I. Mizrahi

发表

Recycler: an algorithm for detecting plasmids from de novo assembly graphs

Eran Halperin, Ron Shamir, Roye Rozov, 2016, bioRxiv.

Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants

B. White, N. Shterzer, I. Mizrahi, 2016, The ISME Journal.

Context-dependent dynamics lead to the assembly of functionally distinct pitcher-plant microbiomes

Otto X. Cordero, I. Mizrahi, G. Leventhal, 2019, bioRxiv.

Microbiome niche modification drives diurnal rumen community assembly, overpowering individual variability and diet effects

I. Mizrahi, J. Miron, Y. Shaani, 2018, The ISME Journal.

Scotland ' s Rural College Addressing global ruminant agricultural challenges through understanding the rumen microbiome : past , present and future

R. Dewhurst, G. Suen, J. Edwards, 2018 .

Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future

R. Dewhurst, G. Suen, J. Edwards, 2018, Front. Microbiol..

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

P. B. Pope, I. Mizrahi, J. Šimůnek, 2015, Scientific Reports.

On reducing complexity of deep sequencing data analysis

E. Halperin, R. Shamir, A. Kav, 2018 .

Erratum: Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

Min Wang, Bo Lin, Chris McSweeney, 2016, Scientific Reports.

A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions

E. Halperin, P. Taberlet, J. Williams, 2019, Science Advances.

Potential Role of the Bovine Rumen Microbiome in Modulating Milk Composition and Feed Efficiency

Itzhak Mizrahi, Bryan A. White, B. White, 2014, PloS one.

The Road Not Taken: The Rumen Microbiome, Functional Groups, and Community States.

I. Mizrahi, Sarah Moraïs, 2019, Trends in microbiology.

Diet Supplementation With Pomegranate Peel Extract Altered Odorants Emission From Fresh and Incubated Calves' Feces

N. Shterzer, I. Mizrahi, Shiri Freilich, 2018, Front. Sustain. Food Syst..

Rapid adaptation for fibre degradation by changes in plasmid stoichiometry within Lactobacillus plantarum at the synthetic community level

E. Bayer, I. Mizrahi, Sarah Moraïs, 2020, Microbial biotechnology.

Modeling the temporal dynamics of the gut microbial community in adults and infants

Eran Halperin, Liat Shenhav, Leah Briscoe, 2017, bioRxiv.

A combined cell-consortium approach for lignocellulose degradation by specialized Lactobacillus plantarum cells

E. Bayer, N. Shterzer, I. Mizrahi, 2014, Biotechnology for Biofuels.

Man-made microbial resistances in built environments

David Bogumil, I. Mizrahi, T. Rattei, 2019, Nature Communications.

Establishment of a Simple Lactobacillus plantarum Cell Consortium for Cellulase-Xylanase Synergistic Interactions

E. Bayer, N. Shterzer, I. Mizrahi, 2013, Applied and Environmental Microbiology.

Mapping the deformability of natural and designed cellulosomes in solution

B. Różycki, E. Bayer, I. Mizrahi, 2021, Biotechnology for Biofuels and Bioproducts.

Dietary salt levels affect digestibility, intestinal gene expression, and the microbiome, in Nile tilapia (Oreochromis niloticus)

I. Mizrahi, S. Harpaz, Fotini Kokou, 2018, PloS one.

Metaproteome plasticity sheds light on the ecology of the rumen microbiome and its connection to host traits

E. Bayer, I. Mizrahi, Goor Sasson, 2022, The ISME Journal.

The origin and distribution of the main oxygen sensing mechanism across metazoans

I. Mizrahi, B. Song, W. Martin, 2022, Frontiers in Physiology.

SCAPP: an algorithm for improved plasmid assembly in metagenomes

R. Shamir, I. Mizrahi, M. Probst, 2020, Microbiome.

Unravelling plasmidome distribution and interaction with its hosting microbiome.

E. Halperin, S. Sørensen, R. Shamir, 2019, Environmental microbiology.

Concepts and Consequences of a Core Gut Microbiota for Animal Growth and Development.

L. H. Hagen, I. Mizrahi, R. Roehe, 2021, Annual review of animal biosciences.

Asgard ESCRT-III and VPS4 reveal conserved chromatin binding properties of the ESCRT machinery

P. Schwille, I. Mizrahi, R. Zarivach, 2022, The ISME journal.

Short- and long-term low-salinity acclimation effects on the branchial and intestinal gene expression in the European seabass (Dicentrarchus labrax).

