J. Bollback

发表

Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology

Jonathan P. Bollback, J. Huelsenbeck, F. Ronquist, 2001, Science.

Parallel Genetic Evolution Within and Between Bacteriophage Species of Varying Degrees of Divergence

Jonathan P. Bollback, J. Huelsenbeck, J. Bollback, 2009, Genetics.

Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA.

Jonathan P. Bollback, J. Bollback, Eva Freyhult, 2006, Genome research.

Stochastic mapping of morphological characters.

Jonathan P. Bollback, J. Huelsenbeck, R. Nielsen, 2003, Systematic biology.

The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing

Jonathan P. Bollback, R. Nielsen, J. Bollback, 2007, PloS one.

Bayesian model adequacy and choice in phylogenetics.

Jonathan P. Bollback, J. Bollback, 2002, Molecular biology and evolution.

Empirical and hierarchical Bayesian estimation of ancestral states.

Jonathan P. Bollback, J. Huelsenbeck, J. Bollback, 2001, Systematic biology.

Probabilistic models for CRISPR spacer content evolution

Jonathan P. Bollback, J. Bollback, A. Kupczok, 2013, BMC Evolutionary Biology.

Genes under positive selection in Escherichia coli.

Matthew W. Dimmic, Jonathan P. Bollback, J. Bollback, 2007, Genome research.

Evolutionary Genomics of Staphylococcus aureus Reveals Insights into the Origin and Molecular Basis of Ruminant Host Adaptation

Jason Hinds, Andrew Rambaut, Katherine A. Gould, 2010, Genome biology and evolution.

Evolutionary potential of transcription factors for gene regulatory rewiring

G. Tkačik, J. Bollback, C. Guet, 2018, Nature Ecology & Evolution.

Phylogeny, Genome Evolution, and Host Specificity of Single-Stranded RNA Bacteriophage (Family Leviviridae)

John P. Huelsenbeck, Jonathan P. Bollback, J. Huelsenbeck, 2001, Journal of Molecular Evolution.

Estimating the history of mutations on a phylogeny

Jonathan P. Bollback, R. Nielsen, J. Bollback, 2007 .

performance of homology search methods on noncoding RNA Exploring genomic dark matter: A critical assessment of the

Jonathan P. Bollback, J. Bollback, Eva Freyhult, 2010 .

Evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family

Jonathan P. Bollback, H. P. de Vladar, J. Bollback, 2015, Journal of The Royal Society Interface.

Epistatic Interactions in the Arabinose Cis-Regulatory Element

J. Bollback, C. Guet, Claudia Igler, 2015, Molecular biology and evolution.

Evolutionary barriers to horizontal gene transfer in macrophage-associated Salmonella

Jonathan P. Bollback, Cecil M. Lewis, K. Sankaranarayanan, 2022, bioRxiv.

Transcriptomic profiling of Escherichia coli K-12 in response to a compendium of stressors

Jonathan P. Bollback, J. Bollback, A. Predeus, 2022, Scientific Reports.

Inferring the root of a phylogenetic tree.

Jonathan P. Bollback, J. Huelsenbeck, J. Bollback, 2002, Systematic biology.

The Role of the Environment in Horizontal Gene Transfer

Jonathan P. Bollback, J. Bollback, M. Lagator, 2022, Molecular biology and evolution.

Regulatory network structure determines patterns of intermolecular epistasis

J. Bollback, C. Guet, Hande Acar, 2017, eLife.

Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza

Jonathan P. Bollback, A. Leigh Brown, J. Bollback, 2013, BMC Evolutionary Biology.

Ancient DNA extracted from Danish aurochs (Bos primigenius): genetic diversity and preservation.

M. Meyer, M. Hofreiter, J. Bollback, 2012, Annals of anatomy = Anatomischer Anzeiger : official organ of the Anatomische Gesellschaft.

Environment and the Evolutionary Trajectory of Horizontal Gene Transfer

Jonathan P. Bollback, J. Bollback, R. Bhatia, 2022, Access Microbiology.

