A. Drummond

发表

Mapping the Origins and Expansion of the Indo-European Language Family

Simon J. Greenhill, M. Suchard, R. Gray, 2012, Science.

Language Phylogenies Reveal Expansion Pulses and Pauses in Pacific Settlement

Simon J. Greenhill, R. Gray, A. Drummond, 2009, Science.

Epidemic dynamics revealed in dengue evolution.

Durrell D. Kapan, M. Suchard, O. Pybus, 2010, Molecular biology and evolution.

Bayesian coalescent inference of past population dynamics from molecular sequences.

O. Pybus, A. Rambaut, A. Drummond, 2005, Molecular biology and evolution.

The Molecular Population Genetics of HIV-1 Group O

P. Lemey, O. Pybus, A. Rambaut, 2004, Genetics.

BEAST: Bayesian evolutionary analysis by sampling trees

A. Rambaut, A. Drummond, 2007, BMC Evolutionary Biology.

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

M. Suchard, A. Rambaut, A. Drummond, 2012, Molecular biology and evolution.

Bayesian Inference of Species Trees from Multilocus Data

A. Drummond, Joseph Heled, 2009, Molecular biology and evolution.

Relaxed Phylogenetics and Dating with Confidence

S. Ho, A. Rambaut, A. Drummond, 2006, PLoS biology.

Estimating the basic reproductive number from viral sequence data.

Beda Joos, Tanja Stadler, Sebastian Bonhoeffer, 2012, Molecular biology and evolution.

The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography

A. Drummond, E. Willerslev, B. Shapiro, 2009, Proceedings of the National Academy of Sciences.

DRAFT - Bayesian Evolutionary Analysis with BEAST 2

R. Bouckaert, A. Drummond, 2015 .

The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes

A. Drummond, T. Heath, T. Stadler, 2017, Journal of theoretical biology.

Bayesian random local clocks, or one rate to rule them all

M. Suchard, A. Drummond, 2010, BMC Biology.

StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates

Huw A. Ogilvie, R. Bouckaert, A. Drummond, 2016, bioRxiv.

Rates of Evolution in Ancient DNA from Adélie Penguins

C. Millar, B. Holland, A. Drummond, 2002, Science.

Inference of viral evolutionary rates from molecular sequences.

O. Pybus, A. Rambaut, A. Drummond, 2003, Advances in parasitology.

Birth–death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)

S. Bonhoeffer, A. Drummond, T. Stadler, 2012, Proceedings of the National Academy of Sciences.

Evolution of the Human Immunodeficiency Virus Envelope Gene Is Dominated by Purifying Selection

Daniel J. Wilson, O. Pybus, E. Holmes, 2006, Genetics.

Inferring Ancestral Recombination Graphs from Bacterial Genomic Data

A. Drummond, T. Vaughan, N. French, 2016, Genetics.

Bayesian inference of population size history from multiple loci

A. Drummond, Joseph Heled, 2008, BMC Evolutionary Biology.

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics.

Wai Lok Sibon Li, M. Suchard, P. Lemey, 2012, Molecular biology and evolution.

bModelTest: Bayesian phylogenetic site model averaging and model comparison

R. Bouckaert, A. Drummond, 2015, BMC Evolutionary Biology.

Evaluating a multigene environmental DNA approach for biodiversity assessment

A. Drummond, Dong Xie, Joseph Heled, 2015, GigaScience.

Time dependency of molecular rate estimates and systematic overestimation of recent divergence times.

Alexei J Drummond, Alan Cooper, Simon Y W Ho, 2005, Molecular biology and evolution.

Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences.

Alexei J Drummond, Andrew Rambaut, A. Rambaut, 2006, Molecular biology and evolution.

Approximate Bayesian computation of transcriptional pausing mechanisms

A. Drummond, R. Kingston, J. Douglas, 2019, bioRxiv.

Guided tree topology proposals for Bayesian phylogenetic inference.

Alexei J Drummond, Sebastian Höhna, A. Drummond, 2012, Systematic biology.

Improving the performance of Bayesian phylogenetic inference under relaxed clock models

A. Drummond, Rong Zhang, 2020, BMC Evolutionary Biology.

Computational Performance and Statistical Accuracy of *BEAST and Comparisons with Other Methods

Huw A. Ogilvie, Alexei J. Drummond, Dong Xie, 2015, Systematic biology.

