N. Shah

发表

PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using Physical Views and Parallel Coordinates

Jitendra Malik, Hans Hagen, Bernd Hamann, 2006, EuroVis.

Characterization of TMPRSS2:ETV5 and SLC45A3:ETV5 gene fusions in prostate cancer.

S. Varambally, A. Chinnaiyan, S. Tomlins, 2008, Cancer research.

An anatomic transcriptional atlas of human glioblastoma

Fuhui Long, Eric Olson, Nameeta Shah, 2018, Science.

Integration of Transcriptomic and Proteomic Data for Disease Insights

Raksha A. Ganesh, S. Jayaram, R. Sirdeshmukh, 2017 .

Multi-Omics Analysis of Glioblastoma and Glioblastoma Cell Line: Molecular Insights Into the Functional Role of GPR56 and TG2 in Mesenchymal Transition

Raksha A. Ganesh, G. Sathe, R. Sirdeshmukh, 2022, Frontiers in Oncology.

Exploration of the gene fusion landscape of glioblastoma using transcriptome sequencing and copy number data

N. Shah, Jae-Geun Yoon, G. Foltz, 2013, BMC Genomics.

A Cell-Surface Membrane Protein Signature for Glioblastoma.

Cory C. Funk, John C. Earls, L. Hood, 2017, Cell systems.

Validation of a Point-of-Care Optical Coherence Tomography Device with Machine Learning Algorithm for Detection of Oral Potentially Malignant and Malignant Lesions

Sumsum P. Sunny, N. Shah, P. Wilder-Smith, 2021, Cancers.

PointCloudXplore : Visual Analysis of 3 D Gene Expression Data Using Linked Physical and Abstract Data Views

M. Eisen, D. Sudar, B. Hamann, 2006 .

Volume Visualization of Multiple Alignment of Genomic DNA

Scott E. Dillard, B. Hamann, G. Weber, 2004 .

Phylo-VISTA: An Interactive Visualization Tool for Multiple DNA Sequence Alignments

Bernd Hamann, Inna Dubchak, Michael Brudno, 2003 .

Software SNP-VISTA: An interactive SNP visualization tool

B. Hamann, I. Dubchak, L. Pennacchio, 2006 .

MGMT methylation in glioblastoma: tale of the tail.

C. Cobbs, N. Shah, Brett Schroeder, 2015, Neuro-oncology.

Tamoxifen improves cytopathic effect of oncolytic adenovirus in primary glioblastoma cells mediated through autophagy

C. Cobbs, N. Shah, Jae-Geun Yoon, 2015, Oncotarget.

Gelatin methacrylate hydrogels culture model for glioblastoma cells enriches for mesenchymal-like state and models interactions with immune cells

Raksha A. Ganesh, R. Puchalski, N. Shah, 2021, Scientific Reports.

Mesenchymal-like glioma cells are enriched in the gelatin methacrylate hydrogels

Raksha A. Ganesh, R. Puchalski, N. Shah, 2021, bioRxiv.

Phylo-VISTA: interactive visualization of multiple DNA sequence alignments

Bernd Hamann, Inna Dubchak, Michael Brudno, 2004, Bioinform..

Glioblastoma radiomics: can genomic and molecular characteristics correlate with imaging response patterns?

R. Puchalski, L. Miller, R. Strowd, 2018, Neuroradiology.

Comprehensive Analysis of MGMT Promoter Methylation: Correlation with MGMT Expression and Clinical Response in GBM

T. Ryken, N. Shah, Jae-Geun Yoon, 2011, PloS one.

Interactive visualization and model-based analysis of genomics data

Bernd Hamann, Nameeta Shah, Vladimir Filkov, 2006 .

SNP-VISTA: An interactive SNP visualization tool

Bernd Hamann, Inna Dubchak, Nameeta Shah, 2005, BMC Bioinformatics.

Proteogenomic Analysis of Breast Cancer Transcriptomic and Proteomic Data, Using De Novo Transcript Assembly: Genome-Wide Identification of Novel Peptides and Clinical Implications

Lavanya Balakrishnan, R. Sirdeshmukh, N. Shah, 2022, Molecular & cellular proteomics : MCP.

Rare but Recurrent ROS1 Fusions Resulting From Chromosome 6q22 Microdeletions are Targetable Oncogenes in Glioma

Erwin G. Van Meir, M. Ladanyi, R. Somwar, 2018, Clinical Cancer Research.

Large-Scale Production of Human Glioblastoma-Derived Cancer Stem Cell Tissue in Suspension Bioreactors to Facilitate the Development of Novel Oncolytic Therapeutics

Nameeta Shah, Leroy Hood, Leo A. Behie, 2011 .

Volume Visualization of Multiple Alignment of Large Genomic DNA

Bernd Hamann, Gunther H. Weber, Nameeta Shah, 2004, Mathematical Foundations of Scientific Visualization, Computer Graphics, and Massive Data Exploration.

Astrocytes promote progression of breast cancer metastases to the brain via a KISS1-mediated autophagy

N. Shah, D. Welch, A. Karseladze, 2017, Autophagy.

Immuno-Phenotyping of High-Grade Glioma Infiltrating Immune Cells Reveals Grade Specific Differences in Cells of Myeloid Origin

Raksha A. Ganesh, N. Shah, S. Jhunjhunwala, 2020, bioRxiv.

Identification of a Novel Splice Variant of Neural Cell Adhesion Molecule in Glioblastoma Through Proteogenomics Analysis.

Raksha A. Ganesh, Lavanya Balakrishnan, S. Jayaram, 2018, Omics : a journal of integrative biology.

Genetic investigation of multicentric glioblastoma multiforme: case report.

Brendan J. McCullough, C. Cobbs, N. Shah, 2016, Journal of neurosurgery.

Immuno-phenotyping of IDH-mutant grade 3 astrocytoma and IDH-wildtype glioblastoma reveals specific differences in cells of myeloid origin

Raksha A. Ganesh, N. Shah, S. Jhunjhunwala, 2021, Oncoimmunology.

MT1-MMP silencing by an shRNA-armed glioma-targeted conditionally replicative adenovirus (CRAd) improves its anti-glioma efficacy in vitro and in vivo.

C. Cobbs, N. Shah, I. Ulasov, 2015, Cancer letters.

Oral epithelial cell segmentation from fluorescent multichannel cytology images using deep learning

Asif Iqbal Khan, Sumsum P. Sunny, N. Shah, 2022, Comput. Methods Programs Biomed..

Bioprocessing of human glioblastoma brain cancer tissue.

Nameeta Shah, Leroy Hood, Leo A. Behie, 2010, Tissue engineering. Part A.

Characterization of TMPRSS2:ETV5 and SLC45A3:ETV5 gene fusions in prostate cancer.

S. Varambally, A. Chinnaiyan, S. Tomlins, 2008, Cancer research.

Astrocytes promote progression of breast cancer metastases to the brain via a KISS1-mediated autophagy

N. Shah, D. Welch, A. Karseladze, 2017, Autophagy.

Inferring Cis-region Hierarchies from Patterns in Time-Course Gene Expression Data

Nameeta Shah, Vladimir Filkov, V. Filkov, 2004, Regulatory Genomics.

Glioblastoma radiomics: can genomic and molecular characteristics correlate with imaging response patterns?

R. Puchalski, L. Miller, R. Strowd, 2018, Neuroradiology.