B. Gibson

发表

Structural studies of the scrapie prion protein using mass spectrometry and amino acid sequencing.

L. Hood, S. Prusiner, A. Burlingame, 1993, Biochemistry.

Regulatory Control or Oxidative Damage? Proteomic Approaches to Interrogate the Role of Cysteine Oxidation Status in Biological Processes*

Bradford W. Gibson, Jason M. Held, B. Gibson, 2011, Molecular & Cellular Proteomics.

Low-mass ions produced from peptides by high-energy collision-induced dissociation in tandem mass spectrometry

B W Gibson, M. Baldwin, K. Medzihradszky, 1993, Journal of the American Society for Mass Spectrometry.

Pattern-based algorithm for peptide sequencing from tandem high energy collision-induced dissociation mass spectra

A. Burlingame, B. Gibson, W. Hines, 1992, Journal of the American Society for Mass Spectrometry.

Structural, Kinetic and Proteomic Characterization of Acetyl Phosphate-Dependent Bacterial Protein Acetylation

Dylan J. Sorensen, M. Scholle, B. Gibson, 2014, PloS one.

QuaMeter: multivendor performance metrics for LC-MS/MS proteomics instrumentation.

Lorenzo J. Vega-Montoto, B. Gibson, D. Tabb, 2012, Analytical chemistry.

Multiplexed, Scheduled, High-Resolution Parallel Reaction Monitoring on a Full Scan QqTOF Instrument with Integrated Data-Dependent and Targeted Mass Spectrometric Workflows.

Matthew J. Rardin, Dylan J. Sorensen, Jason M. Held, 2015, Analytical chemistry.

IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering.

Michael D. Litton, Scott M. Sobecki, B. Gibson, 2009, Journal of proteome research.

Label-Free Quantitation and Mapping of the ErbB2 Tumor Receptor by Multiple Protease Digestion with Data-Dependent (MS1) and Data-Independent (MS2) Acquisitions

Dylan J. Sorensen, Alexandria K. D’Souza, Jason M. Held, 2013, International journal of proteomics.

Lysine desuccinylase SIRT5 binds to cardiolipin and regulates the electron transport chain

Matthew J. Rardin, B. Gibson, E. Prochownik, 2017, The Journal of Biological Chemistry.

Characterization of the human heart mitochondrial proteome

Bradford W. Gibson, Eoin Fahy, Roderick A. Capaldi, 2003, Nature Biotechnology.

Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways

Sean D. Mooney, Birgit Schilling, Matthew J. Rardin, 2013, Proceedings of the National Academy of Sciences.

MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides

Birgit Schilling, Bradford W. Gibson, Malin M. Young, 2003, Journal of the American Society for Mass Spectrometry.

Analysis of the in vivo phosphorylation state of rabbit skeletal muscle glycogen synthase by fast-atom-bombardment mass spectrometry.

B. Gibson, D. Williams, C. Holmes, 1988, European journal of biochemistry.

Huntingtin Phosphorylation Sites Mapped by Mass Spectrometry

Michael P. Cusack, C. Ross, Cameron Torcassi, 2006, Journal of Biological Chemistry.

K 63 Polyubiquitination ErbB 2 Trafficking and Degradation Associated with K 48 and Updated

Jason M. Held, C. Benz, B. Gibson, 2014 .

ErbB2 trafficking and degradation associated with K48 and K63 polyubiquitination.

Jason M. Held, C. Benz, B. Gibson, 2010, Cancer research.

ErbB 2 Trafficking and Degradation Associated with K 48 and K 63 Polyubiquitination

Jason M. Held, C. Benz, B. Gibson, 2010 .

No Consistent Bioenergetic Defects in Presynaptic Nerve Terminals Isolated from Mouse Models of Alzheimer's Disease

S. Melov, B. Gibson, D. Bredesen, 2012, The Journal of Neuroscience.

Sirt3 Regulates Metabolic Flexibility of Skeletal Muscle Through Reversible Enzymatic Deacetylation

Matthew J. Rardin, C. Kahn, B. Gibson, 2013, Diabetes.

Proteome and Secretome Dynamics of Human Retinal Pigment Epithelium in Response to Reactive Oxygen Species

B. Gibson, J. Meyer, B. Schilling, 2019, Scientific Reports.

Proteome and Secretome Dynamics of Stem Cell-Derived Retinal Pigmented Epithelium in Response to Acute and Chronic ROS

B. Gibson, J. Meyer, B. Schilling, 2019, bioRxiv.

Characterization of a Cluster of Three Glycosyltransferase Enzymes Essential for Moraxella catarrhalis Lipooligosaccharide Assembly

B. Gibson, A. Campagnari, Katie J. Edwards, 2005, Journal of bacteriology.

Identification of a 3-Deoxy-d-manno-Octulosonic Acid Biosynthetic Operon in Moraxella catarrhalis and Analysis of a KdsA-Deficient Isogenic Mutant

B. Gibson, A. Campagnari, Nicole R. Luke, 2003, Infection and Immunity.

Lipooligosaccharide Pk(Galα1-4Galβ1-4Glc) Epitope of Moraxella catarrhalis Is a Factor in Resistance to Bactericidal Activity Mediated by Normal Human Serum

P. Densen, B. Gibson, M. Apicella, 2000, Infection and Immunity.

Moraxella catarrhalis Is a Factor in Resistance to Bactericidal Activity Mediated by Normal Human Serum

P. Densen, B. Gibson, M. Apicella, 2000 .

Cloning and Characterization of the Lipooligosaccharide Galactosyltransferase II Gene ofHaemophilus ducreyi

B. Gibson, R. Munson, B. Schilling, 2000, Journal of bacteriology.

Characterization of bacterial lipooligosaccharides by delayed extraction matrix-assisted laser desorption ionization time-of-flight mass spectrometry

B. Gibson, W. Hines, A. Falick, 1997 .

Phosphorylation of Mitochondrial Elongation Factor Tu in Ischemic Myocardium: Basis for Chloramphenicol-Mediated Cardioprotection

B. Gibson, R. Gottlieb, L. Spremulli, 2001, Circulation research.

Identification of alcaligin as the siderophore produced by Bordetella pertussis and B. bronchiseptica

C. H. Moore, B. Gibson, L. Foster, 1995, Journal of bacteriology.

Haemophilus ducreyi Produces a Novel Sialyltransferase

B. Gibson, R. Munson, J. Bozue, 1999, The Journal of Biological Chemistry.

Dietary Sugars Alter Hepatic Fatty Acid Oxidation via Transcriptional and Post-translational Modifications of Mitochondrial Proteins.