Model Averaging and Bayes Factor Calculation of Relaxed Molecular Clocks in Bayesian Phylogenetics

Wai Lok Sibon Li, A. Drummond, 2011, Molecular biology and evolution.

Genealogies from Time-Stamped Sequence Data

G. Nicholls, A. Rodrigo, W. Solomon, 2004 .

Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth–death SIR model

Tanja Stadler, Alexei J. Drummond, Denise Kühnert, 2013, Journal of The Royal Society Interface.

Estimating Epidemic Incidence and Prevalence from Genomic Data

David A. Rasmussen, A. Drummond, T. Vaughan, 2018, bioRxiv.

Bayesian inference of ancestral recombination graphs for bacterial populations

A. Drummond, T. Vaughan, N. French, 2016, bioRxiv.

Phylodynamic Model Adequacy Using Posterior Predictive Simulations

R. Bouckaert, A. Drummond, T. Stadler, 2018, bioRxiv.

Calibrated Tree Priors for Relaxed Phylogenetics and Divergence Time Estimation

Alexei J. Drummond, Joseph Heled, A. Drummond, 2011, Systematic biology.

Bayesian phylogenetic estimation of fossil ages

A. Drummond, T. Stadler, 2016, Philosophical Transactions of the Royal Society B: Biological Sciences.

Recursive algorithms for phylogenetic tree

A. Drummond, D. Welch, 2013 .

Evidence of the Recombinant Origin of a Bat Severe Acute Respiratory Syndrome (SARS)-Like Coronavirus and Its Implications on the Direct Ancestor of SARS Coronavirus

C. Hon, F. C. Leung, Zhènglì Shí, 2007, Journal of Virology.

The power and limitations of genomics to track COVID-19 outbreaks: a case study from New Zealand

Colin Simpson, E. Holmes, A. Sporle, 2020 .

Simulating gene trees under the multispecies coalescent and time-dependent migration

David Bryant, Alexei J Drummond, Joseph Heled, 2013, BMC Evolutionary Biology.

Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration

Nicola F. Müller, R. Bouckaert, A. Drummond, 2019, PLoS computational biology.

Accounting for errors in data improves timing in single-cell cancer evolution

A. Drummond, D. Welch, Kylie Chen, 2022, bioRxiv.

How well can the exponential-growth coalescent approximate constant-rate birth–death population dynamics?

S. Guindon, A. Drummond, T. Vaughan, 2015, Proceedings of the Royal Society B: Biological Sciences.

Genomic epidemiology of circulating SARS-CoV-2 variants during first two years of the pandemic in Colombia

R. Bouckaert, K. Atkins, A. Drummond, 2022, medRxiv.

Phylodynamics reveals the role of human travel and contact tracing in controlling COVID-19 in four island nations

Colin Simpson, R. Bouckaert, A. Drummond, 2020, medRxiv.

Report of the 14th Genomic Standards Consortium Meeting, Oxford, UK, September 17-21, 2012.

Sarah J. Bourlat, F. Glöckner, N. Morrison, 2014, Standards in Genomic Sciences.

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

M. Suchard, A. Rambaut, A. Drummond, 2018, Systematic biology.

Joint inference of microsatellite mutation models, population history and genealogies using trans-dimensional MCMC

Chieh-Tsai Wu, A. Drummond, 2011 .

Evolutionary history of cotranscriptional editing in the paramyxoviral phosphoprotein gene

A. Drummond, R. Kingston, J. Douglas, 2020, bioRxiv.

For consideration as a Research Article

M. Suchard, S. Ho, A. Rambaut, 2010 .

Evidences of the Recombinant Origin of a Bat SARS-like Coronavirus and its 2 Implications on the Direct Ancestor of SARS Coronavirus 3 4 Running title: 5

C. Hon, F. C. Leung, A. Drummond, 2007 .

Extreme reversed sexual size dimorphism in the extinct New Zealand moa Dinornis

W. Hoppitt, A. Drummond, E. Willerslev, 2003, Nature.

LinguaPhylo: a probabilistic model specification language for reproducible phylogenetic analyses

A. Drummond, F. K. Mendes, Dong Xie, 2022, bioRxiv.

Posterior summarisation in Bayesian phylogenetics using Tracer

M. Suchard, A. Rambaut, A. Drummond, 2022 .

Bayesian Coalescent Epidemic Inference: Comparison of Stochastic and Deterministic SIR Population Dynamics