I. Mizrahi, A. Barki, Fotini Kokou, 2019, Comparative biochemistry and physiology. Part A, Molecular & integrative physiology.

Potential Use of Toxic Thermolabile Proteins To Study Protein Quality Control Systems

I. Mizrahi, D. Biran, E. Ron, 2007, Applied and Environmental Microbiology.

Tools for the study of protein quality control systems: use of truncated homoserine trans-succinylase as a model substrate for ATP-dependent proteolysis in Escherichia coli.

I. Mizrahi, D. Biran, E. Ron, 2007, Journal of microbiological methods.

A link between genotype and cellular architecture in microbiome members as revealed by cryo-EM

I. Mizrahi, O. Medalia, R. Zalk, 2022, bioRxiv.

Cell-surface display of designer cellulosomes by Lactobacillus plantarum.

E. Bayer, I. Mizrahi, J. Stern, 2019, Methods in enzymology.

Differential effects of co-chaperonin homologs on cpn60 oligomers

I. Mizrahi, A. Azem, A. Niv, 2009, Cell Stress and Chaperones.

Effects of adding a concentrated pomegranate-residue extract to the ration of lactating cows on in vivo digestibility and profile of rumen bacterial population.

I. Mizrahi, M. Nikbachat, E. Yosef, 2012, Journal of dairy science.

Islands in the stream: from individual to communal fiber degradation in the rumen ecosystem

I. Mizrahi, Sarah Moraïs, 2019, FEMS microbiology reviews.

Towards lactic acid bacteria-based biorefineries.

Roberto Mazzoli, Edward A. Bayer, Itzhak Mizrahi, 2014, Biotechnology advances.

Insights into the bovine rumen plasmidome

Adi Doron-Faigenboim, Itzhak Mizrahi, Aya Brown Kav, 2012, Proceedings of the National Academy of Sciences.

Effect of wheat hay particle size and replacement of wheat hay with wheat silage on rumen pH, rumination and digestibility in ruminally cannulated non-lactating cows.

I. Mizrahi, M. Nikbachat, E. Yosef, 2017, Animal : an international journal of animal bioscience.

Scotland's Rural College Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present and future Huws,

R. Dewhurst, G. Suen, J. Edwards, 2018 .

Composition and Similarity of Bovine Rumen Microbiota across Individual Animals

I. Mizrahi, E. Jami, Elie Jami, 2012, PloS one.

Review: The compositional variation of the rumen microbiome and its effect on host performance and methane emission.

I. Mizrahi, E. Jami, Elie Jami, 2018, Animal : an international journal of animal bioscience.

Protozoa populations are ecosystem engineers that shape prokaryotic community structure and function of the rumen microbial ecosystem

I. Mizrahi, Tamar Zehavi, E. Jami, 2020, bioRxiv.

Effect of feeding long or short wheat hay v. wheat silage in the ration of lactating cows on intake, milk production and digestibility.

I. Mizrahi, M. Nikbachat, E. Yosef, 2017, Animal : an international journal of animal bioscience.

Exploring the bovine rumen bacterial community from birth to adulthood

I. Mizrahi, E. Jami, Adi Israel, 2013, The ISME Journal.

Lysozyme activity of the Ruminococcus champanellensis cellulosome.

E. Bayer, I. Mizrahi, H. Flint, 2016, Environmental microbiology.

Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells

A. Schintlmeister, M. Wagner, P. Fowler, 2014, Proceedings of the National Academy of Sciences.

Calcium Handling in Human Induced Pluripotent Stem Cell Derived Cardiomyocytes

Jackie Schiller, Itzhak Mizrahi, Lior Gepstein, 2011, PloS one.

Scalable production of cardiomyocytes derived from c-Myc free induced pluripotent stem cells.

Itzhak Mizrahi, Lior Gepstein, I. Mizrahi, 2011, Tissue engineering. Part A.

Stochasticity constrained by deterministic effects of diet and age drive rumen microbiome assembly dynamics

Otto X. Cordero, E. Halperin, I. Mizrahi, 2020, Nature Communications.

FEAST: fast expectation-maximization for microbial source tracking

Eran Halperin, Liat Shenhav, Mike Thompson, 2019, Nature Methods.