C. Kahn, B. Gibson, J. Meyer, 2019, Cell metabolism.

Genetic regulation of the human plasma proteome in 54,306 UK Biobank participants

Benjamin B. Sun, M. McCarthy, H. Kang, 2022, bioRxiv.

Metabolic incorporation of unnatural sialic acids into Haemophilus ducreyi lipooligosaccharides

C. Bertozzi, B. Gibson, B. Schilling, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Molecular Components of a Cell Death Pathway Activated by Endoplasmic Reticulum Stress*

B. Gibson, D. Bredesen, B. Schilling, 2004, Journal of Biological Chemistry.

SILAC Analysis Reveals Increased Secretion of Hemostasis-Related Factors by Senescent Cells

T. Oron, S. Mooney, P. Kapahi, 2019, Cell reports.

Temporal dynamics of liver mitochondrial protein acetylation and succinylation and metabolites due to high fat diet and/or excess glucose or fructose

Matthew J. Rardin, C. Kahn, B. Gibson, 2018, PloS one.

Multi-Omic Profiling Reveals the Opposing Forces of Excess Dietary Sugar and Fat on Liver Mitochondria Protein Acetylation and Succinylation

Matthew J. Rardin, C. Kahn, B. Gibson, 2018, bioRxiv.

Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma*

Michael J MacCoss, Lee Makowski, Brendan MacLean, 2015, Molecular & Cellular Proteomics.

Proteomic and immunochemical characterization of a role for stathmin in adult neurogenesis

B. Gibson, K. Jin, Lin Xie, 2004, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Characterization of lipooligosaccharides from Haemophilus ducreyi containing polylactosamine repeats

B. Gibson, M. Filiatrault, B. Schilling, 2002, Journal of the American Society for Mass Spectrometry.

Characterization of Exochelins of theMycobacterium bovis Type Strain and BCG Substrains

B. Gibson, M. Horwitz, Jovana Gobin, 1999, Infection and Immunity.

There Are Three Distinct Forms of Bombesin

B. Gibson, A. Falick, E. Spindel, 1996, The Journal of Biological Chemistry.

Strategy for the mass spectrometric verification and correction of the primary structures of proteins deduced from their DNA sequences.

K. Biemann, B. Gibson, 1984, Proceedings of the National Academy of Sciences of the United States of America.

The Streptococcus gordonii Platelet BindingProtein GspB Undergoes Glycosylation Independently ofExport

B. Gibson, B. Bensing, P. Sullam, 2004, Journal of bacteriology.

Structural elucidation of N-terminal post-translational modifications by mass spectrometry: application to chicken enolase and the alpha- and beta-subunits of bovine mitochondrial F1-ATPase.

B. Gibson, D. Williams, D. Daley, 1988, Analytical biochemistry.

Mass Spectrometric Identification of Novel Lysine Acetylation Sites in Huntingtin* □ S

Jason M. Held, L. Ellerby, B. Gibson, 2011 .

Analysis of the in vivo phosphorylation states of proteins by fast atom bombardment mass spectrometry and other techniques.

B. Gibson, C. Holmes, P. Cohen, 1991, Methods in enzymology.

Systematic Mapping of Posttranslational Modifications in Human Estrogen Receptor-α with Emphasis on Novel Phosphorylation Sites*S

Jason M. Held, C. Benz, M. Baldwin, 2009, Molecular & Cellular Proteomics.

receptor alpha, with emphasis on novel phosphorylation sites

Jason M. Held, C. Benz, M. Baldwin, 2008 .

Determining cysteine oxidation status using differential alkylation

B. Gibson, B. Schilling, C. Collins, 2004 .

Life span extension via eIF4G inhibition is mediated by posttranscriptional remodeling of stress response gene expression in C. elegans.

A. Hubbard, P. Kapahi, S. Melov, 2011, Cell metabolism.

Confident identification of 3-nitrotyrosine modifications in mass spectral data across multiple mass spectrometry platforms.

Jason M. Held, B. Gibson, B. Schilling, 2011, Journal of proteomics.

Analysis of peptides and proteins containing nitrotyrosine by matrix-assisted laser desorption/ionization mass spectrometry

B. Gibson, A. Sarver, M. D. Shetlar, 2001, Journal of the American Society for Mass Spectrometry.

Gadd45a Protein Promotes Skeletal Muscle Atrophy by Forming a Complex with the Protein Kinase MEKK4*♦

B. Gibson, Scott M. Ebert, C. Adams, 2016, The Journal of Biological Chemistry.

Lipooligosaccharide P(k) (Galalpha1-4Galbeta1-4Glc) epitope of moraxella catarrhalis is a factor in resistance to bactericidal activity mediated by normal human serum.

P. Densen, B. Gibson, M. Apicella, 2000, Infection and immunity.

Iron promotes protein insolubility and aging in C. elegans

Dylan J. Sorensen, P. Kapahi, J. Andersen, 2014, Aging.

Revision of the blocked N terminus of rat heart fatty acid-binding protein by liquid secondary ion mass spectrometry.

A. Burlingame, B. Gibson, W. Aberth, 1988, The Journal of biological chemistry.

The cDNA sequence coding for prepro-PGS (prepro-magainins) and aspects of the processing of this prepro-polypeptide.

C. H. Moore, B. Gibson, M. Giovannini, 1988, The Journal of biological chemistry.

Levitide, a neurohormone-like peptide from the skin of Xenopus laevis. Peptide and peptide precursor cDNA sequences.

