I. Kukavica-Ibrulj

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Genomics of antibiotic‐resistance prediction in Pseudomonas aeruginosa

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2017, Annals of the New York Academy of Sciences.

Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium

Geoffrey L. Winsor, Robert E. W. Hancock, Fiona S. L. Brinkman, 2015, Front. Microbiol..

Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa.

Julian Parkhill, Michael A Quail, Alexandra Bignell, 2008, Genome research.

Comparative genomics and biological characterization of sequential Pseudomonas aeruginosa isolates from persistent airways infection

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2015, BMC Genomics.

Draft genomes of 12 host-adapted and environmental isolates of Pseudomonas aeruginosa and their positions in the core genome phylogeny.

Shabhonam Caim, Paul A Hoskisson, Brian Boyle, 2014, Pathogens and disease.

In Vivo Growth of Pseudomonas aeruginosa Strains PAO1 and PA14 and the Hypervirulent Strain LESB58 in a Rat Model of Chronic Lung Infection

George A. O'Toole, Roger C. Levesque, I. Kukavica-Ibrulj, 2007, Journal of bacteriology.

Signature-tagged mutagenesis.

I. Kukavica-Ibrulj, R. Levesque, R. Lévesque, 2014, Methods in molecular biology.

Essential genes in the infection model of Pseudomonas aeruginosa PCR-based signature-tagged mutagenesis.

I. Kukavica-Ibrulj, R. Levesque, F. Sanschagrin, 2008, Methods in molecular biology.

Molybdate transporter ModABC is important for Pseudomonas aeruginosa chronic lung infection

J. Jeukens, I. Kukavica-Ibrulj, R. Levesque, 2016, BMC Research Notes.

In vivo functional genomics of Pseudomonas aeruginosa for high-throughput screening of new virulence factors and antibacterial targets.

I. Kukavica-Ibrulj, R. Levesque, K. L. Richard, 2003, Environmental microbiology.

The Widespread Multidrug-Resistant Serotype O12 Pseudomonas aeruginosa Clone Emerged through Concomitant Horizontal Transfer of Serotype Antigen and Antibiotic Resistance Gene Clusters

L. Freschi, I. Kukavica-Ibrulj, R. Levesque, 2015, mBio.

The Salmonella enterica Plasmidome as a Reservoir of Antibiotic Resistance

M. Wiedmann, J. Jeukens, L. Freschi, 2020, Microorganisms.

Hepatitis A virus attachment to agri‐food surfaces using immunological, virological and thermodynamic assays

I. Kukavica-Ibrulj, I. Fliss, J. Jean, 2004, Journal of applied microbiology.

Assessing Pseudomonas aeruginosa virulence and the host response using murine models of acute and chronic lung infection.

I. Kukavica-Ibrulj, R. Levesque, A. Bragonzi, 2014, Methods in molecular biology.

Whole-Genome Sequencing of Lactobacillus Species from Two Commercial Probiotic Products

J. Jeukens, I. Kukavica-Ibrulj, J. Emond‐Rheault, 2017, Genome Announcements.

AnCo3, a New Member of the Emerging Family of Phage-Like Plasmids

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2017, Genome Announcements.

Draft Genome Sequences of Two Clostridium botulinum Group II Strains Carrying Phage-Like Plasmids

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2022, Microbiology resource announcements.

Andrée-Ann and Jeukens , Julie and Kukavica-Ibrulj ,

J. Jeukens, I. Kukavica-Ibrulj, N. Tucker, 2018 .

Genes Required for Free Phage Production are Essential for Pseudomonas aeruginosa Chronic Lung Infections.

J. Jeukens, I. Kukavica-Ibrulj, N. Tucker, 2016, The Journal of infectious diseases.

Comparative genomics of a drug-resistant Pseudomonas aeruginosa panel and the challenges of antimicrobial resistance prediction from genomes

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2017, FEMS microbiology letters.

A multi-host approach to identify a transposon mutant of Pseudomonas aeruginosa LESB58 lacking full virulence

I. Kukavica-Ibrulj, Cynthia Gagné-Thivierge, S. Charette, 2018, BMC Research Notes.

Genomic characterisation of an international Pseudomonas aeruginosa reference panel indicates that the two major groups draw upon distinct mobile gene pools

F. Brinkman, J. Jeukens, L. Freschi, 2018, FEMS microbiology letters.

Complete Genome Sequences of Three Pseudomonas aeruginosa Isolates with Phenotypes of Polymyxin B Adaptation and Inducible Resistance

I. Kukavica-Ibrulj, R. Hancock, B. Boyle, 2012, Journal of bacteriology.

Identification of novel pathogenicity genes by PCR signature-tagged mutagenesis and related technologies.

