Kyungsook Han

发表

Computational Identification of Interaction Motifs in Hepatitis C Virus NS5A and Human Proteins

Kyungsook Han, Guang-Zheng Zhang, Guang-Zheng Zhang, 2007, 2007 International Conference on Convergence Information Technology (ICCIT 2007).

An Algorithm for Finding Functional Modules and Protein Complexes in Protein-Protein Interaction Networks

De-shuang Huang, Kyungsook Han, Guangyu Cui, 2008, Journal of biomedicine & biotechnology.

Prediction of protein-protein interactions based on protein-protein correlation using least squares regression.

Lei Zhang, De-shuang Huang, Kyungsook Han, 2014, Current protein & peptide science.

Prediction of protein-protein interactions between viruses and human by an SVM model

Kyungsook Han, Chao Fang, Guangyu Cui, 2012, BMC Bioinformatics.

A generative model for constructing nucleic acid sequences binding to a protein

Kyungsook Han, Jinho Im, B. Park, 2019, BMC Genomics.

A generalized approach to predicting protein-protein interactions between virus and host

Xiaoping Zhou, Kyungsook Han, B. Park, 2018, BMC Genomics.

PNImodeler: web server for inferring protein-binding nucleotides from sequence data

De-shuang Huang, Kyungsook Han, B. Park, 2015, BMC Genomics.

An E cient Algorithm for Ordering Random Genomic Clones

M. Noordewier, Kyungsook Han, 2007 .

Computational analysis of hydrogen bonds in protein–RNA complexes for interaction patterns

Kyungsook Han, Seong-Wook Lee, Hyunwoo Kim, 2003, FEBS letters.

BSFINDER: finding binding sites of HCV proteins using a support vector machine.

Kyungsook Han, Kyungsook Han, Yu Chen, 2009, Protein and peptide letters.

Qualitative reasoning of dynamic gene regulatory interactions from gene expression data

Kyungsook Han, Yu Chen, B. Park, 2010, BMC Genomics.

A reliability measure of protein–protein interactions and a reliability measure-based search engine

Kyungsook Han, B. Park, 2010 .

A generalized approach to predicting protein-protein interactions between virus and host

Xiaoping Zhou, Kyungsook Han, B. Park, 2018 .

Constructing cancer patient-specific and group-specific gene networks with multi-omics data

De-shuang Huang, Kyungsook Han, Wook Lee, 2020, BMC Medical Genomics.

Finding prognostic gene pairs for cancer from patient-specific gene networks

Kyungsook Han, B. Park, Wook Lee, 2019, BMC Medical Genomics.

Classification of diffusion tensor images for the early detection of Alzheimer's disease

Byungkyu Brian Park, Kyungsook Han, Wook Lee, 2013, Comput. Biol. Medicine.

An improved method for predicting interactions between virus and human proteins

Xiang Zhou, Kyungsook Han, De-Shuang Huang, 2017, J. Bioinform. Comput. Biol..

Integration of Multi-Omics Data for Gene Regulatory Network Inference and Application to Breast Cancer

Kyungsook Han, De-Shuang Huang, Lin Yuan, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Comparative Analysis of Gene Correlation Networks of Breast Cancer Patients Based on Mutations in TP53

Kyungsook Han, Jinho Im, B. Park, 2022, Biomolecules.

Proceedings of the 9th international conference on Intelligent Computing Theories and Technology

Kang-Hyun Jo, Kyungsook Han, De-Shuang Huang, 2013 .

DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes

Kyungsook Han, Zhenghao Guo, Qinhu Zhang, 2022, PLoS Comput. Biol..

Proceedings of the 7th international conference on Intelligent Computing: bio-inspired computing and applications

Kyungsook Han, Yong Gan, De-Shuang Huang, 2011, ICIC 2011.

Predicting Lymph Node Metastasis and Distant Metastasis using Differential Correlations of miRNAs and Their Target RNAs in Cancer

Kyungsook Han, B. Park, Wook Lee, 2022, 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

PNImodeler: web server for inferring protein-binding nucleotides from sequence data

De-shuang Huang, Kyungsook Han, B. Park, 2015, BMC Genomics.