C. H. Moore, B. Gibson, M. Giovannini, 1988, The Journal of biological chemistry.

Identification of the C-terminus of rabbit skeletal muscle glycogen synthase.

P. Cohen, B. Gibson, D. Williams, 1986, Biochemical and biophysical research communications.

Simultaneous Quantification of the Acetylome and Succinylome by ‘One‐Pot’ Affinity Enrichment

B. Gibson, J. Meyer, B. Schilling, 2018, Proteomics.

SIRT1 deacetylates RORγt and enhances Th17 cell generation

B. Gibson, C. Xiao, J. Ryu, 2015, The Journal of experimental medicine.

Critical Role of Acetylation in Tau-Mediated Neurodegeneration and Cognitive Deficits

N. Krogan, E. Masliah, L. Ellerby, 2015, Nature Medicine.

JNK modifies neuronal metabolism to promote proteostasis and longevity

S. Ghaemmaghami, A. Ramanathan, G. Juhász, 2019, Aging cell.

RPL 24 : a potential therapeutic target whose depletion or acetylation inhibits polysome assembly and cancer cell growth

Jason M. Held, C. Benz, C. Yau, 2014 .

Novel Pathways Associated with Quinone-Induced Stress in Breast Cancer Cells

C. Benz, C. Yau, M. Baldwin, 2006, Drug metabolism reviews.

Functional proteomics: examining the effects of hypoxia on the cytotrophoblast protein repertoire.

A. Burlingame, B. Gibson, S. Fisher, 2001, Biochemistry.

Bombinin-like peptides with antimicrobial activity from skin secretions of the Asian toad, Bombina orientalis.

B. Gibson, E. Spindel, R. Mandrell, 1991, The Journal of biological chemistry.

Biosynthesis and degradation of peptides derived from Xenopus laevis prohormones.

B. Gibson, M. Giovannini, D. Williams, 1987, The Biochemical journal.

Biochemical and Functional Characterization of Membrane Blebs Purified from Neisseria meningitidis Serogroup B*

B. Gibson, J. Weiss, A. Teghanemt, 2005, Journal of Biological Chemistry.

SIRT3 and SIRT5 Regulate the Enzyme Activity and Cardiolipin Binding of Very Long-Chain Acyl-CoA Dehydrogenase

Matthew J. Rardin, B. Gibson, E. Verdin, 2015, PloS one.

14 – SEQUENCE DETERMINATION OF N-TERMINALLY BLOCKED AND INTERNAL PEPTIDES AT THE PICOMOLE LEVEL BY TANDEM MASS SPECTROMETRY WITH ARRAY DETECTION

B. Gibson, Zhonghua Yu, F. C. Walls, 1989 .

Characterization of exochelins of Mycobacterium avium: evidence for saturated and unsaturated and for acid and ester forms

B. Gibson, M. Horwitz, J. Gobin, 1996, Journal of bacteriology.

The Determination of Phosphorylation Sites in Peptides and Proteins by Mass Spectrometry

A. Burlingame, G. L. Kenyon, Dudley H. Williams, 1987 .

Characterization of lipid A acylation patterns in Francisella tularensis, Francisella novicida, and Francisella philomiragia using multiple-stage mass spectrometry and matrix-assisted laser desorption/ionization on an intermediate vacuum source linear ion trap.

B. Gibson, B. Schilling, N. Phillips, 2007, Analytical chemistry.

Novel Modification of Lipid A of Francisella tularensis

B. Gibson, B. Schilling, N. Phillips, 2004, Infection and Immunity.

Primary structure of macromomycin, an antitumor antibiotic protein.

S. Carr, W. Herlihy, K. Biemann, 1983, The Journal of biological chemistry.

Mutation of the htrB Locus of Haemophilus influenzae Nontypable Strain 2019 Is Associated with Modifications of Lipid A and Phosphorylation of the Lipo-oligosaccharide (*)

B. Gibson, M. Apicella, M. Sunshine, 1995, The Journal of Biological Chemistry.

Sirtuin 3 (SIRT3) Protein Regulates Long-chain Acyl-CoA Dehydrogenase by Deacetylating Conserved Lysines Near the Active Site

Matthew J. Rardin, B. Gibson, E. Verdin, 2013, The Journal of Biological Chemistry.

Stable isotope metabolic labeling of Neisseria meningitidis lipooligosaccharide

B. Gibson, Deborah M. B. Post, J. Weiss, 2006, Journal of endotoxin research.

The msbB Mutant of Neisseria meningitidis Strain NMB Has a Defect in Lipooligosaccharide Assembly and Transport to the Outer Membrane

B. Gibson, N. Phillips, M. Apicella, 2003, Infection and Immunity.

Intracellular Survival of Neisseria gonorrhoeae in Male Urethral Epithelial Cells: Importance of a Hexaacyl Lipid A

B. Gibson, N. Phillips, M. Apicella, 2002, Infection and Immunity.

Protein acetylation dynamics in response to carbon overflow in Escherichia coli

Dylan J. Sorensen, B. Gibson, A. Wolfe, 2015, Molecular microbiology.

Identification of a Novel Sialic Acid Transporter in Haemophilus ducreyi

B. Gibson, R. Munson, Deborah M. B. Post, 2005, Infection and Immunity.

Primary sequence characterization of catestatin intermediates and peptides defines proteolytic cleavage sites utilized for converting chromogranin a into active catestatin secreted from neuroendocrine chromaffin cells.

D. O'Connor, William Arbuthnot Sir Lane, B. Gibson, 2003, Biochemistry.

Cloning and Characterization of the Lipooligosaccharide Galactosyltransferase II Gene of Haemophilus ducreyi

B. Gibson, R. Munson, B. Schilling, 2000 .

Novel peptide fragments originating from PGLa and the caerulein and xenopsin precursors from Xenopus laevis.

B. Gibson, D. Williams, J. Maggio, 1986, The Journal of biological chemistry.

Partial acetylation of lysine residues improves intraprotein cross-linking.