A. Drummond, T. Vaughan, T. Stadler, 2014 .

TreeFlow: probabilistic programming and automatic differentiation for phylogenetics

M. Suchard, A. Drummond, IV FrederickAMatsen, 2022, 2211.05220.

Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration

Tanja Stadler, David Welch, Alexandra Gavryushkina, 2014, PLoS Comput. Biol..

bModelTest: Bayesian phylogenetic site model averaging and model comparison

R. Bouckaert, A. Drummond, 2016, bioRxiv.

Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins

Tanja Stadler, David Welch, Alexandra Gavryushkina, 2015, Systematic biology.

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

Dong Xie, Remco R. Bouckaert, Alexei J. Drummond, 2014, PLoS Comput. Biol..

Bayesian coalescent inference of major human mitochondrial DNA haplogroup expansions in Africa

R. Gray, Q. Atkinson, A. Drummond, 2009, Proceedings of the Royal Society B: Biological Sciences.

Rise and Fall of the Beringian Steppe Bison

Beth Shapiro, Alexei J. Drummond, Andrew Rambaut, 2004, Science.

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

Shane S. Sturrock, Alexei J. Drummond, Chris Duran, 2012, Bioinform..

Divergence time estimates for major cephalopod groups: evidence from multiple genes

A. Drummond, A. Cooper, J. Strugnell, 2006, Cladistics : the international journal of the Willi Hennig Society.

A retrodictive stochastic simulation algorithm

Peter D. Drummond, Alexei J. Drummond, Timothy G. Vaughan, 2010, J. Comput. Phys..

Inferring Epidemiological Dynamics with Bayesian Coalescent Inference: The Merits of Deterministic and Stochastic Models

Tanja Stadler, Alexei J Drummond, Alex Popinga, 2014, Genetics.

Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand

Colin Simpson, E. Holmes, A. Sporle, 2020, Nature Communications.

Bayesian inference and comparison of stochastic transcription elongation models

Jordan Douglas, Richard Kingston, Alexei J Drummond, 2020, PLoS Comput. Biol..

Bayesian inference and comparison of stochastic transcription elongation models

Jordan Douglas, Alexei J. Drummond, Richard L. Kingston, 2018, bioRxiv.

Explorer BEAST : Bayesian evolutionary analysis by sampling trees

A. Rambaut, A. Drummond, 2017 .

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

Sebastián Duchêne, Graham Jones, Igor Siveroni, 2018, bioRxiv.

Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10

Daniel L. Ayres, Guy Baele, Marc A Suchard, 2018, Virus evolution.

Phylogenetic Analysis Reveals a Correlation between the Expansion of Very Virulent Infectious Bursal Disease Virus and Reassortment of Its Genome Segment B

C. Hon, F. C. Leung, A. Rambaut, 2006, Journal of Virology.

Phylogenetic and epidemic modeling of rapidly evolving infectious diseases

Alexei J. Drummond, Denise Kühnert, Chieh-Hsi Wu, 2011, Infection, Genetics and Evolution.

Influenza A Virus Migration and Persistence in North American Wild Birds

Timothy B. Stockwell, Gavin J. D. Smith, T. Stockwell, 2013, PLoS pathogens.

Bayesian Evolutionary Analysis with BEAST

Remco R. Bouckaert, Alexei J. Drummond, R. Bouckaert, 2015 .

Bayesian Phylogeography Finds Its Roots

Alexei J. Drummond, Marc A. Suchard, Andrew Rambaut, 2009, PLoS Comput. Biol..

The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: a Bayesian coalescent approach.

O. Pybus, A. Rambaut, A. Drummond, 2003, Molecular biology and evolution.

A Bayesian phylogenetic method to estimate unknown sequence ages.

Marc A Suchard, Alexei J Drummond, Andrew Rambaut, 2011, Molecular biology and evolution.

Post-mortem DNA damage hotspots in Bison (Bison bison) provide evidence for both damage and mutational hotspots in human mitochondrial DNA

A. Drummond, M. Gilbert, B. Shapiro, 2005 .

Ancient DNA: Would the Real Neandertal Please Stand up?

A. Drummond, E. Willerslev, A. Cooper, 2004, Current Biology.

Fast Bayesian inference of phylogenies from multiple continuous characters

Alexei J. Drummond, Fábio K. Mendes, Rong Zhang, 2021, bioRxiv.