SVM-Based Classification of Diffusion Tensor Imaging Data for Diagnosing Alzheimer's Disease and Mild Cognitive Impairment

Byungkyu Brian Park, Kyungsook Han, Wook Lee, 2015, ICIC.

Predicting lymph node metastasis and prognosis of individual cancer patients based on miRNA-mediated RNA interactions

Kyungsook Han, Wook Lee, Shulei Ren, 2022, BMC Medical Genomics.

A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network

Xiaobo Zhou, Zhu-Hong You, Kyungsook Han, 2010, BMC Bioinformatics.

Analysis of MicroRNA and Transcription Factor Regulation

Kyungsook Han, De-Shuang Huang, Wei-Li Guo, 2016, ICIC.

GeneNetFinder2: Improved Inference of Dynamic Gene Regulatory Relations with Multiple Regulators

Kyungsook Han, Jeonghoon Lee, Kyungsook Han, 2016, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Constructing Gene Co-expression Networks for Prognosis of Lung Adenocarcinoma

Byungkyu Brian Park, Kyungsook Han, Jinho Im, 2018, ICIC.

Identification of the +1 ribosomal frameshifting site of LRV1–4 by mutational analysis

Kyungsook Han, Hong-Jin Kim, J. Choi, 2005, Archives of pharmacal research.

Prediction of Readthroughs Based on the Statistical Analysis of Nucleotides Around Stop Codons

Sanghoon Moon, Yanga Byun, Kyungsook Han, 2006, International Conference on Computational Science.

Prediction of Ribosomal Frameshift Signals of User-Defined Models

Kyungsook Han, Sanghoon Moon, Yanga Byun, 2005, International Conference on Computational Science.

Predicting genes expressed via −1 and +1 frameshifts

Sanghoon Moon, Yanga Byun, Kyungsook Han, 2004, Nucleic acids research.

WIG1 is crucial for AGO2-mediated ACOT7 mRNA silencing via miRNA-dependent and -independent mechanisms

Jae-Seon Lee, M. Gorospe, Kyungsook Han, 2017, Nucleic acids research.

miRNA-Disease Association Prediction with Collaborative Matrix Factorization

Kyungsook Han, De-Shuang Huang, Zhen Shen, 2017, Complex..

DBBP: database of binding pairs in protein-nucleic acid interactions

Kyungsook Han, B. Park, Hyungchan Kim, 2014, BMC Bioinformatics.

Database of Protein-Nucleic Acid Binding Pairs at Atomic and Residue Levels

Byungkyu Brian Park, Kyungsook Han, Sangmin Lee, 2013, ICIC.

DBBP: database of binding pairs in protein-nucleic acid interactions

Byungkyu Brian Park, Kyungsook Han, Hyungchan Kim, 2014, BMC Bioinformatics.

Isolation of specific and high-affinity RNA aptamers against NS3 helicase domain of hepatitis C virus.

Kyungsook Han, S. Jang, K. Chung, 2004, RNA.

Multi-Scale Capsule Network for Predicting DNA-Protein Binding Sites

Kyungsook Han, De-Shuang Huang, Qinhu Zhang, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A Deep Learning Model for RNA-Protein Binding Preference Prediction Based on Hierarchical LSTM and Attention Network

Kyungsook Han, De-Shuang Huang, Qinhu Zhang, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Predicting Interactions between Virus and Host Proteins Using Repeat Patterns and Composition of Amino Acids

Xiang Zhou, Kyungsook Han, De-Shuang Huang, 2018, Journal of healthcare engineering.

Intracellular expression of the T-cell factor-1 RNA aptamer as an intramer

Kyungsook Han, Jaehoon Yu, Keerang Park, 2006, Molecular Cancer Therapeutics.

KGVDB: a population-based genomic map of CNVs tagged by SNPs in Koreans

Sanghoon Moon, Kyungsook Han, Kiejung Park, 2013, Bioinform..

PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots

Yanga Byun, Kyungsook Han, Kyungsook Han, 2009, Bioinform..

A generalized approach to predicting protein-protein interactions between virus and host

Xiaoping Zhou, Kyungsook Han, B. Park, 2018, BMC Genomics.

Prediction of protein-protein interactions between viruses and human by an SVM model

Kyungsook Han, Guangyu Cui, Chao Fang, 2012, BMC Bioinformatics.

Sequence-based prediction of protein-protein interactions by means of rotation forest and autocorrelation descriptor.

Kyungsook Han, De-Shuang Huang, Jun-Feng Xia, 2010, Protein and peptide letters.

ModuleSearch: finding functional modules in a protein–protein interaction network

Kyungsook Han, Rojan Shrestha, Guangyu Cui, 2012, Computer methods in biomechanics and biomedical engineering.

Hepatitis C virus contact map prediction based on binary encoding strategy

Kyungsook Han, Guang-Zheng Zhang, Guang-Zheng Zhang, 2007, Comput. Biol. Chem..

PSIbase: a database of Protein Structural Interactome map (PSIMAP)

Kyungsook Han, Sungsam Gong, Giseok Yoon, 2005, Bioinform..

PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures

Yanga Byun, Kyungsook Han, Kyungsook Han, 2006, Nucleic Acids Res..

PseudoViewer: automatic visualization of RNA pseudoknots

Kyungsook Han, Yujin Lee, Wootaek Kim, 2002, ISMB.

A Method for Constructing an Integrative Network of Competing Endogenous RNAs

Wook Lee, Kyungsook Han, Seokwoo Lee, 2021, ICIC.

Mutli-Features Prediction of Protein Translational Modification Sites

Kyungsook Han, Asoke K. Nandi, Wenzheng Bao, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Sequence-Based Prediction of Putative Transcription Factor Binding Sites in DNA Sequences of Any Length

Kyungsook Han, Byungkyu Park, Wook Lee, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Intelligent Computing Theories and Technology

Kang-Hyun Jo, Kyungsook Han, De-Shuang Huang, 2013, Lecture Notes in Computer Science.

Mining Molecular Structure Data for Protein-RNA Interaction Propensities

Kyungsook Han, Sungwook Choi, Yanga Byun, 2011 .

Prediction of RNA-Binding Residues in Proteins Using the Interaction Propensities of Amino Acids and Nucleotides

Kyungsook Han, Jisu Kim, Rojan Shrestha, 2008, ICIC.

Predicting key long-range interaction sites by B-factors.

Kyungsook Han, De-Shuang Huang, Peng Chen, 2008, Protein and peptide letters.

Constructive Prediction of Potential RNA Aptamers for a Protein Target

Kyungsook Han, Wook Lee, Kyungsook Han, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

HPID: The Human Protein Interaction Database

Byungkyu Brian Park, Kyungsook Han, Jinsun Hong, 2004, Bioinform..

Prediction of RNA Pseudoknots-Comparative Study of Genetic Algorithms

Kyungsook Han, Kyungsook Han, Dongkyu Lee, 2002 .

Discovering protein-binding RNA motifs with a generative model of RNA sequences

Kyungsook Han, Byungkyu Park, Kyungsook Han, 2020, Comput. Biol. Chem..

Modeling the interactions of Alzheimer-related genes from the whole brain microarray data and diffusion tensor images of human brain

Byungkyu Brian Park, Kyungsook Han, Wook Lee, 2012, BMC Bioinformatics.

Connectivity Analysis of Hippocampus in Alzheimer's Brain Using Probabilistic Tractography

Byungkyu Brian Park, Kyungsook Han, Md. Kamrul Hasan, 2011, ICIC.

A Layout Algorithm for Signal Transduction Pathways as Two-Dimensional Drawings with Spline Curves

Donghoon Lee, Kyungsook Han, Byoung-Hyun Ju, 2005, International Conference on Computational Science.