Malin M. Young, I. Kuntz, B. Gibson, 2008, Analytical chemistry.

Identification of LpxL, a Late Acyltransferase of Francisella tularensis

B. Gibson, B. Schilling, M. Apicella, 2007, Infection and Immunity.

Utilizing the O-antigen lipopolysaccharide biosynthesis pathway in Escherichia coli to interrogate the substrate specificities of exogenous glycosyltransferase genes in a combinatorial approach.

F. Szoka, B. Gibson, M. Apicella, 2010, Glycobiology.

Aspects of the production of FAB and SIMS mass spectra

Dudley H. Williams, B. Gibson, S. Naylor, 1987 .

Calpain-1 Cleaves and Activates Caspase-7*

L. Ellerby, B. Gibson, Sylvia F. Chen, 2009, The Journal of Biological Chemistry.

The lbgAB Gene Cluster of Haemophilus ducreyi Encodes a β-1,4-Galactosyltransferase and an α-1,6-dd-Heptosyltransferase Involved in Lipooligosaccharide Biosynthesis

B. Gibson, R. Munson, E. Hansen, 2002, Infection and Immunity.

A mass spectrometric assay for novel peptides: Application to Xenopus laevis skin secretions

Dudley H. Williams, B. Gibson, L. Poulter, 1985, Peptides.

14 – Synthesis and Mass Spectrometry of Phosphotyrosine-Containing Peptides

G. L. Kenyon, B. Gibson, W. Hines, 1990 .

Biosynthesis of sialylated lipooligosaccharides in Haemophilus ducreyi is dependent on exogenous sialic acid and not mannosamine. Incorporation studies using N-acylmannosamine analogues, N-glycolylneuraminic acid, and 13C-labeled N-acetylneuraminic acid.

C. Bertozzi, B. Gibson, J. Leary, 2001, Biochemistry.

Characterization of the N-Acetyl-5-neuraminic Acid-binding Site of the Extracytoplasmic Solute Receptor (SiaP) of Nontypeable Haemophilus influenzae Strain 2019*

J. Houtman, B. Gibson, N. Coussens, 2008, Journal of Biological Chemistry.

Platform-independent and Label-free Quantitation of Proteomic Data Using MS1 Extracted Ion Chromatograms in Skyline

Michael J. MacCoss, Birgit Schilling, Matthew J. Rardin, 2012, Molecular & Cellular Proteomics.

DAF‐12‐dependent rescue of dauer formation in Caenorhabditis elegans by (25S)‐cholestenoic acid

Jason M. Held, Alfred L. Fisher, B. Gibson, 2006, Aging cell.

An approach towards the complete FAB analysis of enzymic digests of peptides and proteins

Stephen Naylor, Dudley H. Williams, B. Gibson, 1986 .

RPL24: a potential therapeutic target whose depletion or acetylation inhibits polysome assembly and cancer cell growth

Jason M. Held, C. Benz, C. Yau, 2014, Oncotarget.

Covalent modification of lys19 in the ctp binding site of cytidine 5′‐monophosphate n‐acetylneuraminic acid synthetase

B. Gibson, W. Vann, M. Tullius, 2008, Protein science : a publication of the Protein Society.

Proteomic analysis of plasma membrane and secretory vesicles from human neutrophils

K. Campbell, B. Gibson, M. Islam, 2007, Proteome Science.

Virus of avian myeloblastosis. XXII. Influence of folic acid and other factors on growth of myeloblasts and virus synthesis in tissue culture.

B. Gibson, G. Beaudreau, D. Beard, 1962, Journal of the National Cancer Institute.

Purification and structure of the host-specific toxin from Helminthosporium carbonum race 1.

B. Gibson, E. Earle, J. Walton, 1982, Biochemical and biophysical research communications.

Vitamin K3 (Menadione)-Induced Oncosis Associated with Keratin 8 Phosphorylation and Histone H3 Arylation

Jason M. Held, C. Benz, M. Baldwin, 2005, Molecular Pharmacology.

Iron acquisition by Mycobacterium tuberculosis: isolation and characterization of a family of iron-binding exochelins.

C. H. Moore, B. Gibson, M. Horwitz, 1995, Proceedings of the National Academy of Sciences of the United States of America.

N-acylethanolamine signaling mediates the effect of diet on lifespan in C. elegans

Jason M. Held, B. Gibson, G. Lithgow, 2011, Nature.

Sweetening the pot: adding glycosylation to the biomarker discovery equation.

Susan J Fisher, Bradford W Gibson, N Leigh Anderson, 2010, Clinical chemistry.

O-antigen and Core Carbohydrate of Vibrio fischeri Lipopolysaccharide

E. Ruby, Liping Yu, B. Gibson, 2012, The Journal of Biological Chemistry.

Primary structure of the Streptomyces enzyme endo-beta-N-acetylglucosaminidase H.

K. Biemann, G. Maley, F. Maley, 1984, The Journal of biological chemistry.

Purification, Cloning, and Expression of a Cytidine 5′-Monophosphate N-Acetylneuraminic Acid Synthetase from Haemophilus ducreyi*

B. Gibson, R. Munson, M. Tullius, 1996, The Journal of Biological Chemistry.

Francisella tularensis Schu S4 Lipopolysaccharide Core Sugar and O-Antigen Mutants Are Attenuated in a Mouse Model of Tularemia

B. Gibson, D. Meyerholz, M. Apicella, 2014, Infection and Immunity.

SIRT5 regulates the mitochondrial lysine succinylome and metabolic networks.

Matthew J. Rardin, Eric Verdin, Bradford W. Gibson, 2013, Cell metabolism.

Lectin chromatography/mass spectrometry discovery workflow identifies putative biomarkers of aggressive breast cancers.

Michael P. Cusack, Dylan J. Sorensen, Jason M. Held, 2012, Journal of proteome research.

SIRT5 Regulates both Cytosolic and Mitochondrial Protein Malonylation with Glycolysis as a Major Target.