Accommodating the effect of ancient DNA damage on inferences of demographic histories.

S. Ho, A. Rambaut, A. Drummond, 2009, Molecular biology and evolution.

mtDNA variation predicts population size in humans and reveals a major Southern Asian chapter in human prehistory.

Alexei J Drummond, Quentin D Atkinson, Russell D Gray, 2008, Molecular biology and evolution.

Evidence for time dependency of molecular rate estimates.

S. Ho, A. Drummond, B. Shapiro, 2007, Systematic biology.

Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data.

Alexei J Drummond, Wiremu Solomon, Allen G Rodrigo, 2002, Genetics.

Measurably evolving populations

A. Rodrigo, O. Pybus, R. Forsberg, 2003 .

Bayesian Inference of Species Networks from Multilocus Sequence Data

Tanja Stadler, Huw A. Ogilvie, Alexei J Drummond, 2017, bioRxiv.

Explorer Bayesian Phylogeography Finds Its Roots

M. Suchard, P. Lemey, A. Rambaut, 2017 .

Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data

Tanja Stadler, Alexei J. Drummond, Denise Kühnert, 2016, Molecular biology and evolution.

Accuracy of rate estimation using relaxed-clock models with a critical focus on the early metazoan radiation.

S. Ho, A. Drummond, A. Cooper, 2005, Molecular biology and evolution.

Bayesian coestimation of phylogeny and sequence alignment

István Miklós, Jotun Hein, Alexei J. Drummond, 2005, BMC Bioinformatics.

Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model

István Miklós, Jotun Hein, Alexei J. Drummond, 2003, WABI.

Reconstructing genealogies of serial samples under the assumption of a molecular clock using serial-sample UPGMA.

A. Rodrigo, A. Drummond, A Drummond, 2000, Molecular biology and evolution.

The Phylogenetic Handbook: Bayesian evolutionary analysis by sampling trees

Alexei J. Drummond, Andrew Rambaut, A. Rambaut, 2009 .

Tree measures and the number of segregating sites in time-structured population samples

J. Hein, R. Forsberg, A. Drummond, 2005, BMC Genetics.

EVOLUTION OF THE HIV-1 ENVELOPE GENE IS DOMINATED BY PURIFYING SELECTION

O. Pybus, E. Holmes, R. Phillips, 2006 .

Manuscript Type: Letter

S. Ho, A. Rambaut, A. Drummond, 2008 .

Fully Bayesian tests of neutrality using genealogical summary statistics

Marc A Suchard, Alexei J Drummond, M. Suchard, 2008, BMC Genetics.

Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1

Daniel J. Wilson, Alexei J Drummond, Daniel J Wilson, 2006, BMC Evolutionary Biology.

A Virus Reveals Population Structure and Recent Demographic History of Its Carnivore Host

A. Drummond, M. Poss, R. Biek, 2006, Science.

Epidemiology, Genetic Diversity, and Evolution of Endemic Feline Immunodeficiency Virus in a Population of Wild Cougars

A. Rodrigo, A. Drummond, M. Poss, 2003, Journal of Virology.

PAL: an object-oriented programming library for molecular evolution and phylogenetics

Korbinian Strimmer, Alexei J. Drummond, K. Strimmer, 2001, Bioinform..

Neotenous origins for pelagic octopuses

M. Norman, A. Drummond, A. Cooper, 2004, Current Biology.

Novel Integrative Modeling of Molecules and Morphology across Evolutionary Timescales

Huw A. Ogilvie, A. Drummond, T. Vaughan, 2021, Systematic biology.

Inferring Species Trees Using Integrative Models of Species Evolution

Tanja Stadler, Huw A. Ogilvie, Alexei J. Drummond, 2018, bioRxiv.

Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution.

Alexei J Drummond, Robert P Freckleton, Andrew Rambaut, 2007, Molecular biology and evolution.

The Evolutionary Genetics of Viral Emergence

E. Holmes, A. Drummond, Alexei J. Drummond, 2007, Current topics in microbiology and immunology.

Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics

Sergei L. Kosakovsky Pond, Beth Shapiro, Alexei J. Drummond, 2007, PLoS Comput. Biol..

The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates

Guy Baele, Anne-Mieke Vandamme, Alexei J. Drummond, 2014, PLoS Comput. Biol..

