Pan Du

发表

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

Kevin C. Dorff, Aaron M. Smalter, Stephen C. Harris, 2010, Nature Biotechnology.

The disease and gene annotations (DGA): an annotation resource for human disease

Wei Xu, Jun Liu, Tian Xia, 2012, Nucleic Acids Res..

Visual presentation as a welcome alternative to textual presentation of gene annotation information.

Pan Du, Hui Lu, Warren A Kibbe, 2010, Advances in experimental medicine and biology.

A collection of bioconductor methods to visualize gene-list annotations

W. Kibbe, Simon M. Lin, Pan Du, 2010, BMC Research Notes.

Activated TLR Signaling in Atherosclerosis among Women with Lower Framingham Risk Score: The Multi-Ethnic Study of Atherosclerosis

Chiang-Ching Huang, N. Jafari, D. Lloyd‐Jones, 2011, PloS one.

Using Free and Open-Source Bioconductor Packages to Analyze Array Comparative Genomics Hybridization (aCGH) Data

T. Ouchi, N. Jafari, Simon M. Lin, 2009, Current genomics.

Model-based variance-stabilizing transformation for Illumina microarray data

W. Huber, W. Kibbe, Pan Du, 2008, Nucleic acids research.

Using lumi , a package processing Illumina Microarray

W. Kibbe, Pan Du, Gang Feng, 2007 .

Expression of cyclophilin B is associated with malignant progression and regulation of genes implicated in the pathogenesis of breast cancer.

Simon M. Lin, Pan Du, C. Clevenger, 2009, The American journal of pathology.

Susceptibility to glaucoma: differential comparison of the astrocyte transcriptome from glaucomatous African American and Caucasian American donors

Lin Chen, Sean M. Riordan, Simon M. Lin, 2008, Genome Biology.

Mining Heuristic-based Baseline Removal Algorithm for SELDI Proteomics Data

W. Kibbe, Pan Du, S. Lin, 2006 .

Egr-1 Induces a Profibrotic Injury/Repair Gene Program Associated with Systemic Sclerosis

Simon M. Lin, M. Whitfield, Pan Du, 2011, PloS one.

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis

Xiao Zhang, Pan Du, Simon M. Lin, 2010, BMC Bioinformatics.

lumi: a pipeline for processing Illumina microarray

Pan Du, Simon M. Lin, Warren A. Kibbe, 2008, Bioinform..

L-methionine-induced alterations in molecular signatures in MCF-7 and LNCaP cancer cells

Wancai Yang, Simon M. Lin, K. Bland, 2011, Journal of Cancer Research and Clinical Oncology.

A statistical method to estimate DNA copy number from Illumina high-density methylation arrays

L. Hou, W. Kibbe, Simon M. Lin, 2013 .

Gene Expression Changes in Retinal Müller (Glial) Cells Exposed to Elevated Pressure

Simon M. Lin, Pan Du, M. Hernandez, 2011, Current eye research.

Genome-wide study of DNA methylation alterations in response to diazinon exposure in vitro.

L. Hou, A. Baccarelli, Simon M Lin, 2012, Environmental toxicology and pharmacology.

Gene expression variation between African Americans and whites is associated with coronary artery calcification: the multiethnic study of atherosclerosis.

L. Hou, Chiang-Ching Huang, D. Lloyd‐Jones, 2011, Physiological genomics.

From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations

Gang Feng, Pan Du, Jie Song, 2009, Bioinform..

Bioinformatics Original Paper Improved Peak Detection in Mass Spectrum by Incorporating Continuous Wavelet Transform-based Pattern Matching

Pan Du, Simon M. Lin, Warren A. Kibbe, 2022 .

Gene Expression and Functional Studies of the Optic Nerve Head Astrocyte Transcriptome from Normal African Americans and Caucasian Americans Donors

Sean M. Riordan, Simon M. Lin, Pan Du, 2008, PloS one.

nuID: a universal naming scheme of oligonucleotides for Illumina, Affymetrix, and other microarrays

Warren A Kibbe, W. Kibbe, Simon M. Lin, 2007, Biology Direct.

DNA methylation alterations in response to pesticide exposure in vitro

L. Hou, A. Baccarelli, M. Soares, 2012, Environmental and molecular mutagenesis.

The early growth response gene Egr2 (Alias Krox20) is a novel transcriptional target of transforming growth factor-β that is up-regulated in systemic sclerosis and mediates profibrotic responses.

Swati Bhattacharyya, John Varga, Minghua Wu, 2011, The American journal of pathology.

Evaluation of VST algorithm in lumi package

W. Huber, Pan Du, S. Lin, 2007 .

Genomics of Human Intracranial Aneurysm Wall

N. Jafari, Simon M. Lin, R. Shenkar, 2009, Stroke.

Genome-Wide DNA Methylation Indicates Silencing of Tumor Suppressor Genes in Uterine Leiomyoma

Jian-Jun Wei, Serdar E. Bulun, Simon M. Lin, 2012, PloS one.

Differential Effects of Elevated Hydrostatic Pressure on Gene Expression and Protein Phosphorylation in Optic Nerve Head Astrocytes

Simon M. Lin, Pan Du, T. Lukas, 2011 .

Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching

W. Kibbe, Simon M. Lin, Pan Du, 2006 .

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

Todd H. Stokes, Kevin C. Dorff, Aaron M. Smalter, 2010, Nature Biotechnology.

nuID: a universal naming scheme of oligonucleotides for Illumina, Affymetrix, and other microarrays

W. Kibbe, Simon M. Lin, Pan Du, 2007, Biology Direct.

Genomics of Human Intracranial Aneurysm Wall

N. Jafari, Simon M. Lin, R. Shenkar, 2009, Stroke.

Expression of cyclophilin B is associated with malignant progression and regulation of genes implicated in the pathogenesis of breast cancer.

Simon M. Lin, Pan Du, C. Clevenger, 2009, The American journal of pathology.

Suppression by L-methionine of cell cycle progression in LNCaP and MCF-7 cells but not benign cells.

Wancai Yang, Simon M. Lin, K. Bland, 2010, Anticancer research.

Predicting protein functions with message passing algorithms

Andrea Pagnani, Michele Leone, W. Kibbe, 2004, Bioinform..