Evolutionary interplay between structure, energy and epistasis in the coat protein of the $\phi \chi 174$ phage family

H. P. D. Vladar, J. Bollback, Tomasz Włodarski, 2015 .

SIMMAP: Stochastic character mapping of discrete traits on phylogenies

Jonathan P. Bollback, J. Bollback, 2006, BMC Bioinformatics.

Posterior Mapping and Posterior Predictive Distributions

Jonathan P. Bollback, J. Bollback, 2005 .

Experimental determination of evolutionary barriers to horizontal gene transfer

Jonathan P. Bollback, J. Bollback, M. Lagator, 2019, bioRxiv.

On the mechanistic nature of epistasis in a canonical cis-regulatory element

Călin C Guet, Tiago Paixão, Jonathan P. Bollback, 2017, eLife.

True and false gharials: a nuclear gene phylogeny of crocodylia.

Jonathan P. Bollback, M. Braun, T. Parsons, 2003, Systematic biology.

BEHAVIORAL PATERNITY PREDICTS GENETIC PATERNITY IN SATIN BOWERBIRDS (PTILONORHYNCHUS VIOLACEUS), A SPECIES WITH A NON-RESOURCE-BASED MATING SYSTEM

Jonathan P. Bollback, M. Braun, G. Patricelli, 2007 .

Population structure of the malaria vector Anopheles darlingi in a malaria-endemic region of eastern Amazonian Brazil.

Jonathan P. Bollback, J. Vineis, J. Bollback, 2006, The American journal of tropical medicine and hygiene.

Isolation of polymorphic microsatellite markers from the malaria vector Anopheles darlingi

J. Bollback, R. Wilkerson, M. Póvoa, 2001 .

Predicting bacterial promoter function and evolution from random sequences

Jonathan P. Bollback, G. Tkačik, J. Bollback, 2022, eLife.

Structure and Evolution of Constitutive Bacterial Promoters

Jonathan P. Bollback, G. Tkačik, J. Bollback, 2020, bioRxiv.

Gene amplification as a form of population-level gene expression regulation

Jonathan P. Bollback, G. Tkačik, J. Bollback, 2020, Nature Ecology & Evolution.

Estimation of 2Nes From Temporal Allele Frequency Data

Jonathan P. Bollback, Thomas L York, R. Nielsen, 2008, Genetics.

Clonal interference is alleviated by high mutation rates in large populations.

Jonathan P. Bollback, J. Huelsenbeck, J. Bollback, 2007, Molecular biology and evolution.

Fitness effects of beneficial mutations: the mutational landscape model in experimental evolution.

Jonathan P. Bollback, J. Bollback, A. Betancourt, 2006, Current opinion in genetics & development.

On the Mechanistic Nature of Epistasis in a Canonical 1 cis-Regulatory Element 2 3

N. Barton, J. Bollback, Tiago Paixão, 2017 .

Gene amplification as a form of population-level gene expression regulation

G. Tkačik, J. Bollback, C. Guet, 2020, Nature Ecology & Evolution.

CRISPR-based herd immunity can limit phage epidemics in bacterial populations

Jonathan P. Bollback, N. Barton, J. Bollback, 2018, eLife.

CRISPR-based Herd Immunity Limits Phage Epidemics in Bacterial Populations

N. Barton, J. Bollback, Lukas Geyrhofer, 2017 .

Application of the Likelihood Function in Phylogenetic Analysis

John P. Huelsenbeck, Jonathan P. Bollback, J. Huelsenbeck, 2004 .

Escherichia coli Genes under positive selection in Material Supplemental

Matthew W. Dimmic, Jonathan P. Bollback, J. Bollback, 2007 .

Complete Genome Sequence of the Novel Phage MG-B1 Infecting Bacillus weihenstephanensis

J. Bollback, A. Kupczok, R. Redondo, 2013, Genome Announcements.