Discovering the interaction propensities of amino acids and nucleotides from protein-RNA complexes.

Kyungsook Han, Euna Jeong, Kyungsook Han, 2003, Molecules and cells.

WebInterViewer: visualizing and analyzing molecular interaction networks

Kyungsook Han, Byong-Hyon Ju, Haemoon Jung, 2004, Nucleic Acids Res..

Visualization and analysis of protein interactions

Byungkyu Brian Park, Kyungsook Han, Byong-Hyon Ju, 2003, Bioinform..

Intelligent Computing Methodologies

Kyungsook Han, De-Shuang Huang, M. Michael Gromiha, 2017, Lecture Notes in Computer Science.

FSDB: A frameshift signal database

Sanghoon Moon, Yanga Byun, Kyungsook Han, 2007, Computational Biology and Chemistry.

A general computational model for predicting ribosomal frameshifts in genome sequences

Sanghoon Moon, Yanga Byun, Kyungsook Han, 2007, Comput. Biol. Medicine.

Modeling the interactions of Alzheimer-related genes from the whole brain microarray data and diffusion tensor images of human brain

Kyungsook Han, B. Park, Wook Lee, 2012, BMC Bioinformatics.

Prediction of Binding Sites in HCV Protein Complexes Using a Support Vector Machine

Kyungsook Han, Jaetak Lee, Taihui Yoo, 2008, ICIC.

GeneCoNet: A web application server for constructing cancer patient-specific gene correlation networks with prognostic gene pairs

Byungkyu Brian Park, Wook Lee, Kyungsook Han, 2021, Comput. Methods Programs Biomed..

Prevention of passively transferred experimental autoimmune myasthenia gravis by an in vitro selected RNA aptamer

Kyungsook Han, Seong-Wook Lee, B. Hwang, 2003, FEBS letters.

Diagnosis of Parkinson’s Disease Using Two Types of Biomarkers and Characterization of Fiber Pathways

Kyungsook Han, B. Park, Wook Lee, 2014 .

A New Approach to Deriving Prognostic Gene Pairs From Cancer Patient-Specific Gene Correlation Networks

Kyungsook Han, B. Park, Wook Lee, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Constructing a Cancer Patient-Specific Network Based on Second-Order Partial Correlations of Gene Expression and DNA Methylation

Kyungsook Han, Wook Lee, Seokwoo Lee, 2022, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Complexity management in visualizing protein interaction networks

Kyungsook Han, Byong-Hyon Ju, Kyungsook Han, 2003, ISMB.

Dynamic Identification and Visualization of Gene Regulatory Networks from Time-Series Gene Expression Profiles

Kyungsook Han, Yu Chen, Kyungsook Han, 2009, ICIC.

Web Service for Finding Ribosomal Frameshifts

Sanghoon Moon, Yanga Byun, Kyungsook Han, 2006, International Conference on Computational Science.

A fast layout algorithm for protein interaction networks

Kyungsook Han, Byong-Hyon Ju, Kyungsook Han, 2003, Bioinform..

Predicting TF-DNA Binding Motifs from ChIP-seq Datasets Using the Bag-Based Classifier Combined With a Multi-Fold Learning Scheme

Kyungsook Han, De-Shuang Huang, Qinhu Zhang, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

PPISearchEngine: gene ontology-based search for protein–protein interactions

Kyungsook Han, De-Shuang Huang, Guangyu Cui, 2013, Computer methods in biomechanics and biomedical engineering.

Intelligent Computing Methodologies

Yuzuru Tanaka, Kyungsook Han, De-Shuang Huang, 2018, Lecture Notes in Computer Science.

Finding motif pairs in the interactions between heterogeneous proteins via bootstrapping and boosting

Kyungsook Han, De-Shuang Huang, Jisu Kim, 2009, BMC Bioinformatics.

Gene expression data classification using locally linear discriminant embedding

Lei Zhang, Kyungsook Han, De-Shuang Huang, 2010, Comput. Biol. Medicine.

