M. Shapovalov

发表

A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions.

Roland L. Dunbrack, M. Shapovalov, 2011, Structure.

The Rosetta all-atom energy function for macromolecular modeling and design

Roland L. Dunbrack, Jason W. Labonte, Jeffrey J. Gray, 2017, bioRxiv.

Neighbor-Dependent Ramachandran Probability Distributions of Amino Acids Developed from a Hierarchical Dirichlet Process Model

Michael I. Jordan, Guoli Wang, Roland L. Dunbrack, 2010, PLoS Comput. Biol..

Conformation dependence of backbone geometry in proteins.

Roland L. Dunbrack, P. Karplus, M. Shapovalov, 2009, Structure.

Statistical and conformational analysis of the electron density of protein side chains

Roland L. Dunbrack, M. Shapovalov, 2006, Proteins.

proteins STRUCTURE O FUNCTION O BIOINFORMATICS Improved prediction of protein side-chain conformations with SCWRL4

Roland L. Dunbrack, M. Shapovalov, Georgii G. Krivov, 2022 .

The Rosetta all-atom energy function for macromolecular modeling and design

Roland L. Dunbrack, Richard Bonneau, P. Douglas Renfrew, 2017, bioRxiv.

Nonplanar peptide bonds in proteins are common and conserved but not biased toward active sites

Roland L. Dunbrack, P. Karplus, M. Shapovalov, 2011, Proceedings of the National Academy of Sciences.

Statistical analysis of interface similarity in crystals of homologous proteins.

Zoran Obradovic, Adrian A Canutescu, Roland L Dunbrack, 2008, Journal of molecular biology.

Stability engineering of anti-EGFR scFv antibodies by rational design of a lambda-to-kappa swap of the VL framework using a structure-guided approach

Roland L. Dunbrack, M. Shapovalov, A. Lehmann, 2015, mAbs.

A New Clustering and Nomenclature for Beta Turns Derived from High-Resolution Protein Structures

Roland L. Dunbrack, S. Vucetic, M. Shapovalov, 2018, bioRxiv.

Development of a rotamer library for use in beta-peptide foldamer computational design.

Roland L Dunbrack, Roland L. Dunbrack, Scott J. Shandler, 2010, Journal of the American Chemical Society.

BioAssemblyModeler (BAM): User-Friendly Homology Modeling of Protein Homo- and Heterooligomers

Roland L. Dunbrack, M. Shapovalov, Qifang Xu, 2014, PloS one.

The age-metallicity relation in the thin disk of the galaxy

M. Shapovalov, V. A. Marsakov, V. V. Koval’, 2011 .

A new clustering and nomenclature for beta turns derived from high-resolution protein structures

Roland L Dunbrack, Slobodan Vucetic, Roland L. Dunbrack, 2018, bioRxiv.

Growing Glycans in Rosetta: Accurate de novo glycan modeling, density fitting, and rational sequon design

Jason W. Labonte, Jeffrey J. Gray, Daniel W. Kulp, 2021, bioRxiv.

Biological function derived from predicted structures in CASP11

Roland L Dunbrack, Qifang Xu, Roland L. Dunbrack, 2016, Proteins.

A forward-looking suggestion for resolving the stereochemical restraints debate: ideal geometry functions.

Roland L Dunbrack, Roland L. Dunbrack, P Andrew Karplus, 2008, Acta crystallographica. Section D, Biological crystallography.

Vancomycin forms ligand-mediated supramolecular complexes.

M. Shapovalov, P. Loll, P. Axelsen, 2009, Journal of molecular biology.

BioDownloader: bioinformatics downloads and updates in a few clicks

Roland L. Dunbrack, Adrian A. Canutescu, Maxim V. Shapovalov, 2007, Bioinform..

Multifaceted analysis of training and testing convolutional neural networks for protein secondary structure prediction

Slobodan Vucetic, Roland L. Dunbrack, Maxim Shapovalov, 2020, bioRxiv.

A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions.

Roland L. Dunbrack, M. Shapovalov, 2011, Structure.

Improved prediction of protein side‐chain conformations with SCWRL4

Roland L. Dunbrack, R. Dunbrack, M. Shapovalov, 2009, Proteins.

Minimal ensembles of side chain conformers for modeling protein–protein interactions

Roland L Dunbrack, Roland L. Dunbrack, Dima Kozakov, 2012, Proteins.

Optical spectrum of the post-AGB Star HD56126 in the wavelength interval 4010-8790 Å Å

M. Shapovalov, E. Chentsov, V. Klochkova, 2007, 0704.0677.

Proteins: Structure, Function, and Bioinformatics

Roland L. Dunbrack, O. Keskin, M. Shapovalov, 2009 .