Inferring host roles in bayesian phylodynamics of global avian influenza A virus H9N2.

A. Drummond, Bing Xu, Dong Xie, 2019, Virology.

Bayesian phylodynamics of avian influenza virus H9N2 in Asia with time-dependent predictors of migration

Remco R. Bouckaert, Alexei J. Drummond, Nicola F. Müller, 2018, PLoS Comput. Biol..

Estimating the biodiversity of terrestrial invertebrates on a forested island using DNA barcodes and metabarcoding data.

A. Drummond, Dong Xie, R. Newcomb, 2019, Ecological applications : a publication of the Ecological Society of America.

Impacts of DNA extraction and PCR on DNA metabarcoding estimates of soil biodiversity

A. Drummond, Dong Xie, R. Newcomb, 2018, Methods in Ecology and Evolution.

Clock-constrained tree proposal operators in Bayesian phylogenetic inference

Michael Defoin-Platel, Alexei J. Drummond, Sebastian Höhna, 2008, 2008 8th IEEE International Conference on BioInformatics and BioEngineering.

The inference of stepwise changes in substitution rates using serial sequence samples.

A. Rodrigo, R. Forsberg, A. Drummond, 2001, Molecular biology and evolution.

Bayesian Selection of Nucleotide Substitution Models and Their Site Assignments

Alexei J. Drummond, Marc A. Suchard, M. Suchard, 2012, Molecular biology and evolution.

Efficient Bayesian inference under the structured coalescent

David Welch, Alexei J. Drummond, Denise Kühnert, 2014, Bioinform..

Inferring evolutionary rates using serially sampled sequences from several populations.

A. Rodrigo, R. Forsberg, A. Drummond, 2003, Molecular biology and evolution.

Computational statistical inference for molecular evolution and population genetics.

Alexei J. Drummond, A. Drummond, 2002 .

Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand

Colin Simpson, E. Holmes, A. Sporle, 2021, Emerging infectious diseases.

Taming the BEAST—A Community Teaching Material Resource for BEAST 2

David A. Rasmussen, Nicola F. Müller, O. Pybus, 2017, Systematic Biology.

MBE methodology became available allowing for sequences being sampled sequentially through time ( Rambaut 2000 ) , allowing for changing population sizes through time (

H. Günthard, S. Yerly, T. Klimkait, 2018 .

Estimating Epidemic Incidence and Prevalence from Genomic Data

Tanja Stadler, David Welch, Alexei J. Drummond, 2017, bioRxiv.

Recursive algorithms for phylogenetic tree counting

David Welch, Alexandra Gavryushkina, Alexei J. Drummond, 2013, Algorithms for Molecular Biology.

A Stochastic Simulator of Birth–Death Master Equations with Application to Phylodynamics

Alexei J. Drummond, Timothy G. Vaughan, A. Drummond, 2013, Molecular biology and evolution.

Joint Inference of Microsatellite Mutation Models, Population History and Genealogies Using Transdimensional Markov Chain Monte Carlo

Chieh-Hsi Wu, A. Drummond, 2011, Genetics.

Extinction in a self-regulating population with demographic and environmental noise

A. Drummond, P. Drummond, 2008, 0807.4772.

Posterior analysis and post-processing

R. Bouckaert, A. Drummond, 2015 .

Field validation of phylodynamic analytical methods for inference on epidemiological processes in wildlife

A. Drummond, T. Vaughan, D. Ramsey, 2020 .

Genomic Evidence of In-Flight Transmission of SARS-CoV-2 Despite Predeparture Testing

Colin Simpson, E. Holmes, A. Sporle, 2021, Emerging Infectious Diseases.

Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nations

Colin Simpson, R. Bouckaert, A. Drummond, 2021, Virus evolution.

Joint inference of species histories and gene flow

Huw A. Ogilvie, Nicola F. Müller, A. Drummond, 2018 .

Statistical Alignment: Recent Progress, New Applications, and Challenges

István Miklós, Alexei J. Drummond, Gerton Lunter, 2005 .

SANTA-SIM: simulating viral sequence evolution dynamics under selection and recombination

Kristof Theys, Alexei J Drummond, Andrew Rambaut, 2018, bioRxiv.

The founding charter of the Genomic Observatories Network

Renzo Kottmann, Frank Oliver Glöckner, Norman Morrison, 2014, GigaScience.