Matthew J. Rardin, Eric Verdin, Bradford W Gibson, 2015, Molecular cell.

The human mitochondrial proteome: oxidative stress, protein modifications and oxidative phosphorylation.

Bradford W Gibson, B. Gibson, 2005, The international journal of biochemistry & cell biology.

Two-dimensional electrophoresis and mass spectrometric identification of mitochondrial proteins from an SH-SY5Y neuroblastoma cell line.

B. Gibson, Charles Anderson, A. Carroll, 2001, Mitochondrion.

Rapid Purification and Mass Spectrometric Characterization of Mitochondrial NADH Dehydrogenase (Complex I) from Rodent Brain and a Dopaminergic Neuronal Cell Line*S

Michael P. Cusack, K. Prasad, J. Andersen, 2005, Molecular & Cellular Proteomics.

An alternative strategy to determine the mitochondrial proteome using sucrose gradient fractionation and 1D PAGE on highly purified human heart mitochondria.

Steven W. Taylor, B. Gibson, E. Fahy, 2002, Journal of proteome research.

SIRT1 deacetylates RORγt and enhances Th17 cell generation

Birgit Schilling, Eric Verdin, Bradford W. Gibson, 2015, The Journal of experimental medicine.

Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

Brett Larsen, Anne-Claude Gingras, Birgit Schilling, 2016, bioRxiv.

Phosphoprotein Secretome of Tumor Cells as a Source of Candidates for Breast Cancer Biomarkers in Plasma

Michael P. Cusack, C. Benz, B. Gibson, 2014, Molecular & Cellular Proteomics.

Gastrin-releasing peptide (GRP) is not mammalian bombesin. Identification and molecular cloning of a true amphibian GRP distinct from amphibian bombesin in Bombina orientalis.

B. Gibson, E. Spindel, S. Nagalla, 1992, The Journal of biological chemistry.

Identification of new modulators and protein alterations in non‐apoptotic programmed cell death

B. Gibson, D. Bredesen, B. Schilling, 2010, Journal of cellular biochemistry.

Cathepsin L in secretory vesicles functions as a prohormone-processing enzyme for production of the enkephalin peptide neurotransmitter

M. Bogyo, C. Peters, T. Reinheckel, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Adipose-specific deletion of TFAM increases mitochondrial oxidation and protects mice against obesity and insulin resistance.

Matthew J. Rardin, C. Kahn, B. Emanuelli, 2012, Cell metabolism.

Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry.

Birgit Schilling, Lisa J Zimmerman, Christopher R Kinsinger, 2010, Journal of proteome research.

Cytoplasmic methionyl-tRNA synthetase from Bakers' yeast. A monomer with a post-translationally modified N terminus.

K. Biemann, B. Gibson, F. Fasiolo, 1985, The Journal of biological chemistry.

Primary structure and subunit stoichiometry of F1-ATPase from bovine mitochondria.

J. Walker, M. Saraste, B. Gibson, 1985, Journal of molecular biology.

A novel serine phosphorylation site detected in the n-terminal domain of estrogen receptor isolated from human breast cancer cells

Jason M. Held, C. Benz, M. Baldwin, 2008, Journal of the American Society for Mass Spectrometry.

Performance Metrics for Liquid Chromatography-Tandem Mass Spectrometry Systems in Proteomics Analyses*

David L. Tabb, Daniel C. Liebler, Stephen E. Stein, 2009, Molecular & Cellular Proteomics.

Identification, Characterization and Immunogenicity of an O-Antigen Capsular Polysaccharide of Francisella tularensis

Kathryn Chaloner, Bradford W. Gibson, Thomas J. Inzana, 2010, PloS one.

Mass spectrometric characterization of a series of adenosylated peptides acting as bisubstrate analogs of protein kinases

G. L. Kenyon, B. Gibson, W. Hines, 1994, Journal of the American Society for Mass Spectrometry.

Characterization of Inner and Outer Membrane Proteins from Francisella tularensis Strains LVS and Schu S4 and Identification of Potential Subunit Vaccine Candidates

Alexandria K. D’Souza, B. Gibson, J. Harty, 2017, mBio.

The Mitochondrial Acylome Emerges: Proteomics, Regulation by Sirtuins, and Metabolic and Disease Implications.

B. Gibson, J. Meyer, E. Verdin, 2018, Cell metabolism.

A pilot proteomic study of amyloid precursor interactors in Alzheimer's disease

B. Gibson, D. Bredesen, C. Link, 2005, Annals of neurology.

Mitochondrial Oxidative Stress Causes Hyperphosphorylation of Tau

C. Masters, A. Hubbard, S. Melov, 2007, PloS one.

Proposed second class of Haemophilus ducreyi strains show altered protein and lipooligosaccharide profiles

B. Gibson, Deborah M. B. Post, Deborah M. B. Post, 2007, Proteomics.

Identification of Genes Involved in the Expression of Atypical Lipooligosaccharide Structures from a Second Class of Haemophilus ducreyi

B. Gibson, R. Munson, J. Bozue, 2006, Infection and Immunity.

Characterization of htrB and msbB Mutants of the Light Organ Symbiont Vibrio fischeri

E. Ruby, B. Gibson, E. Stabb, 2007, Applied and Environmental Microbiology.

Mass spectrometric analysis of rabbit and bovine trypsin-solubilized cytochrome b5

B. Gibson, A. Falick, J. Lipka, 1990, Journal of protein chemistry.

Small‐scale immunopurification of cytochrome c oxidase for a high‐throughput multiplexing analysis of enzyme activity and amount

B. Gibson, B. Schilling, J. Murray, 2007, Biotechnology and applied biochemistry.

Proteomic analysis of succinate dehydrogenase and ubiquinol-cytochrome c reductase (Complex II and III) isolated by immunoprecipitation from bovine and mouse heart mitochondria.

Michael P. Cusack, B. Gibson, B. Schilling, 2006, Biochimica et biophysica acta.

