Yanda Li

发表

Kernel MSE algorithm: a unified framework for KFD, LS-SVM and KRR

Xuegong Zhang, Jianhua Xu, Yanda Li, 2001, IJCNN'01. International Joint Conference on Neural Networks. Proceedings (Cat. No.01CH37222).

Epistatic Module Detection for Case-Control Studies: A Bayesian Model with a Gibbs Sampling Strategy

R. Jiang, Xuebing Wu, Yanda Li, 2009, PLoS genetics.

Inferring pathway crosstalk networks using gene set co-expression signatures.

Yanda Li, Jin Gu, Ting Wang, 2013, Molecular bioSystems.

High-resolution human core-promoter prediction with CoreBoost_HM.

Michael Q. Zhang, Z. Xuan, Yanda Li, 2009, Genome research.

Multiscale Modeling of Inflammation-Induced Tumorigenesis Reveals Competing Oncogenic and Oncoprotective Roles for Inflammation.

Jinzhi Lei, Qing Nie, Yanda Li, 2017, Cancer research.

Identification of alternative 5′/3′ splice sites based on the mechanism of splice site competition

Yanda Li, Huiyu Xia, Jianning Bi, 2006, Nucleic acids research.

Integrating Multiple Genomic Data to Predict Disease-Causing Nonsynonymous Single Nucleotide Variants in Exome Sequencing Studies

Rui Jiang, Yanda Li, Jiaxin Wu, 2014, PLoS genetics.

SubChlo: predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic K-nearest neighbor (ET-KNN) algorithm.

Yanda Li, Pufeng Du, Pufeng Du, 2009, Journal of theoretical biology.

Prediction of C-to-U RNA editing sites in plant mitochondria using both biochemical and evolutionary information.

Yanda Li, Pufeng Du, Pufeng Du, 2008, Journal of theoretical biology.

Sparse training procedure for kernel neuron

Xuegong Zhang, Jianhua Xu, Yanda Li, 2003, International Conference on Neural Networks and Signal Processing, 2003. Proceedings of the 2003.

Large margin kernel pocket algorithm

Xuegong Zhang, Jianhua Xu, Yanda Li, 2001, IJCNN'01. International Joint Conference on Neural Networks. Proceedings (Cat. No.01CH37222).

CURE-Chloroplast: A chloroplast C-to-U RNA editing predictor for seed plants

Yanda Li, Liyan Jia, Pufeng Du, 2009, BMC Bioinformatics.

Integrated omics study delineates the dynamics of lipid droplets in Rhodococcus opacus PD630

Michael Q. Zhang, Xuegong Zhang, Jun Yu, 2013, Nucleic acids research.

A genome-wide survey of alternative translational initiation events in Homo sapiens

Yanda Li, Jing Zhang, Jun Cai, 2007, Science in China Series C: Life Sciences.

Exploring Codon Usage Patterns of Alternatively Spliced Genes in Human Chromosome 1

Yanda Li, Fei Ma, Yonglong Zhuang, 2004 .

The loss of heterochromatin is associated with multiscale three-dimensional genome reorganization and aberrant transcription during cellular senescence

Michael Q. Zhang, Yanda Li, Wei Xie, 2021, Genome research.

Dynamic transcriptome profiling in DNA damage-induced cellular senescence and transient cell-cycle arrest.

Yanda Li, Lei Wei, Liyang Liu, 2020, Genomics.

Investigation of the Mechanism of Alternative Promoters Influencing Alternative Splicing

Yanda Li, J. Bi, 2008, 2008 2nd International Conference on Bioinformatics and Biomedical Engineering.

Prediction of C-to-U RNA editing sites in higher plant mitochondria using only nucleotide sequence features.

Yanda Li, Pufeng Du, Pufeng Du, 2007, Biochemical and biophysical research communications.

Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit

Michael Q. Zhang, Yanda Li, Xiaowo Wang, 2015, Proceedings of the National Academy of Sciences.

Distribution of Mature MicroRNA on Its Precursor : A New Character for MicroRNA Prediction

Yanda Li, Huiyu Xia, Fei Li, 2006 .

Identifications of conserved 7-mers in 3'-UTRs and microRNAs in Drosophila

Hu Fu, Yanda Li, Jin Gu, 2007, BMC Bioinformatics.

Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine

Fei Li, Guo-Ping Liu, Tao He, 2005, BMC Bioinformatics.

MicroRNA identification based on sequence and structure alignment

Fei Li, Tao He, Yanda Li, 2005, Bioinform..

Primary transcripts and expressions of mammal intergenic microRNAs detected by mapping ESTs to their flanking sequences

Fei Li, Yanda Li, Jing Zhang, 2006, Mammalian Genome.

Evidence for association of multi-exon skipping events with tumors

Yanda Li, J. Bi, Tao Peng, 2008 .

Alteration of protein subcellular location and domain formation by alternative translational initiation

Yanda Li, Fei Li, Jun Cai, 2005, Proteins.

Prediction of protein subcellular locations using fuzzy k-NN method

Ying Huang, Yanda Li, Yanda Li, 2004, Bioinform..

The relationship among gene expression, folding free energy and codon usage bias in Escherichia coli

Yanda Li, Mengwen Jia, 2005, FEBS letters.

MIROR: a method for cell-type specific microRNA occupancy rate prediction.

Michael Q. Zhang, Yanda Li, Xiaowo Wang, 2014, Molecular bioSystems.

Computational identification of potential microRNA network biomarkers for the progression stages of gastric cancer

Le Lu, Yanda Li, Shao Li, 2011, Int. J. Data Min. Bioinform..

Open Access Research Article Identification of Responsive Gene Modules by Network-based Gene Clustering and Extending: Application to Inflammation and Angiogenesis

Yang Chen, Yanda Li, Jin Gu, 2022 .

Inferring the perturbed microRNA regulatory networks from gene expression data using a network propagation based method

Ting Wang, Yanda Li, Jin Gu, 2014, BMC Bioinformatics.

The impact of very short alternative splicing on protein structures and functions in the human genome.

Yanda Li, Huiyu Xia, Xuegong Zhang, 2004, Trends in genetics : TIG.

Usage Patterns of Codons Versus Complementary Codons Among Cellular Organisms and Organelles

Yanda Li, Xiaofeng Xu, Xue-ping Chen, 2003 .

Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical features of segmented sequence

Yanda Li, Pufeng Du, Pufeng Du, 2006, BMC Bioinformatics.

Complicated evolutionary patterns of microRNAs in vertebrates

Xuegong Zhang, Yanda Li, Xiaowo Wang, 2008, Science in China Series C: Life Sciences.

Identification of phylogenetically conserved microRNA cis-regulatory elements across 12 Drosophila species

Michael Q. Zhang, Yanda Li, Jin Gu, 2008, Bioinform..

ATID: a web-oriented database for collection of publicly available alternative translational initiation events

Jing Zhang, Jun Cai, Ying Huang, 2005, Bioinform..

Comparative analysis of amino acid usage and protein length distribution between alternatively and non-alternatively spliced genes across six eukaryotic genomes.

Yanda Li, Jesse Li-Ling, Yonglong Zhuang, 2003, Molecular biology and evolution.

Integrative Computational Identifications of the Signaling Pathway Network Related to TNF-alpha Stimulus in Vascular Endothelial Cells

Yang Chen, Yanda Li, Jin Gu, 2009, 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing.

Network-Based Combinatorial CRISPR-Cas9 Screens Identify Synergistic Modules in Human Cells.

Dacheng Ma, Zhen Xie, Shao Li, 2019, ACS synthetic biology.

Different patterns and functional importance of correlation between adjacent alternative exons in human and mouse

Xuegong Zhang, Chenghai Xue, Yanda Li, 2008 .

esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis

Zheng Wei, Yanda Li, Wei Zhang, 2018, Bioinform..

Tandem exon duplication tends to propagate rather than to create de novo alternative splicing.

Yanda Li, Yanda Li, Tao Peng, 2009, Biochemical and biophysical research communications.

dbRES: a web-oriented database for annotated RNA editing sites

Tao He, Yanda Li, Pufeng Du, 2006, Nucleic Acids Res..

Functional importance of different patterns of correlation between adjacent cassette exons in human and mouse

Yanda Li, Xiaowo Wang, Jianning Bi, 2008, BMC Genomics.