I. Kukavica-Ibrulj, É. Potvin, F. Sanschagrin, 2004, Methods in molecular biology.

Infection with Human Metapneumovirus Predisposes Mice to Severe Pneumococcal Pneumonia

M. Bergeron, I. Kukavica-Ibrulj, G. Boivin, 2008, Journal of Virology.

Essential genes in the infection model of Pseudomonas aeruginosa-PCR-based signature-tagged mutagenesis.

I. Kukavica-Ibrulj, R. Lévesque, 2015, Methods in molecular biology.

Comparative Genomics of Isolates of a Pseudomonas aeruginosa Epidemic Strain Associated with Chronic Lung Infections of Cystic Fibrosis Patients

J. Jeukens, I. Kukavica-Ibrulj, N. Tucker, 2014, PloS one.

Salmonella enterica Prophage Sequence Profiles Reflect Genome Diversity and Can Be Used for High Discrimination Subtyping

M. Wiedmann, J. Jeukens, L. Freschi, 2018, Front. Microbiol..

Draft Genome Sequences of Two Lipopeptide-Producing Strains of Bacillus methylotrophicus

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2015, Genome Announcements.

Draft Genome Sequence of Triclosan-Resistant Cystic Fibrosis Isolate Achromobacter xylosoxidans CF304

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2015, Genome Announcements.

Immunofluorescent detection and quantitation of hepatitis A virus in sewage treatment effluent and on agri-food surfaces using scanning confocal microscopy.

I. Kukavica-Ibrulj, I. Fliss, A. Darveau, 2003, Journal of virological methods.

Effectiveness of commercial disinfectants for inactivating hepatitis A virus on agri-food surfaces.

I. Kukavica-Ibrulj, I. Fliss, J. Jean, 2003, Journal of food protection.

Model-informed drug development in pulmonary delivery: Preclinical pharmacokinetic-pharmacodynamic modelling for evaluation of treatments against chronic Pseudomonas aeruginosa lung infections.

Christel A. S. Bergström, I. Kukavica-Ibrulj, L. Friberg, 2020, Molecular pharmaceutics.

Characterization of Alanine Catabolism in Pseudomonas aeruginosa and Its Importance for Proliferation In Vivo

I. Kukavica-Ibrulj, Megan L. Boulette, M. Whiteley, 2009, Journal of bacteriology.

Functional genomics of PycR, a LysR family transcriptional regulator essential for maintenance of Pseudomonas aeruginosa in the rat lung.

I. Kukavica-Ibrulj, F. Sanschagrin, B. Boyle, 2008, Microbiology.

Animal models of chronic lung infection with Pseudomonas aeruginosa: useful tools for cystic fibrosis studies

I. Kukavica-Ibrulj, R. Lévesque, 2008, Laboratory animals.

A Pan-Genomic Approach to Understand the Basis of Host Adaptation in Achromobacter

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2017, Genome biology and evolution.

Reservoirs of resistance: polymyxin resistance in veterinary-associated companion animal isolates of Pseudomonas aeruginosa

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2019, Veterinary Record.

Model-Based Drug Development in Pulmonary Delivery: Pharmacokinetic Analysis of Novel Drug Candidates for Treatment of Pseudomonas aeruginosa Lung Infection

Christel A. S. Bergström, I. Kukavica-Ibrulj, M. Cámara, 2019, Journal of pharmaceutical sciences.

Prophage induction reduces Shiga toxin producing Escherichia coli (STEC) and Salmonella enterica on tomatoes and spinach: A model study

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2018, Food Control.

The Pseudomonas aeruginosa Pan-Genome Provides New Insights on Its Population Structure, Horizontal Gene Transfer, and Pathogenicity

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2018, Genome biology and evolution.

OP-GBEV180261 109..120

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2019 .

Prophage Integrase Typing Is a Useful Indicator of Genomic Diversity in Salmonella enterica

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2017, Front. Microbiol..

A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis

Ismail Fliss, Yann Joly, Sylvain Moineau, 2017, Front. Microbiol..

Genomic characterisation of environmental Pseudomonas aeruginosa isolated from dental unit waterlines revealed the insertion sequence ISPa11 as a chaotropic element

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2017, FEMS microbiology ecology.

BAC library construction, screening and clone sequencing of lake whitefish (Coregonus clupeaformis, Salmonidae) towards the elucidation of adaptive species divergence

L. Bernatchez, J. Jeukens, I. Kukavica-Ibrulj, 2011, Molecular ecology resources.

Hit Identification of New Potent PqsR Antagonists as Inhibitors of Quorum Sensing in Planktonic and Biofilm Grown Pseudomonas aeruginosa

Christel A. S. Bergström, Shailesh N Mistry, I. Kukavica-Ibrulj, 2020, Frontiers in Chemistry.