The primary structure of fatty-acid-binding protein from nurse shark liver. Structural and evolutionary relationship to the mammalian fatty-acid-binding protein family.

A. Burlingame, K. Medzihradszky, B. Gibson, 1992, European journal of biochemistry.

Proteomic analysis of age-dependent changes in protein solubility identifies genes that modulate lifespan

Bradford W Gibson, Sean D Mooney, Uday S. Evani, 2012, Aging cell.

Ubiquitin-specific Peptidase 9, X-linked (USP9X) Modulates Activity of Mammalian Target of Rapamycin (mTOR)*

R. E. Hughes, B. Gibson, Yu-ting Chen, 2012, The Journal of Biological Chemistry.

Evidence for isoaspartyl1 (deamidated) forms of mouse epidermal growth factor

B. Gibson, W. Aberth, M. Walker, 1987 .

Variation and quantification among a target set of phosphopeptides in human plasma by multiple reaction monitoring and SWATH‐MS2 data‐independent acquisition

Birgit Schilling, Michael P. Cusack, Jason M. Held, 2014, Electrophoresis.

Ligand Binding Promotes CDK-Dependent Phosphorylation of ER-Alpha on Hinge Serine 294 but Inhibits Ligand-Independent Phosphorylation of Serine 305

Jason M. Held, C. Benz, M. Baldwin, 2012, Molecular Cancer Research.

Preferentially increased nitration of alpha-synuclein at tyrosine-39 in a cellular oxidative model of Parkinson's disease.

Birgit Schilling, Jason M Held, Bradford W Gibson, 2009, Analytical chemistry.

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

Christoph H Borchers, Birgit Schilling, Michael P. Cusack, 2009, Nature Biotechnology.

Quantification of cysteine oxidation in human estrogen receptor by mass spectrometry.

C. Benz, M. Baldwin, G. Scott, 2007, Analytical chemistry.

Comparative analyses of proteins from Haemophilus influenzae biofilm and planktonic populations using metabolic labeling and mass spectrometry

Jason M. Held, B. Gibson, N. Phillips, 2014, BMC Microbiology.

Nontypeable Haemophilus influenzae Strain 2019 Produces a Biofilm Containing N-Acetylneuraminic Acid That May Mimic Sialylated O-Linked Glycans

B. Gibson, H. Watanabe, N. Phillips, 2004, Infection and Immunity.

High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry

Malin M. Young, I D Kuntz, M M Young, 2000, Proc. Natl. Acad. Sci. USA.

The Mycobacterium bovis Bacille Calmette-Guérin Phagosome Proteome*

B. Gibson, M. Horwitz, B. Schilling, 2009, Molecular & Cellular Proteomics.

Mass Spectrometric Identification of Novel Lysine Acetylation Sites in Huntingtin*

Jason M. Held, L. Ellerby, B. Gibson, 2011, Molecular & Cellular Proteomics.

Phosphospecific proteolysis for mapping sites of protein phosphorylation

Birgit Schilling, Bradford W Gibson, Kevan M Shokat, 2003, Nature Biotechnology.

Interlaboratory Study Characterizing a Yeast Performance Standard for Benchmarking LC-MS Platform Performance*

Birgit Schilling, Lisa J Zimmerman, Christopher R Kinsinger, 2009, Molecular & Cellular Proteomics.

Permethylation and tandem mass spectrometry of oligosaccharides having free hexosamine: analysis of the glycoinositol phospholipid anchor glycan from the scrapie prion protein.

S. Prusiner, A. Burlingame, M. Baldwin, 1990, Analytical biochemistry.

A lectin affinity workflow targeting glycosite-specific, cancer-related carbohydrate structures in trypsin-digested human plasma.

Dylan J. Sorensen, F. Regnier, B. Gibson, 2011, Analytical biochemistry.

Expanded coverage of the human heart mitochondrial proteome using multidimensional liquid chromatography coupled with tandem mass spectrometry.

Eoin Fahy, Bradford W Gibson, Steven W. Taylor, 2004, Journal of proteome research.

Identification of Fur, Aconitase, and Other Proteins Expressed by Mycobacterium tuberculosis under Conditions of Low and High Concentrations of Iron by Combined Two-Dimensional Gel Electrophoresis and Mass Spectrometry

B. Gibson, M. Horwitz, Diane K. Wong, 1999, Infection and Immunity.

Primary structure of histidine-tRNA synthetase and characterization of hisS transcripts.

K. Biemann, P. Schimmel, B. Gibson, 1985, The Journal of biological chemistry.

Tandem mass spectrometry of peptides with N-terminal glutamine studies on a prion protein peptide

S. Prusiner, A. Burlingame, M. Baldwin, 1990 .

Quantitative Mapping of Reversible Mitochondrial Complex I Cysteine Oxidation in a Parkinson Disease Mouse Model*

Jason M. Held, J. Andersen, B. Gibson, 2011, The Journal of Biological Chemistry.

Effluent analysis of wastewater generated in the manufacture of 2,4,6-trinitrotoluene. 1. Characterization study

B. Gibson, R. Keck, R. Spanggord, 1982 .

Biotinylated human beta-endorphins as probes for the opioid receptor.

W. Sadee, B. Gibson, G. Hochhaus, 1988, The Journal of biological chemistry.

Identification of a Novel Sialic Acid Transporter in Haemophilus ducreyi

B. Gibson, R. Munson, Deborah M. B. Post, 2005, Infection and Immunity.

Liquid secondary ion mass spectrometry of phosphorylated and sulfated peptides and proteins.

B. Gibson, P. Cohen, 1990, Methods in enzymology.

Inhibition of Lipid Signaling Enzyme Diacylglycerol Kinase ϵ Attenuates Mutant Huntingtin Toxicity*

Jason M. Held, L. Ellerby, J. Botas, 2012, The Journal of Biological Chemistry.