Compositional and functional dynamics of the bovine rumen methanogenic community across different developmental stages

I. Mizrahi, E. Jami, N. Friedman, 2017, Environmental microbiology.

The rumen microbiome: balancing food security and environmental impacts

I. Mizrahi, R. Wallace, Sarah Moraïs, 2021, Nature Reviews Microbiology.

Heritable Bovine Rumen Bacteria Are Phylogenetically Related and Correlated with the Cow’s Capacity To Harvest Energy from Its Feed

E. Halperin, B. White, N. Shterzer, 2017, mBio.

Antibiotic effect and microbiome persistence vary along the European seabass gut

I. Mizrahi, Goor Sasson, Fotini Kokou, 2020, Scientific Reports.

Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities

Victòria Pascal Andreu, P. Pevzner, D. Bickhart, 2022, Nature Biotechnology.

Involvement of dietary salt in shaping bacterial communities in European sea bass (Dicentrarchus labrax)

Haifeng Sun, I. Mizrahi, S. Harpaz, 2013, Scientific Reports.

The Role of the Rumen Microbiota in Determining the Feed Efficiency of Dairy Cows

I. Mizrahi, 2012 .

Core gut microbial communities are maintained by beneficial interactions and strain variability in fish

I. Mizrahi, Jonathan Friedman, Goor Sasson, 2019, Nature Microbiology.

Asgard ESCRT-III and VPS4 reveal evolutionary conserved chromatin binding properties of the ESCRT machinery

I. Mizrahi, R. Zarivach, D. Nachmias, 2021, bioRxiv.

Insights Into Culturomics of the Rumen Microbiome

I. Mizrahi, M. Probst, Tamar Zehavi, 2018, Front. Microbiol..

Man-made microbial resistances in built environments

David Bogumil, I. Mizrahi, T. Rattei, 2019, Nature Communications.

Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities

Victòria Pascal Andreu, P. Pevzner, D. Bickhart, 2022, Nature Biotechnology.

FEAST: fast expectation-maximization for microbial source tracking

E. Halperin, I. Pe’er, David Bogumil, 2019, Nature Methods.

Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome

B. Henrissat, E. Bayer, I. Mizrahi, 2016, Environmental microbiology.

Functional phylotyping approach for assessing intraspecific diversity of Ruminococcus albus within the rumen microbiome.

B. White, E. Bayer, I. Mizrahi, 2015, FEMS microbiology letters.

Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance

I. Mizrahi, T. Dagan, Nils F. Hülter, 2019, Nature Communications.

Segregational Drift and the Interplay between Plasmid Copy Number and Evolvability

P. Rosenstiel, I. Mizrahi, Giddy Landan, 2018, bioRxiv.

Nanoscale resolution of microbial fiber degradation in action

Y. Bomble, E. Bayer, I. Mizrahi, 2021, bioRxiv.

A method for purifying high quality and high yield plasmid DNA for metagenomic and deep sequencing approaches.

I. Mizrahi, I. Benhar, Aya Brown Kav, 2013, Journal of microbiological methods.

The animal gut as a melting pot for horizontal gene transfer.

N. Shterzer, I. Mizrahi, 2015, Canadian journal of microbiology.

A method to the madness

I. Mizrahi, E. Jami, 2021, EMBO reports.

Diet‐induced changes of redox potential underlie compositional shifts in the rumen archaeal community

E. Ruppin, I. Mizrahi, Thomer Durman, 2017, Environmental microbiology.

Stochasticity constrained by deterministic effects of diet and age drive rumen microbiome assembly dynamics

Otto X. Cordero, E. Halperin, T. Hertz, 2020, Nature Communications.

On the oligomeric state of chloroplast chaperonin 10 and chaperonin 20.

I. Mizrahi, A. Lustig, A. Azem, 2003, Biochimica et biophysica acta.

GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser

Allegra T. Aron, Scott A. Jarmusch, P. Dorrestein, 2021, Nature Methods.

Algorithmic Learning for Auto-deconvolution of GC-MS Data to Enable Molecular Networking within GNPS

Wout Bittremieux, Alexander A. Aksenov, Yann Guitton, 2020, bioRxiv.

Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data

Wout Bittremieux, Zheng Zhang, Yann Guitton, 2020, Nature Biotechnology.