Support Vector Machine Approach for Retained Introns Prediction Using Sequence Features

Yanda Li, Huiyu Xia, Jianning Bi, 2006, ISNN.

基于生物网络的关系推断原理、方法与应用

Yanda Li, Peng Zhang, Shaoping Li, 2021, SCIENTIA SINICA Informationis.

AsMamDB: an alternative splice database of mammals

Qing Zhou, Xin Lu, Yanda Li, 2001, Nucleic Acids Res..

Modularity-based credible prediction of disease genes and detection of disease subtypes on the phenotype-gene heterogeneous network

Xin Yao, Yanda Li, Shao Li, 2011, BMC Systems Biology.

Identification and Comparison of Motifs in Brain-Specific and Muscle-Specific Alternative Splicing

Yanda Li, Jianning Bi, Yanda Li, 2006, TAMC.

CRISPR-ERA: a comprehensive design tool for CRISPR-mediated gene editing, repression and activation

Zheng Wei, Yanda Li, Honglei Liu, 2015, Bioinform..

INFERRING PROTEIN-PROTEIN INTERACTIONS FROM MESSENGER RNA EXPRESSION PROFILES WITH SVM

Yanda Li, L. Ji, Jun Cai, 2005 .

Modular Screening Reveals Driver Induced Additive Mechanisms of Baicalin and Jasminoidin on Cerebral Ischemia Therapy

Zhong Wang, Jun Liu, Ya-Nan Yu, 2022, Frontiers in Cardiovascular Medicine.

OP-Synthetic: identification of optimal genetic manipulations for the overproduction of native and non-native metabolites

Xiaowo Wang, Yanda Li, Honglei Liu, 2014, Quantitative Biology.

Symptom combinations associated with outcome and therapeutic effects in a cohort of cases with SARS.

A Joseph Layon, Yanda Li, Shao Li, 2006, The American journal of Chinese medicine.

Constrained Optimization Using Triple Spaces Cultured Genetic Algorithm

Yanda Li, Wanwan Tang, Yanda Li, 2008, 2008 Fourth International Conference on Natural Computation.

Classifying G-protein coupled receptors with bagging classification tree

Jun Cai, Ying Huang, Yanda Li, 2004, Comput. Biol. Chem..

Interaction between variants of two glycosyltransferase genes in IgA nephropathy.

Xuegong Zhang, Yanda Li, Lei Yu, 2009, Kidney international.

Multi-locus association study of schizophrenia susceptibility genes with a posterior probability method

Xuegong Zhang, Yan Shen, Qi Xu, 2005, Science in China Series C: Life Sciences.

BIOINFORMATICS ORIGINAL PAPER Sequence analysis

Xuegong Zhang, Yanda Li, Jin Gu, 2005 .

Identification of alternative 5 0 / 3 0 splice sites based on the mechanism of splice site competition

Yanda Li, Huiyu Xia, J. Bi, 2006 .

The effect of U1 snRNA binding free energy on the selection of 5' splice sites.

Xuegong Zhang, Yanda Li, Huiyu Xia, 2005, Biochemical and biophysical research communications.

Classifying G-protein Coupled Receptors with Support Vector Machine

Ying Huang, Yanda Li, Yanda Li, 2004, ISNN.

Understanding ZHENG in traditional Chinese medicine in the context of neuro-endocrine-immune network.

Xuegong Zhang, Shao Li, Yanda Li, 2007, IET systems biology.

Identification of phylogenetically conserved microRNA cis-regulatory elements across 12 Drosophila species

Michael Q. Zhang, Yanda Li, Jin Gu, 2008, Bioinform..

Multi-Locus Penetrance Variance Analysis Method for Association Study in Complex Diseases

Yanda Li, Zhongqi Zhang, Xuegong Zhang, 2006, Human Heredity.

High-resolution human core-promoter prediction with CoreBoost_HM.

Michael Q. Zhang, Yanda Li, Xiaowo Wang, 2009, Genome research.

dbNEI2.0: building multilayer network for drug-NEI-disease

Jing Zhang, Tao Ma, Yanda Li, 2008, Bioinform..

A simple strategy for detecting outlier samples in microarray data

Xuesong Lu, Yanda Li, Xuegong Zhang, 2004, ICARCV 2004 8th Control, Automation, Robotics and Vision Conference, 2004..