Construction and Characterization of Haemophilus ducreyi Lipooligosaccharide (LOS) Mutants Defective in Expression of Heptosyltransferase III and β1,4-Glucosyltransferase: Identification of LOS Glycoforms Containing Lactosamine Repeats

B. Gibson, R. Munson, M. Filiatrault, 2000, Infection and Immunity.

Comparative Analyses of the Lipooligosaccharides from Nontypeable Haemophilus influenzae and Haemophilus haemolyticus Show Differences in Sialic Acid and Phosphorylcholine Modifications

B. Gibson, R. Munson, M. Apicella, 2016, Infection and Immunity.

Quantification of Lysine Acetylation and Succinylation Stoichiometry in Proteins Using Mass Spectrometric Data-Independent Acquisitions (SWATH)

Matthew J. Rardin, Dylan J. Sorensen, Alexandria K. D’Souza, 2016, Journal of The American Society for Mass Spectrometry.

An acetylatable lysine controls CRP function in E. coli

B. Gibson, M. Cánovas, W. Anderson, 2018, Molecular microbiology.

The E. coli sirtuin CobB shows no preference for enzymatic and nonenzymatic lysine acetylation substrate sites

Dylan J. Sorensen, M. Scholle, B. Gibson, 2014, MicrobiologyOpen.

Design, Implementation and Multisite Evaluation of a System Suitability Protocol for the Quantitative Assessment of Instrument Performance in Liquid Chromatography-Multiple Reaction Monitoring-MS (LC-MRM-MS)*

Christoph H Borchers, Birgit Schilling, Michael P. Cusack, 2013, Molecular & Cellular Proteomics.

Targeted quantitation of acetylated lysine peptides by selected reaction monitoring mass spectrometry.

Matthew J. Rardin, Jason M. Held, B. Gibson, 2013, Methods in molecular biology.

A Lectin HPLC Method to Enrich Selectively-glycosylated Peptides from Complex Biological Samples

F. Regnier, B. Gibson, S. Fisher, 2009, Journal of visualized experiments : JoVE.

Targeted Quantitation of Site-Specific Cysteine Oxidation in Endogenous Proteins Using a Differential Alkylation and Multiple Reaction Monitoring Mass Spectrometry Approach

Jason M. Held, C. Benz, B. Gibson, 2010, Molecular & Cellular Proteomics.

Panorama: A Targeted Proteomics Knowledge Base

Brendan MacLean, Michael J. MacCoss, Birgit Schilling, 2014, Journal of proteome research.

Non‐typeable Haemophilus influenzae adhere to and invade human bronchial epithelial cells via an interaction of lipooligosaccharide with the PAF receptor

B. Gibson, A. Preston, J. Weiser, 2000, Molecular microbiology.

Mass Spectrometry as a Tool to Determine the Structures and Heterogeneity of Bacterial Lipooligosaccharides (LOS)

B. Gibson, N. Phillips, S. Auriola, 1996 .

Identification and Characterization of the N-Acetylglucosamine Glycosyltransferase Gene of Haemophilus ducreyi

B. Gibson, R. Munson, S. Sun, 2002, Infection and Immunity.

Neuropeptides, Free Radical Stress and Antioxidants in Models of Mg-Deficient Cardiomyopathy

B. Gibson, T. Phillips, W. Weglicki, 1997 .

Identification and characterization of AckA-dependent protein acetylation in Neisseria gonorrhoeae

Alexandria K. D’Souza, B. Gibson, B. Schilling, 2017, PloS one.

Proteomic Analysis of Neisseria gonorrhoeae Biofilms Shows Shift to Anaerobic Respiration and Changes in Nutrient Transport and Outermembrane Proteins

Christopher T. Steichen, B. Gibson, B. Schilling, 2012, PloS one.

The Lipid A from Vibrio fischeri Lipopolysaccharide AUNIQUESTRUCTUREBEARINGAPHOSPHOGLYCEROLMOIETY

B. Gibson, E. Stabb, N. Phillips, 2011 .

Tor1 regulates protein solubility in Saccharomyces cerevisiae

Matthew J. Rardin, Uday S. Evani, S. Mooney, 2012, Molecular biology of the cell.

Ubiquitin-specific peptidase 9, X-linked (USP9X) modulates activity of mammalian target of rapamycin (mTOR).

R. E. Hughes, B. Gibson, Yu-ting Chen, 2014, Journal of Biological Chemistry.

Mass spectrometric identification of a novel phosphorylation site in subunit NDUFA10 of bovine mitochondrial complex I

B. Gibson, B. Schilling, R. Aggeler, 2005, FEBS letters.

Integration-independent Transgenic Huntington Disease Fragment Mouse Models Reveal Distinct Phenotypes and Life Span in Vivo*

L. Ellerby, B. Gibson, B. Lager, 2015, The Journal of Biological Chemistry.

Novel Sialic Acid Transporter of Haemophilus influenzae

B. Gibson, M. Apicella, A. Zaleski, 2005, Infection and Immunity.

Wavelet-Based Peak Detection and a New Charge Inference Procedure for MS/MS Implemented in ProteoWizard’s msConvert

David L. Tabb, Birgit Schilling, Bradford W. Gibson, 2014, Journal of proteome research.

Vitamin D Promotes Protein Homeostasis and Longevity via the Stress Response Pathway Genes skn-1, ire-1, and xbp-1.

Dylan J. Sorensen, Rachel B. Brem, T. Oron, 2016, Cell reports.

Corrigendum: Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

Christoph H Borchers, Jing Li, Birgit Schilling, 2009, Nature Biotechnology.

PIQED: automated identification and quantification of protein modifications from DIA-MS data

Hanno Steen, Alexey I Nesvizhskii, Birgit Schilling, 2017, Nature Methods.

expression in rat skeletal muscles Muscle contractile activity regulates Sirt3 protein

Matthew J. Rardin, Alexander S. Banks, C. Kahn, 2015 .

Generation of High-Quality SWATH® Acquisition Data for Label-free Quantitative Proteomics Studies Using TripleTOF® Mass Spectrometers.

Birgit Schilling, Bradford W Gibson, Christie L Hunter, 2017, Methods in molecular biology.

