S. Subramanian

发表

Sudhir Kumar, S. Subramanian, Sankar Subramanian, 2002, Proceedings of the National Academy of Sciences of the United States of America.

A genomic history of Aboriginal Australia

Søren Brunak, Anders Eriksson, Thomas Mailund, 2016, Nature.

Ancient mtDNA sequences from the First Australians revisited

Michael C. Westaway, Joanne L. Wright, C. Millar, 2016, Proceedings of the National Academy of Sciences.

Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks.

Sudhir Kumar, S. Subramanian, K. Tamura, 2003, Molecular biology and evolution.

The genome of the oyster Saccostrea offers insight into the environmental resilience of bivalves

Min Zhao, S. Subramanian, W. O'Connor, 2018, DNA research : an international journal for rapid publication of reports on genes and genomes.

Whole-genome analyses resolve early branches in the tree of life of modern birds

Md. Shamsuzzoha Bayzid, D. Haussler, Huanming Yang, 2014, Science.

Evolutionary anatomies of positions and types of disease-associated and neutral amino acid mutations in the human genome

Sudhir Kumar, S. Subramanian, 2006, BMC Genomics.

Ground tit genome reveals avian adaptation to living at high altitudes in the Tibetan plateau

Yuan Zhang, Ruiqiang Li, Hongmei Zhu, 2013, Nature Communications.

Patterns of transitional mutation biases within and among mammalian genomes.

Sudhir Kumar, Sudhir Kumar, M. Rosenberg, 2003, Molecular biology and evolution.

Gene Expression Intensity Shapes Evolutionary Rates of the Proteins Encoded by the Vertebrate Genome

Sudhir Kumar, Sudhir Kumar, S. Subramanian, 2004, Genetics.

The effects of sample size on population genomic analyses – implications for the tests of neutrality

S. Subramanian, Sankar Subramanian, Sankar Subramanian, 2016, BMC Genomics.

Submitted as Research Article for publication in Molecular Biology and Evolution)

J. Elser, W. Fagan, Sudhir Kumar, 2006 .

Greenlip Abalone (Haliotis laevigata) Genome and Protein Analysis Provides Insights into Maturation and Spawning

N. G. Elliott, A. Reverter, Min Zhao, 2019, G3: Genes, Genomes, Genetics.

Selection against Amino Acid Replacements in Human Proteins

S. Subramanian, 2008 .

Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment

Chris M Rands, C. Ponting, Huanming Yang, 2014, GigaScience.

The Difference in the Proportions of Deleterious Variations within and between Populations Influences the Estimation of FST

S. Subramanian, 2021, Genes.

VCF2PopTree: a one-click client-side software to construct population phylogeny from genome-wide SNPs

S. Subramanian, David Chen, Umayal Ramasamy, 2019 .

Nearly Neutrality and the Evolution of Codon Usage Bias in Eukaryotic Genomes

S. Subramanian, Sankar Subramanian, 2008, Genetics.

Deleterious mutation load in diverse cattle breeds of the world

S. Subramanian, Sankar Subramanian, 2021 .

The Long-Term Evolutionary History of Gradual Reduction of CpG Dinucleotides in the SARS-CoV-2 Lineage

S. Subramanian, 2021, Biology.

‘Fishing’ for Mitochondrial DNA in The Egyptian Sacred Ibis Mummies

C. Millar, S. Subramanian, D. Lambert, 2018, bioRxiv.

Mitogenomic diversity in Sacred Ibis Mummies sheds light on early Egyptian practices

C. Millar, B. Holland, S. Subramanian, 2019, bioRxiv.

Genomic sequence of a ranavirus (family Iridoviridae) associated with salamander mortalities in North America.

Sudhir Kumar, S. Subramanian, E. Davidson, 2003, Virology.

Ancient nuclear genomes enable repatriation of Indigenous human remains

Michael C. Westaway, Joanne L. Wright, S. Rasmussen, 2018, Science Advances.

New developments in ancient genomics.

C. Millar, S. Subramanian, D. Lambert, 2008, Trends in ecology & evolution.

Rapid molecular evolution in a living fossil.

C. Millar, S. Subramanian, D. Lambert, 2008, Trends in genetics : TIG.

Selective Constraints Determine the Time Dependency of Molecular Rates for Human Nuclear Genomes

S. Subramanian, D. Lambert, 2012, Genome biology and evolution.

Ancient Population Genomics

S. Subramanian, Sankar Subramanian, 2018 .

VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SNPs

Sankar Subramanian, David Chen, Umayal Ramasamy, 2019, PeerJ.

Evidence for a recent origin of penguins

C. Millar, S. Subramanian, D. Lambert, 2013, Biology Letters.

Molecular evolution Evidence for a recent origin of penguins

C. Millar, S. Subramanian, D. Lambert, 2013 .

Next generation sequencing and analysis of a conserved transcriptome of New Zealand's kiwi

C. Millar, S. Subramanian, D. Lambert, 2010, BMC Evolutionary Biology.

Population size influences the type of nucleotide variations in humans

S. Subramanian, Sankar Subramanian, 2019, BMC Genetics.

Population size determines the type of nucleotide variations in humans

S. Subramanian, Sankar Subramanian, 2017, bioRxiv.

Ancient population genomics and the study of evolution

C. Millar, S. Subramanian, D. Lambert, 2015, Philosophical Transactions of the Royal Society B: Biological Sciences.

Time Dependency of Molecular Evolutionary Rates? Yes and No

David M. Lambert, S. Subramanian, D. Lambert, 2011, Genome biology and evolution.

