Hervé Philippe

发表

New Efficient Algorithm for Modeling Partial and Complete Gene Transfer Scenarios

Vladimir Makarenkov, Alix Boc, Charles F. Delwiche, 2006, Data Science and Classification.

Not only better sampling, but also better modelling

Hervé Philippe, O. Rota Stabelli, Davide Pisani, 2013 .

BMC Bioinformatics BioMed Central Methodology article A maximum likelihood framework for protein design

Hervé Philippe, Nicolas Lartillot, Cécile Bonnard, 2006 .

Uniformization for sampling realizations of Markov processes: applications to Bayesian implementations of codon substitution models

Hervé Philippe, Nicolas Lartillot, Nicolas Rodrigue, 2008, Bioinform..

Lack of resolution in the animal phylogeny: closely spaced cladogeneses or undetected systematic errors?

Hervé Philippe, Denis Baurain, H. Philippe, 2007, Molecular biology and evolution.

Bayesian Comparisons of Codon Substitution Models

Hervé Philippe, Nicolas Lartillot, Nicolas Rodrigue, 2008, Genetics.

Detecting and overcoming systematic errors in genome-scale phylogenies.

Naiara Rodríguez-Ezpeleta, Hervé Philippe, Nicolas Lartillot, 2007, Systematic biology.

The origin of red algae and the evolution of chloroplasts

Hervé Philippe, David Moreira, H. Philippe, 2000, Nature.

Monophyly of Primary Photosynthetic Eukaryotes: Green Plants, Red Algae, and Glaucophytes

Naiara Rodríguez-Ezpeleta, Hervé Philippe, Gertraud Burger, 2005, Current Biology.

A dirichlet process covarion mixture model and its assessments using posterior predictive discrepancy tests.

Hervé Philippe, Nicolas Lartillot, Nicolas Rodrigue, 2010, Molecular biology and evolution.

State-of the art methodologies dictate new standards for phylogenetic analysis

Tal Pupko, Hervé Philippe, David A Liberles, 2012, BMC Evolutionary Biology.

Archaeal phylogeny based on ribosomal proteins.

Hervé Philippe, Oriane Matte-Tailliez, Céline Brochier, 2002, Molecular biology and evolution.

Evolution of eukaryotic translation elongation and termination factors: variations of evolutionary rate and genetic code deviations.

Hervé Philippe, David Moreira, H. Philippe, 2002, Molecular biology and evolution.

Eubacterial phylogeny based on translational apparatus proteins.

Hervé Philippe, Eric Bapteste, Céline Brochier, 2002, Trends in genetics : TIG.

The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba

Terry Gaasterland, Hervé Philippe, Eric Bapteste, 2002, Proceedings of the National Academy of Sciences of the United States of America.

The African coelacanth genome provides insights into tetrapod evolution

Eric S. Lander, Sonja J. Prohaska, Peter F. Stadler, 2013 .

Pitfalls in supermatrix phylogenomics

Frédéric Delsuc, Hervé Philippe, Vincent Ranwez, 2017 .

Early–branching or fast–evolving eukaryotes? An answer based on slowly evolving positions

Hervé Philippe, H. Philippe, 2000, Proceedings of the Royal Society of London. Series B: Biological Sciences.

Statistical potentials for improved structurally constrained evolutionary models.

Hervé Philippe, Nicolas Lartillot, Nicolas Rodrigue, 2010, Molecular biology and evolution.

Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profiles

Hervé Philippe, Nicolas Lartillot, Nicolas Rodrigue, 2010, Proceedings of the National Academy of Sciences.

Autochthonous eukaryotic diversity in hydrothermal sediment and experimental microcolonizers at the Mid-Atlantic Ridge

Purificación López-García, Hervé Philippe, David Moreira, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Exploring fast computational strategies for probabilistic phylogenetic analysis.

Hervé Philippe, Nicolas Lartillot, Nicolas Rodrigue, 2007, Systematic biology.

Computational methods for evaluating phylogenetic models of coding sequence evolution with dependence between codons.

Hervé Philippe, Nicolas Lartillot, Nicolas Rodrigue, 2009, Molecular biology and evolution.

Phylotranscriptomic consolidation of the jawed vertebrate timetree

Frédéric Delsuc, Hervé Philippe, Iker Irisarri, 2017, Nature Ecology & Evolution.

Functional divergence prediction from evolutionary analysis: a case study of vertebrate hemoglobin.

Hervé Philippe, Philippe Lopez, Simonetta Gribaldo, 2003, Molecular biology and evolution.

Origin of land plants revisited in the light of sequence contamination and missing data

Hervé Philippe, H. Philippe, H. Brinkmann, 2012, Current Biology.

The potential value of indels as phylogenetic markers: position of trichomonads as a case study.

Hervé Philippe, Eric Bapteste, H. Philippe, 2002, Molecular biology and evolution.

An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics.

Hervé Philippe, H. Philippe, H. Brinkmann, 2005, Systematic biology.

Phylogeny: A non-hyperthermophilic ancestor for Bacteria

Hervé Philippe, Céline Brochier, H. Philippe, 2002, Nature.

Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate

Frédéric Delsuc, Boris Lenhard, Hans Lehrach, 2010, Science.

The Root of the Tree of Life in the Light of the Covarion Model

Hervé Philippe, Philippe Lopez, Patrick Forterre, 1999, Journal of Molecular Evolution.

Can the Cambrian explosion be inferred through molecular phylogeny

Anne Chenuil, Hervé Philippe, H. Philippe, 1994 .

Heterotachy and long-branch attraction in phylogenetics

Frédéric Delsuc, Hervé Philippe, Nicolas Rodrigue, 2005, BMC Evolutionary Biology.

Conditional Approximate Bayesian Computation: A New Approach for Across-Site Dependency in High-Dimensional Mutation–Selection Models

Hervé Philippe, Nicolas Lartillot, Nicolas Rodrigue, 2018, Molecular biology and evolution.

Evaluation of the models handling heterotachy in phylogenetic inference

Hervé Philippe, Nicolas Lartillot, Nicolas Rodrigue, 2007, BMC Evolutionary Biology.

Horizontal gene transfer and phylogenetics.

Hervé Philippe, C. Douady, H. Philippe, 2003, Current opinion in microbiology.