Jingyuan Deng

发表

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data

P. Linsley, A. Shalek, R. Gottardo, 2015, Genome Biology.

Distance measurements via the morphogen gradient of Bicoid in Drosophila embryos

L. Lu, Jingyuan Deng, David Cheung, 2010, BMC Developmental Biology.

Exploring the Optimal Strategy to Predict Essential Genes in Microbes

L. Lu, Jingyuan Deng, Xiaodong Lin, 2011, Biomolecules.

A Two-Dimensional Simulation Model of the Bicoid Gradient in Drosophila

L. Lu, Jingyuan Deng, Jun Ma, 2010, PloS one.

Probing intrinsic properties of a robust morphogen gradient in Drosophila.

Jingyuan Deng, Ying Wen, Xiaodong Lin, 2008, Developmental cell.

A Statistical Framework for Improving Genomic Annotations of Prokaryotic Essential Genes

Daniel J. Hassett, Jingyuan Deng, Xiaodong Lin, 2013, PloS one.

QKI 6 ameliorates CIRI through promoting synthesis of triglyceride in neuron and inhibiting neuronal apoptosis associated with SIRT1‐PPARγ‐PGC‐1α axis

Jingyuan Deng, R. Liu, Hong-zeng Li, 2021, Brain and behavior.

QKI 6 ameliorates CIRI through promoting synthesis of triglyceride in neuron and inhibiting neuronal apoptosis associated with SIRT1‐PPARγ‐PGC‐1α axis

Jingyuan Deng, Rui Liu, Hong-zeng Li, 2020, bioRxiv.

Predicting essential genes for identifying potential drug targets in Aspergillus fumigatus

Yao Lu, Jingyuan Deng, Hui Lu, 2014, Comput. Biol. Chem..

Chapter 15 Network Analysis in Translational Research

L. Lu, Minlu Zhang, Jingyuan Deng, 2012 .

SERPINB3/B4 contributes to early inflammation and barrier dysfunction in an experimental murine model of atopic dermatitis

Jingyuan Deng, M. Medvedovic, M. Lindsey, 2014, The Journal of investigative dermatology.

Up‐regulation of micro‐RNA765 in human failing hearts is associated with post‐transcriptional regulation of protein phosphatase inhibitor‐1 and depressed contractility

Tracy J. Pritchard, Jingyuan Deng, R. Hajjar, 2015, European journal of heart failure.

In utero gene expression in the Slc39a8(neo/neo) knockdown mouse

Jingyuan Deng, D. Nebert, J. Chen, 2018, Scientific Reports.

Molecular Network Analysis and Applications

Xiao Zhang, Jingyuan Deng, Minlu Zhang, 2010 .

A Drosophila model of the neurodegenerative disease SCA17 reveals a role of RBP-J/Su(H) in modulating the pathological outcome.

L. Lu, B. Aronow, A. Jegga, 2011, Human molecular genetics.

An integrated machine-learning model to predict prokaryotic essential genes.

Jingyuan Deng, Jingyuan Deng, 2015, Methods in molecular biology.

Investigating the predictability of essential genes across distantly related organisms using an integrative approach

A. Minai, L. Lu, Minlu Zhang, 2012, Nucleic Acids Research.

Investigating the predictability of essential genes across distantly related organisms using an integrative approach

Ali A. Minai, Daniel J. Hassett, Jingyuan Deng, 2010, Nucleic acids research.

A network-based approach to associate High Density Lipoprotein (HDL)''s subspeciation with its cardiovascular protective functions

Jingyuan Deng, 2012 .

SUPPLEMENTAL METHODS AND EXTENDED DERIVATIONS

P. Linsley, A. Shalek, Greg Finak, 2015 .

A novel essential domain perspective for exploring gene essentiality

Yao Lu, Hai Peng, Yulan Lu, 2015, Bioinform..

Discovering essential domains in essential genes.

L. Lu, Hui Lu, Jingyuan Deng, 2015, Methods in molecular biology.

BMP4 Enhances Foam Cell Formation by BMPR-2/Smad1/5/8 Signaling

Jingyuan Deng, L. Dang, Jun Feng, 2014, International journal of molecular sciences.

Computational Methods for the Prediction of Microbial Essential Genes

Yao Lu, Matthew B. Carson, Jingyuan Deng, 2014 .

Multi-dimensional Co-separation Analysis Reveals Protein–Protein Interactions Defining Plasma Lipoprotein Subspecies*

Jingyuan Deng, Amy S. Shah, Jingyuan Deng, 2013, Molecular & Cellular Proteomics.

Proteomic characterization of human plasma high density lipoprotein fractionated by gel filtration chromatography.

Jingyuan Deng, Jingyuan Deng, W. Davidson, 2010, Journal of proteome research.

Network Analysis in Translational Research

Jingyuan Deng, Minlu Zhang, Ye Chen, 2012 .

A statistical framework for improving genomic annotations of transposon mutagenesis (TM) assigned essential genes.

Jingyuan Deng, Jingyuan Deng, 2015, Methods in molecular biology.

Network-Based Analysis on Orthogonal Separation of Human Plasma Uncovers Distinct High Density Lipoprotein Complexes.

Jingyuan Deng, Debi K. Swertfeger, Scott M. Gordon, 2015, Journal of proteome research.

Overexpression of Dimethylarginine Dimethylaminohydrolase 1 Attenuates Airway Inflammation in a Mouse Model of Asthma

Jingyuan Deng, M. Medvedovic, B. Day, 2014, PloS one.

miR-21 attenuates lipopolysaccharide-induced lipid accumulation and inflammatory response: potential role in cerebrovascular disease

Jingyuan Deng, L. Dang, Jun Feng, 2014, Lipids in Health and Disease.

Proteomic characterization of human plasma high density lipoprotein fractionated by gel filtration chromatography.

Jingyuan Deng, L. J. Lu, Scott M. Gordon, 2010, Journal of proteome research.

Up‐regulation of micro‐RNA765 in human failing hearts is associated with post‐transcriptional regulation of protein phosphatase inhibitor‐1 and depressed contractility

Tracy J. Pritchard, Jingyuan Deng, R. Hajjar, 2015, European journal of heart failure.