Mammalian gut metabolomes mirror microbiome composition and host phylogeny

P. Dorrestein, I. Mizrahi, Goor Sasson, 2021, The ISME Journal.

Involvement of the Pta-AckA pathway in protein folding and aggregation.

I. Mizrahi, D. Biran, E. Ron, 2009, Research in microbiology.

Requirement for the acetyl phosphate pathway in Escherichia coli ATP‐dependent proteolysis

I. Mizrahi, D. Biran, E. Ron, 2006, Molecular microbiology.

Evaluation of Automated Ribosomal Intergenic Spacer Analysis for Bacterial Fingerprinting of Rumen Microbiome Compared to Pyrosequencing Technology

N. Shterzer, I. Mizrahi, E. Jami, 2014, Pathogens.

Context-dependent dynamics lead to the assembly of functionally distinct microbial communities

Otto X. Cordero, I. Mizrahi, G. Leventhal, 2020, Nature Communications.

Assembly of Synthetic Functional Cellulosomal Structures onto the Cell Surface of Lactobacillus plantarum, a Potent Member of the Gut Microbiome

E. Bayer, I. Mizrahi, R. Lamed, 2018, Applied and Environmental Microbiology.

Context-dependent dynamics lead to the assembly of functionally distinct microbial communities

Otto X. Cordero, I. Mizrahi, G. Leventhal, 2020, Nature Communications.

Host genetic selection for cold tolerance shapes microbiome 1 composition and modulates its response to temperature 2

I. Mizrahi, Goor Sasson, A. Doron-Faigenboim, 2022 .

The rumen plasmidome

I. Mizrahi, 2012, Mobile genetic elements.

Transcriptome Analysis Reveals Common and Differential Response to Low Temperature Exposure Between Tolerant and Sensitive Blue Tilapia (Oreochromis aureus)

I. Mizrahi, A. Doron-Faigenboim, Fotini Kokou, 2019, Front. Genet..

Effect of feeding ensiled mixture of pomegranate pulp and drier feeds on digestibility and milk performance in dairy cows

I. Mizrahi, R. Solomon, M. Nikbachat, 2015, Journal of Dairy Research.

Effects of including NaOH-treated corn straw as a substitute for wheat hay in the ration of lactating cows on performance, digestibility, and rumen microbial profile.

N. Shterzer, I. Mizrahi, M. Nikbachat, 2014, Journal of Dairy Science.

GNPS Dashboard: Collaborative Analysis of Mass Spectrometry Data in the Web Browser

Allegra T. Aron, Scott A. Jarmusch, P. Dorrestein, 2021, bioRxiv.

Affinity-induced covalent protein-protein ligation via the SpyCatcher-SpyTag interaction

E. Bayer, I. Mizrahi, J. Fierer, 2023, Green Carbon.

Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance

I. Mizrahi, T. Dagan, Nils F. Hülter, 2019, Nature Communications.

Phylogenetic diversity of core rumen microbiota as described by cryo-ET

I. Mizrahi, O. Medalia, R. Zalk, 2023, microLife.

I. Mizrahi, Elie Jami, 2012, Anaerobe.

Lysozyme activity of the Ruminococcus champanellensis cellulosome.

E. Bayer, I. Mizrahi, H. Flint, 2016, Environmental microbiology.

Host genetic selection for cold tolerance shapes microbiome composition and modulates its response to temperature

I. Mizrahi, Goor Sasson, A. Doron-Faigenboim, 2018, eLife.

Plasmids in the human gut reveal neutral dispersal and recombination that is overpowered by inflammatory diseases

I. Mizrahi, S. Pilosof, David Pellow, 2024, Nature communications.

Plasmid-encoded toxin defence mediates mutualistic microbial interactions

I. Mizrahi, Tamar Zehavi, Jens Walter, 2023, Nature microbiology.

The underappreciated diversity of bile acid modifications

Allegra T. Aron, P. Dorrestein, I. Mizrahi, 2024, Cell.

Towards lactic acid bacteria-based biorefineries.

E. Bayer, I. Mizrahi, F. Bosco, 2014, Biotechnology advances.

A cellulosomal double‐dockerin module from Clostridium thermocellum shows distinct structural and cohesin‐binding features

I. Mizrahi, Q. Cui, Yingang Feng, 2024, Protein science : a publication of the Protein Society.

Erratum: Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

Min Wang, I. Mizrahi, J. Šimůnek, 2016, Scientific Reports.