Temporal trails of natural selection in human mitogenomes.

S. Subramanian, Sankar Subramanian, 2009, Molecular biology and evolution.

NMOSD and MS prevalence in the Indigenous populations of Australia and New Zealand

S. Broadley, A. Kermode, S. Subramanian, 2021, Journal of Neurology.

High mitogenomic evolutionary rates and time dependency.

C. Millar, S. Subramanian, T. Heupink, 2009, Trends in genetics : TIG.

Fixation of deleterious mutations at critical positions in human proteins.

S. Subramanian, 2011, Molecular biology and evolution.

Higher intensity of purifying selection on >90% of the human genes revealed by the intrinsic replacement mutation rates.

Sudhir Kumar, S. Subramanian, 2006, Molecular biology and evolution.

Using the plurality of codon positions to identify deleterious variants in human exomes

Sankar Subramanian, S. Subramanian, 2015, Bioinform..

Influence of Effective Population Size on Genes under Varying Levels of Selection Pressure

S. Subramanian, 2018, Genome biology and evolution.

The effects of sample size on population genomic analyses – implications for the tests of neutrality

S. Subramanian, 2016, BMC Genomics.

Second generation DNA sequencing of the mitogenome of the Chinstrap penguin and comparative genomics of Antarctic penguins

S. Subramanian, D. Lambert, L. Huynen, 2014, Mitochondrial DNA.

The Abundance of Deleterious Polymorphisms in Humans

S. Subramanian, 2012, Genetics.

Effect of genetic drift on determinants of protein evolution

S. Subramanian, Sankar Subramanian, 2018, Biology Letters.

The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: Correction

Nan Yu, Nan Lin, Jamie J. Cannone, 2002, BMC Bioinformatics.

The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

Nan Yu, Nan Lin, Jamie J. Cannone, 2002, BMC Bioinformatics.

Europeans have a higher proportion of high-frequency deleterious variants than Africans

S. Subramanian, Sankar Subramanian, 2015, Human Genetics.

Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes.

Sudhir Kumar, S. Subramanian, Sudhir Kumar, 2003, Genome research.

Abundance of clinical variants in exons included in multiple transcripts

S. Subramanian, 2018, Human Genomics.

Distance-dependent patterns of molecular divergences in tuatara mitogenomes

C. Millar, S. Subramanian, D. Lambert, 2015, Scientific Reports.

Significance of Population Size on the Fixation of Nonsynonymous Mutations in Genes Under Varying Levels of Selection Pressure

S. Subramanian, 2013, Genetics.

Temporal distribution of deleterious variations influences the estimation of FST

S. Subramanian, 2019, bioRxiv.

Europeans have a higher proportion of high-frequency deleterious variants than Africans

S. Subramanian, 2015, Human Genetics.

Adélie penguins and temperature changes in Antarctica: a long-term view.

C. Millar, S. Subramanian, T. Heupink, 2012, Integrative zoology.

Deleterious protein-coding variants in diverse cattle breeds of the world

S. Subramanian, Sankar Subramanian, 2021, Genetics Selection Evolution.

Genomic Prediction for Whole Weight, Body Shape, Meat Yield, and Color Traits in the Portuguese Oyster Crassostrea angulata

R. Tearle, C. Gondro, S. Subramanian, 2021, Frontiers in Genetics.

Molecular and morphological evolution in tuatara are decoupled

C. Millar, S. Subramanian, D. Lambert, 2009 .

Complete mitochondrial genomes of Tuatara endemic to different islands of New Zealand

C. Millar, S. Subramanian, D. Lambert, 2015, Mitochondrial DNA.

Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment

Chris M Rands, C. Ponting, Huanming Yang, 2014, GigaScience.

Quantifying harmful mutations in human populations

S. Subramanian, 2012, European Journal of Human Genetics.

Deleterious mutation load in the admixed mice population

S. Subramanian, A. Elizur, Umayal Ramasamy, 2023, Frontiers in Ecology and Evolution.

High proportions of deleterious polymorphisms in constrained human genes.

S. Subramanian, Sankar Subramanian, 2011, Molecular biology and evolution.

Genomic footprints of bottleneck in landlocked salmon population

S. Subramanian, Manoharan Kumar, 2022, bioRxiv.

Genomic signatures of bottleneck and founder effects in dingoes

S. Subramanian, G. Conroy, S. Ogbourne, 2023, bioRxiv.

Signatures of ecological resource availability in the animal and plant proteomes.

J. Elser, W. Fagan, Sudhir Kumar, 2006, Molecular biology and evolution.

Evolution of Nucleotide Composition in the SARS-CoV-2 Lineage: Implications for Vaccine Design

S. Subramanian, 2020 .