Accounting for errors in data improves timing in single-cell cancer evolution

A. Drummond, D. Welch, Kylie Chen, 2022, bioRxiv.

How Accurate and Robust Are the Phylogenetic Estimates of Austronesian Language Relationships?

Simon J. Greenhill, Russell D. Gray, Alexei J. Drummond, 2010, PloS one.

Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) using a multigene approach; the effect of data partitioning on resolving phylogenies in a Bayesian framework.

M. Norman, A. Drummond, A. Cooper, 2005, Molecular phylogenetics and evolution.

BEAST2: Bayesian evolutionary analysis sampling trees

Remco R. Bouckaert, Alexei J. Drummond, Marc A. Suchard, 2014 .

LinguaPhylo: A probabilistic model specification language for reproducible phylogenetic analyses

A. Drummond, F. K. Mendes, Dong Xie, 2023, bioRxiv.

Inference of species histories in the presence of gene flow

Tanja Stadler, Huw A. Ogilvie, Alexei J. Drummond, 2018, bioRxiv.

Within-host demographic fluctuations and correlations in early retroviral infection.

A. Drummond, P. Drummond, T. Vaughan, 2012, Journal of theoretical biology.

Genomic epidemiology of SARS-CoV-2 variants during the first two years of the pandemic in Colombia

R. Bouckaert, K. Atkins, A. Drummond, 2023, Communications medicine.

The space of ultrametric phylogenetic trees.

Alexei J Drummond, Alex Gavryushkin, A. Drummond, 2014, Journal of theoretical biology.

Supporting Online Material Materials and Methods Fig. S1 Tables S1 and S2 References Database S1 Disrupting the Pairing between Let-7 and Hmga2 Enhances Oncogenic Transformation

David P. Bartel, G. C. Johns, Christine Mayr, 2022 .

Software for Systematics and Evolution

R. Bouckaert, A. Drummond, T. Stadler, 2019 .

Taming the BEAST—A Community Teaching Material Resource for BEAST 2

David A. Rasmussen, Nicola F. Müller, O. Pybus, 2017, Systematic biology.

Calibrated Birth–Death Phylogenetic Time-Tree Priors for Bayesian Inference

Alexei J. Drummond, Joseph Heled, A. Drummond, 2013, Systematic biology.

Simulation model of prebiotic evolution of genetic coding

Kay Nieselt, Sidney Markowitz, D. Drummond, 2006 .

Improving the performance of Bayesian phylogenetic inference under relaxed clock models

A. Drummond, Rong Zhang, 2020, BMC Evolutionary Biology.

BEAST: Bayesian evolutionary analysis by sampling trees

A. Rambaut, A. Drummond, 2007, BMC Evolutionary Biology.

phylogenetics with

M. Suchard, A. Rambaut, A. Drummond, 2012 .

Accommodating the effect of ancient DNA damage on inferences of demographic histories.

S. Ho, A. Rambaut, A. Drummond, 2009, Molecular biology and evolution.

Tree measures and the number of segregating sites in time-structured population samples

J. Hein, R. Forsberg, A. Drummond, 2005, BMC Genetics.

Bayesian coestimation of phylogeny and sequence alignment

J. L. Jensen, J. Hein, I. Miklós, 2005, BMC Bioinformatics.

Epidemiology, Genetic Diversity, and Evolution of Endemic Feline Immunodeficiency Virus in a Population of Wild Cougars

A. Rodrigo, A. Drummond, M. Poss, 2003, Journal of Virology.

Evaluation of proposal distributions on clock-constrained trees in Bayesian phylogenetic inference

A. Drummond, Sebastian Hoehna, 2008 .

The multispecies coalescent ( MSC ) reconstructs species trees from a set of genes , and fully

Huw A. Ogilvie, A. Drummond, 2016 .

The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes

A. Drummond, T. Heath, T. Stadler, 2018, Journal of theoretical biology.

The fossilized birth-death model for the analysis of stratigraphic range data under different speciation concepts

A. Drummond, R. Warnock, Alexandra Gavryushkina, 2017, 1706.10106.

Fast Bayesian Inference of Phylogenies from Multiple Continuous Characters

A. Drummond, Fábio K. Mendes, Rong Zhang, 2023, Systematic biology.

A case study of extended in-flight transmission of SARS-CoV-2 en route to Aotearoa New Zealand

Colin Simpson, E. Holmes, A. Sporle, 2020 .