Discovering Inter-Domain Paths between Hepatitis C Virus NS5A and Human Liver Proteins

Kyungsook Han, Guang-Zheng Zhang, Guang-Zheng Zhang, 2007, 2007 Frontiers in the Convergence of Bioscience and Information Technologies.

Finding miRNA–RNA Network Biomarkers for Predicting Metastasis and Prognosis in Cancer

Kyungsook Han, B. Park, Seokwoo Lee, 2023, International journal of molecular sciences.

Intelligent Computing in Bioinformatics

Kyungsook Han, De-Shuang Huang, Michael Gromiha, 2014, Lecture Notes in Computer Science.

Multi-Layered Networks for Visualizing the Interactions between Heterogeneous Proteins

Kyungsook Han, Yu Chen, Guangyu Cui, 2007, 2007 Frontiers in the Convergence of Bioscience and Information Technologies.

PNImodeler: web server for inferring protein-binding nucleotides from sequence data

De-shuang Huang, Kyungsook Han, B. Park, 2015, BMC Genomics.

Prediction of Cancer Metastasis Using Correlations Between miRNAs and Competing Endogenous RNAs

Kyungsook Han, B. Park, Seokwoo Lee, 2023, IEEE Transactions on NanoBioscience.

Prediction of Ribosomal -1 Frameshifts in the Escherichia coli K12 Genome

Sanghoon Moon, Yanga Byun, Kyungsook Han, 2006, ICIC.

Prediction of Ribosomal Frameshift Signals of User-Defined Models

Kyungsook Han, Sanghoon Moon, Yanga Byun, 2005, International Conference on Computational Science.

Computational Identification of -1 Frameshift Signals

Sanghoon Moon, Yanga Byun, Kyungsook Han, 2004, International Conference on Computational Science.

PRIdictor: Protein-RNA Interaction predictor

Byungkyu Brian Park, Kyungsook Han, Wook Lee, 2016, Biosyst..

Finding Protein-Binding Nucleic Acid Sequences Using a Long Short-Term Memory Neural Network

Byungkyu Brian Park, Kyungsook Han, Jinho Im, 2018, ICIC.

Predicting protein-binding regions in RNA using nucleotide profiles and compositions

Byungkyu Brian Park, Kyungsook Han, Wook Lee, 2017, BMC Systems Biology.

Data of protein-RNA binding sites

Kyungsook Han, B. Park, Daesik Choi, 2016, Data in brief.

Predicting protein-binding RNA nucleotides using the feature-based removal of data redundancy and the interaction propensity of nucleotide triplets

Kyungsook Han, Sungwook Choi, 2013, Comput. Biol. Medicine.

Prediction of RNA-binding amino acids from protein and RNA sequences

Kyungsook Han, Sungwook Choi, Kyungsook Han, 2011, BMC Bioinformatics.

InfarctSizer: computing infarct volume from brain images of a stroke animal model

Kyungsook Han, Jaetak Lee, Ja-Kyeong Lee, 2011, Computer methods in biomechanics and biomedical engineering.

An Algorithm for Finding Functional Modules and Protein Complexes in Protein-Protein Interaction Networks

De-shuang Huang, Kyungsook Han, Guangyu Cui, 2008, Journal of biomedicine & biotechnology.

Identifying Functional Groups by Finding Cliques and Near-Cliques in Protein Interaction Networks

Kyungsook Han, Yu Chen, Guangyu Cui, 2007, 2007 Frontiers in the Convergence of Bioscience and Information Technologies.

Predicting Transcription Factor Binding Sites in DNA Sequences Without Prior Knowledge

Byungkyu Brian Park, Kyungsook Han, Chungkeun Lee, 2016, ICIC.

Constructing Integrative ceRNA Networks and Finding Prognostic Biomarkers in Renal Cell Carcinoma

Kyungsook Han, B. Park, Wook Lee, 2022, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Prediction of common folding structures of homologous RNAs.

Kyungsook Han, K. Han, H. J. Kim, 1993, Nucleic acids research.