Heewook Lee

发表

A highly annotated whole-genome sequence of a Korean individual

Thomas D. Wu, Ryan E. Mills, Ryan W. Kim, 2009, Nature.

Accurate Assembly and Typing of HLA using a Graph-Guided Assembler Kourami.

Heewook Lee, Carl Kingsford, 2018, Methods in molecular biology.

Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery

Heewook Lee, Carl Kingsford, 2018, Genome Biology.

Adaptation of Escherichia coli to long-term batch culture in various rich media.

Haixu Tang, Heewook Lee, S. Finkel, 2018, Research in microbiology.

Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species

Erich Bornberg-Bauer, Peer Bork, Alexandre Souvorov, 2010, Science.

Rates of Mutations and Transcript Errors in the Foodborne Pathogen Salmonella enterica subsp. enterica

Heewook Lee, Yan Wang, Xiang Gao, 2022, Molecular biology and evolution.

Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing

Haixu Tang, Ellen Popodi, Patricia L. Foster, 2012, Proceedings of the National Academy of Sciences.

Graph-guided assembly for novel HLA allele discovery

Heewook Lee, Carl Kingsford, 2017, bioRxiv.

Draft Genome Sequence of Caedibacter varicaedens, a Kappa Killer Endosymbiont Bacterium of the Ciliate Paramecium biaurelia

M. Lynch, Heewook Lee, Haruo Suzuki, 2015, Genome Announcements.

Identification of Microbiota-Induced Gene Expression Changes in the Drosophila melanogaster Head

Heewook Lee, Carl Kingsford, N. Hiller, 2019, bioRxiv.

The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes

Haixu Tang, Heewook Lee, P. Foster, 2019, mBio.

Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing

E. Popodi, Haixu Tang, Heewook Lee, 2015, Proceedings of the National Academy of Sciences.

DNA Replication-Transcription Conflicts Do Not Significantly Contribute to Spontaneous Mutations Due to Replication Errors in Escherichia coli

Heewook Lee, P. Foster, Brittany A. Niccum, 2021, bioRxiv.

Strand-biased cytosine deamination at the replication fork causes cytosine to thymine mutations in Escherichia coli

Haixu Tang, Heewook Lee, A. Bhagwat, 2016, Proceedings of the National Academy of Sciences.

GeneclusterViz: a tool for conserved gene cluster visualization, exploration and analysis

Sun Kim, Jaehyun An, Jeong-Hyeon Choi, 2012, Bioinform..

Next-generation sequencing technologies and fragment assembly algorithms.

Haixu Tang, Heewook Lee, Haixu Tang, 2012, Methods in molecular biology.

New complexities of SOS-induced “untargeted” mutagenesis in Escherichia coli as revealed by mutation accumulation and whole-genome sequencing

Haixu Tang, Heewook Lee, P. Foster, 2020, bioRxiv.

On the Mutational Topology of the Bacterial Genome

Haixu Tang, Patricia L. Foster, E. Popodi, 2013, G3: Genes, Genomes, Genetics.

PiTE: TCR-epitope Binding Affinity Prediction Pipeline using Transformer-based Sequence Encoder.

Heewook Lee, Seo-Jin Bang, Pengfei Zhang, 2022, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery

Heewook Lee, Carl Kingsford, 2018, Genome Biology.

Background Mutational Features of the Radiation-Resistant Bacterium Deinococcus radiodurans.

M. Lynch, W. Sung, Haixu Tang, 2015, Molecular biology and evolution.

Adaptation of Escherichia coli to Long-Term Serial Passage in Complex Medium: Evidence of Parallel Evolution

Haixu Tang, Heewook Lee, S. Finkel, 2017, mSystems.

The symmetrical pattern of base-pair substitutions rates across the chromosome in Escherichia coli has multiple causes

Haixu Tang, Heewook Lee, P. Foster, 2019, bioRxiv.

Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli

E. Popodi, Haixu Tang, Heewook Lee, 2016, Nucleic acids research.

ATM-TCR: TCR-Epitope Binding Affinity Prediction Using a Multi-Head Self-Attention Model

Heewook Lee, Michael Cai, Seo-Jin Bang, 2022, Frontiers in immunology.

TCR-epitope binding afﬁnity prediction using multi-head self attention model

Heewook Lee, Michael Cai, Seo-Jin Bang, 2021 .

Antibiotic treatment enhances the genome-wide mutation rate of target cells

M. Lynch, Heewook Lee, Hongan Long, 2016, Proceedings of the National Academy of Sciences.

Genomic and Metagenomic Analysis of Diversity-Generating Retroelements Associated with Treponema denticola

Heewook Lee, Yuzhen Ye, T. Doak, 2016, Front. Microbiol..

Context-Aware Amino Acid Embedding Advances Analysis of TCR-Epitope Interactions

Heewook Lee, Michael Cai, Seo-Jin Bang, 2023, bioRxiv.

The Spectrum of Replication Errors in the Absence of Error Correction Assayed Across the Whole Genome of Escherichia coli

Haixu Tang, Heewook Lee, P. Foster, 2018, Genetics.

Determinants of Base-Pair Substitution Patterns Revealed by Whole-Genome Sequencing of DNA Mismatch Repair Defective Escherichia coli

E. Popodi, Haixu Tang, Heewook Lee, 2018, Genetics.

Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species

Timothy B Sackton, Robert M. Waterhouse, Andrew K. Jones, 2010, Science.

Detection of Structural Variants Involving Repetitive Regions in the Reference Genome

Haixu Tang, Heewook Lee, Ellen Popodi, 2014, J. Comput. Biol..