Stress in a Phloem Sap Feeding Hemipteran, the Pea Aphid Acyrthosiphon pisum

P. Callaerts, S. Colella, F. Calevro, 2018, Front. Physiol..

Tyrosine pathway regulation is host-mediated in the pea aphid symbiosis during late embryonic and early larval development

S. Colella, F. Calevro, H. Charles, 2013, BMC Genomics.

Disruption of phenylalanine hydroxylase reduces adult lifespan and fecundity, and impairs embryonic development in parthenogenetic pea aphids

P. Callaerts, S. Colella, F. Calevro, 2016, Scientific Reports.

CycADS: an annotation database system to ease the development and update of BioCyc databases

Ludovic Cottret, Toni Gabaldón, Jaime Huerta-Cepas, 2011, Database J. Biol. Databases Curation.

Molecular signatures of metastasis in head and neck cancer

Ralf Krahe, Spiridon Tsavachidis, Keith A Baggerly, 2008, Head & neck.

Molecular analysis of mutations in the CSB (ERCC6) gene in patients with Cockayne syndrome.

S. Colella, H. Steingrimsdottir, A. Lehmann, 1998, American journal of human genetics.

Gene Expression Profiling of Low-Grade Diffuse Astrocytomas by cDNA Arrays 1

M. Kurrer, Y. Yonekawa, P. Kleihues, 2000 .

Cloning a new human gene from chromosome 21q22.3 encoding a glutamic acid-rich protein expressed in heart and skeletal muscle

D. Nižetić, S. Colella, R. Taramelli, 1997, Human Genetics.

Identical mutations in the CSB gene associated with either Cockayne syndrome or the DeSanctis-cacchione variant of xeroderma pigmentosum.

S. Colella, A. Lehmann, M. Stefanini, 2000, Human molecular genetics.

Reduced expression of the Aα subunit of protein phosphatase 2A in human gliomas in the absence of mutations in the Aα and Aβ subunit genes

Mitsutoshi Nakamura, P. Kleihues, H. Ohgaki, 2001 .

Prenatal diagnosis of 30 fetuses at risk for fragile X syndrome.

S. Colella, F. Bricarelli, G. Piombo, 1996, American journal of medical genetics.

Erratum: Mutation analysis of hBUB1, hBUBR1 and hBUB3 genes in glioblastomas (Acta Neuropathologica (2001) vol. 101 (297-304))

Mitsutoshi Nakamura, Y. Yonekawa, P. Kleihues, 2001 .

Direct flow cytometry measurements reveal a fine-tuning of symbiotic cell dynamics according to the host developmental needs in aphid symbiosis

S. Colella, J. Viñuelas, F. Calevro, 2016, Scientific Reports.

LRRTM1 on chromosome 2p12 is a maternally suppressed gene that is associated paternally with handedness and schizophrenia

D. Geschwind, D. Rujescu, P. Muglia, 2007, Molecular Psychiatry.

A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data

C. Yau, G. Mirza, J. Ragoussis, 2010, Genome Biology.

Analyzing Multifactorial RNA-Seq Experiments with DicoExpress.

S. Colella, B. Castandet, Kevin Baudry, 2022, Journal of visualized experiments : JoVE.

DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models

M. Martin-Magniette, S. Colella, Ilana Lambert, 2020, Plant Methods.