Proteomic, Microarray, and Signature-Tagged Mutagenesis Analyses of Anaerobic Pseudomonas aeruginosa at pH 6.5, Likely Representing Chronic, Late-Stage Cystic Fibrosis Airway Conditions

M. Lieberman, D. Hunt, D. Hassett, 2008, Journal of bacteriology.

Comparative genomics and biological characterization of sequential Pseudomonas aeruginosa isolates from persistent airways infection

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2015, BMC Genomics.

Transmission, adaptation and geographical spread of the Pseudomonas aeruginosa Liverpool epidemic strain

N. Loman, J. Jeukens, L. Freschi, 2021, Microbial genomics.

Combining Whole-Genome Sequencing and Multimodel Phenotyping To Identify Genetic Predictors of Salmonella Virulence

C. Greenwood, I. Kukavica-Ibrulj, J. Emond‐Rheault, 2020, mSphere.

Salmonella enterica subsp. enterica virulence potential can be linked to higher survival within a dynamic in vitro human gastrointestinal model.

I. Kukavica-Ibrulj, J. Emond‐Rheault, D. Malo, 2022, Food microbiology.

Complete Genome Sequence of Persistent Cystic Fibrosis Isolate Pseudomonas aeruginosa Strain RP73

J. Jeukens, I. Kukavica-Ibrulj, B. Tümmler, 2013, Genome Announcements.

The Pseudomonas aeruginosa Population among Cystic Fibrosis Patients in Quebec, Canada: a Disease Hot Spot without Known Epidemic Isolates

J. Jeukens, L. Freschi, I. Kukavica-Ibrulj, 2019, Journal of Clinical Microbiology.

Requirement of the Pseudomonas aeruginosa CbrA Sensor Kinase for Full Virulence in a Murine Acute Lung Infection Model

Olga M. Pena, Robert E. W. Hancock, Roger C. Levesque, 2013, Infection and Immunity.

Temperate phages enhance pathogen fitness in chronic lung infection

I. Kukavica-Ibrulj, M. Brockhurst, Chloe E. James, 2016, The ISME Journal.

Design and Evaluation of New Quinazolin-4(3H)-one Derived PqsR Antagonists as Quorum Sensing Quenchers in Pseudomonas aeruginosa.

Christel A S Bergstrom, I. Kukavica-Ibrulj, J. Emsley, 2021, ACS infectious diseases.

Molybdate transporter ModABC is important for Pseudomonas aeruginosa chronic lung infection

J. Jeukens, I. Kukavica-Ibrulj, S. Charette, 2016, BMC Research Notes.

The Lon Protease Is Essential for Full Virulence in Pseudomonas aeruginosa

I. Kukavica-Ibrulj, P. Taylor, R. Hancock, 2012, PloS one.

Detection of human metapneumovirus antigens in nasopharyngeal aspirates using an enzyme immunoassay

I. Kukavica-Ibrulj, G. Boivin, 2008, Journal of Clinical Virology.

A multi-host approach to identify a transposon mutant of Pseudomonas aeruginosa LESB58 lacking full virulence

I. Kukavica-Ibrulj, Cynthia Gagné-Thivierge, S. Charette, 2018, BMC Research Notes.

Proteomic, Microarray, and Signature-Tagged Mutagenesis Analyses of Anaerobic Pseudomonas aeruginosa at pH 6.5, Likely Representing Chronic, Late-Stage Cystic Fibrosis Airway Conditions

M. Lieberman, D. Hunt, D. Hassett, 2008, Journal of bacteriology.

Rapid on-site detection of harmful algal blooms: real-time cyanobacteria identification using Oxford Nanopore sequencing

I. Kukavica-Ibrulj, V. Mohit, R. Lévesque, 2023, Frontiers in Microbiology.

Model-Based Drug Development in Pulmonary Delivery: Pharmacokinetic Analysis of Novel Drug Candidates for Treatment of Pseudomonas aeruginosa Lung Infection

Christel A. S. Bergström, I. Kukavica-Ibrulj, M. Cámara, 2019, Journal of Pharmacy and Science.

Evolution and host-specific adaptation of Pseudomonas aeruginosa

I. Kukavica-Ibrulj, A. P. Pandurangan, R. Floto, 2024, Science.

Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa.

A. Bignell, M. Quail, D. Saunders, 2008, Genome research.