The Lipid A from Vibrio fischeri Lipopolysaccharide

B. Gibson, E. Stabb, M. McFall-Ngai, 2011, The Journal of Biological Chemistry.

Relationship between UDP-Glucose 4-Epimerase Activity and Oligoglucose Glycoforms in Two Strains ofNeisseria meningitidis

B. Gibson, M. Apicella, A. Zaleski, 1999, Infection and Immunity.

Liquid secondary ionization mass spectrometric characterization of two synthetic phosphotyrosine containing peptides

A. Burlingame, G. L. Kenyon, B. Gibson, 1987 .

Regulation of sialic acid transport and catabolism in Haemophilus influenzae

B. Gibson, D. Armbruster, R. Munson, 2007, Molecular microbiology.

Morphine Impurity with Opioid Activity Is Identified as 10α-Hydroxymorphine

W. Sadee, B. Gibson, J. Lameh, 1990, Pharmaceutical Research.

Site-specific acylation changes in the lipid A of Escherichia coli lpxL mutants grown at high temperatures

B. Gibson, B. Schilling, M. Apicella, 2014, Innate immunity.

Primary structures of both subunits of Escherichia coli glycyl-tRNA synthetase.

K. Biemann, T. Webster, P. Schimmel, 1983, The Journal of biological chemistry.

Identiﬁcation of a 3-Deoxy- D - manno -Octulosonic Acid Biosynthetic Operon in Moraxella catarrhalis and Analysis of a KdsA-Deﬁcient Isogenic Mutant

B. Gibson, A. Campagnari, Nicole R. Luke, 2003 .

Cloning of cDNAs encoding amphibian bombesin: evidence for the relationship between bombesin and gastrin-releasing peptide.

B. Gibson, E. Spindel, J. Reeve, 1990, Proceedings of the National Academy of Sciences of the United States of America.

Proteome of Haemophilus ducreyi by 2-D SDS-PAGE and mass spectrometry: strain variation, virulence, and carbohydrate expression.

William C. Ray, B. Gibson, R. Munson, 2003, Journal of proteome research.

SIRT 1 deacetylates ROR t and enhances Th 17 cell generation

B. Gibson, C. Xiao, J. Ryu, 2015 .

Phosphospecific proteolysis for mapping sites of protein phosphorylation

Birgit Schilling, Bradford W Gibson, Kevan M Shokat, 2003, Nature Biotechnology.

Proteogenomics of synaptosomal mitochondrial oxidative stress.

A. Hubbard, S. Melov, B. Gibson, 2012, Free radical biology & medicine.

MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments*

Matthew J. Rardin, Dylan J. Sorensen, B. MacLean, 2015, Molecular & Cellular Proteomics.

Haemophilus influenzae Type b Strain A2 Has Multiple Sialyltransferases Involved in Lipooligosaccharide Sialylation*

B. Gibson, R. Munson, J. Bozue, 2002, The Journal of Biological Chemistry.

A mass spectrometric method for the identification of novel peptides in Xenopus laevis skin secretions.

B. Gibson, D. Williams, L. Poulter, 1986, Journal of natural products.

DIA-Pipe: Identification and Quantification of Post-Translational Modifications using exclusively Data-Independent Acquisition

Birgit Schilling, Bradford W. Gibson, Alexey I. Nesvizhskii, 2017 .

Lipophilic regulator of a developmental switch in Caenorhabditis elegans

Jason M. Held, Alfred L. Fisher, B. Gibson, 2004, Aging cell.

Identiﬁcation of LpxL, a Late Acyltransferase of Francisella tularensis (cid:1) †

B. Gibson, B. Schilling, M. Apicella, 2007 .

Francisella tularensis Schu S4 Lipopolysaccharide Core Sugar and O-Antigen Mutants Are Attenuated in a Mouse Model of Tularemia

B. Gibson, D. Meyerholz, M. Apicella, 2014, Infection and Immunity.

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

Michael P. Cusack, Susan E. Abbatiello, Jeffrey R. Whiteaker, 2009, Nature Biotechnology.

Calpain-1 Cleaves and Activates Caspase-7*

L. Ellerby, B. Gibson, Sylvia F. Chen, 2009, The Journal of Biological Chemistry.

Mass Spectrometric Identification of Novel Lysine Acetylation Sites in Huntingtin*

Jason M. Held, L. Ellerby, B. Gibson, 2011, Molecular & Cellular Proteomics.

SIRT5 regulates the mitochondrial lysine succinylome and metabolic networks.

Matthew J. Rardin, M. Jacobson, B. Gibson, 2013, Cell metabolism.

Integration-independent Transgenic Huntington Disease Fragment Mouse Models Reveal Distinct Phenotypes and Life Span in Vivo*

L. Ellerby, B. Gibson, B. Lager, 2015, The Journal of Biological Chemistry.

There Are Three Distinct Forms of Bombesin IDENTIFICATION OF [Leu 13 ]BOMBESIN, [Phe 13 ]BOMBESIN, AND [Ser 3 ,Arg 10 ,Phe 13 ]BOMBESIN IN THE FROG BOMBINA ORIENTALIS *

B. Gibson, A. Falick, E. Spindel, 1996 .

Role of lgtC in Resistance of Nontypeable Haemophilus influenzae Strain R2866 to Human Serum

Michael E. Watson, B. Gibson, A. Erwin, 2006, Infection and Immunity.

Vitamin K 3 ( Menadione )-Induced Oncosis Associated with Keratin 8 Phosphorylation and Histone H 3 Arylation

Jason M. Held, C. Benz, M. Baldwin, 2005 .

Characterization of htrB and msbB Mutants of the Light Organ Symbiont Vibrio fischeri

E. Ruby, B. Gibson, E. Stabb, 2007, Applied and Environmental Microbiology.

Pattern-based algorithm for peptide sequencing from tandem high energy collision-induced dissociation mass spectra

A. Burlingame, B. Gibson, W. Hines, 1992, Journal of the American Society for Mass Spectrometry.