P. Farabaugh

发表

Shifty Ciliates Frequent Programmed Translational Frameshifting in Euplotids

L. Klobutcher, P. Farabaugh, 2002, Cell.

How translational accuracy influences reading frame maintenance

P. Farabaugh, G. Björk, 1999, The EMBO journal.

P. Farabaugh, 1996, Annual review of genetics.

Implication of alternative splicing for expression of a variant NAD(P)H:quinone oxidoreductase-1 with a single nucleotide polymorphism at 465C>T.

P. Farabaugh, S. Pan, Yusheng Han, 2002, Pharmacogenetics.

Near-cognate peptidyl-tRNAs promote +1 programmed translational frameshifting in yeast.

P. Farabaugh, G Stahl, P J Farabaugh, 1999, Molecular cell.

Ribosome structure: revisiting the connection between translational accuracy and unconventional decoding

P. Farabaugh, Guillaume Stahl, Philip J Farabaugh, 2002, Trends in Biochemical Sciences.

Transfer RNA modifications that alter +1 frameshifting in general fail to affect -1 frameshifting.

P. Farabaugh, G. Björk, J. Urbonavičius, 2003, RNA.

Codon-specific effects of tRNA anticodon loop modifications on translational misreading errors in the yeast Saccharomyces cerevisiae

P. Farabaugh, Kartikeya Joshi, Monika J Bhatt, 2018, Nucleic acids research.

Three downstream sites repress transcription of a Ty2 retrotransposon in Saccharomyces cerevisiae

P. Farabaugh, S. Türkel, A. Vimaladithan, 1993, Molecular and cellular biology.

An mRNA sequence derived from the yeast EST3 gene stimulates programmed +1 translational frameshifting.

P. Farabaugh, Dwayne Taliaferro, 2007, RNA.

Molecular basis of base substitution hotspots in Escherichia coli

Philip J. Farabaugh, Walter Gilbert, W. Gilbert, 1978, Nature.

Programmed translational frameshifting

P. Farabaugh, 1996, Microbiological reviews.

Evolution of +1 Programmed Frameshifting Signals and Frameshift-Regulating tRNAs in the Order Saccharomycetales

P. Farabaugh, A. Raman, Haritha Vallabhaneni, 2006, Journal of Molecular Evolution.

Pulling the Ribosome out of Frame by (cid:49) 1 at a Programmed Frameshift Site by Cognate Binding of Aminoacyl-tRNA

P. Farabaugh, A. Vimaladithan, S. Pande, 1994 .

Interspersion of an unusual GCN4 activation site with a complex transcriptional repression site in Ty2 elements of Saccharomyces cerevisiae

P. Farabaugh, S. Türkel, 1993, Molecular and cellular biology.

ISOLATION OF A YEAST GENE (HIS4) BY TRANSFORMATION OF YEAST

G. Fink, P. Farabaugh, A. Hinnen, 1979 .

Enhancer and promoter elements from simian virus 40 and polyomavirus can substitute for an upstream activation sequence in Saccharomyces cerevisiae

G. Carmichael, P. Farabaugh, N. Axelrod, 1990, Molecular and cellular biology.

Enhancer and silencerlike sites within the transcribed portion of a Ty2 transposable element of Saccharomyces cerevisiae

P. Farabaugh, M. Belcourt, J. Clare, 1989, Molecular and cellular biology.

Lack of tRNA Modiﬁcation Isopentenyl-A37 Alters mRNA Decoding and Causes Metabolic Deﬁciencies in Fission Yeast

P. Farabaugh, T. Begley, V. Cherkasova, 2013 .

Mutations of ribosomal protein S5 suppress a defect in late-30S ribosomal subunit biogenesis caused by lack of the RbfA biogenesis factor

P. Farabaugh, Monika J Bhatt, Hasan Tükenmez, 2015, RNA.

Transposable elements (Ty) in yeast.

G. Fink, G. Roeder, P. Farabaugh, 1981, Cold Spring Harbor symposia on quantitative biology.

The upstream activation site of a Ty 2 element of yeast is necessary but not sufficient to promote maximal transcription of the element ( retrovirus-like transposable element / Saccharomyces cerevisiae / p-galactosidase gene fusions / Sl endonuclease mapping )

P. Farabaugh, J. Clare, X. Liao, 2022 .

Nucleotide sequence of a yeast Ty 4 mechanism of gene expression (DNA sequencing/protein homology/SI nuclease mapping/i-galactow

P. Farabaugh, J. Clare, 2016 .

The nucleotide sequence of the HIS4 region of yeast.

G. Fink, P. Farabaugh, T. Donahue, 1982, Gene.

The origins of gene instability in yeast.

G. Fink, G. Roeder, P. Farabaugh, 1980, Science.

Oncogenic role of DDX3 in breast cancer biogenesis

F. Vesuna, V. Raman, P. Farabaugh, 2008, Oncogene.

Sequence of the lacI gene

P. Farabaugh, 1978, Nature.

Nonsense-mediated decay mutants do not affect programmed -1 frameshifting.

O. Namy, J. Rousset, P. Farabaugh, 2000, RNA.

Metabolic Deficiencies in Fission Yeast Alters mRNA Decoding and Causes Lack of tRNA Modification Isopentenyl-A37

P. Farabaugh, V. Cherkasova, J. Iben, 2014 .

Lack of tRNA Modification Isopentenyl-A37 Alters mRNA Decoding and Causes Metabolic Deficiencies in Fission Yeast

Thomas J. Begley, P. Farabaugh, T. Begley, 2013, Molecular and Cellular Biology.

New Ways of Initiating Translation in Eukaryotes?

M. Hentze, R. Jackson, O. Elroy-Stein, 2001, Molecular and Cellular Biology.

Nucleotide sequence of a yeast Ty element: evidence for an unusual mechanism of gene expression.

P. Farabaugh, J. Clare, 1985, Proceedings of the National Academy of Sciences of the United States of America.

Translational Accuracy during Exponential, Postdiauxic, and Stationary Growth Phases in Saccharomyces cerevisiae

P. Farabaugh, Lifeng Chen, G. Stahl, 2004, Eukaryotic Cell.

Programmed +1 translational frameshifting in the yeast Saccharomyces cerevisiae results from disruption of translational error correction.

P. Farabaugh, A. Raman, G. Stahl, 2001, Cold Spring Harbor symposia on quantitative biology.

Translational frameshifting: implications for the mechanism of translational frame maintenance.

P. Farabaugh, 2000, Progress in nucleic acid research and molecular biology.

Programmed +1 Frameshifting

P. Farabaugh, 1997 .

A novel programed frameshift expresses the POL3 gene of retrotransposon Ty3 of yeast: Frameshifting without tRNA slippage

P. Farabaugh, Hong Zhao, A. Vimaladithan, 1993, Cell.

The problem of genetic code misreading during protein synthesis

P. Farabaugh, Kartikeya Joshi, Ling Cao, 2019, Yeast.

Glucose signalling pathway controls the programmed ribosomal frameshift efficiency in retroviral‐like element Ty3 in Saccharomyces cerevisiae

P. Farabaugh, S. Türkel, Güliz Kaplan, 2011, Yeast.

Programmed Frameshifting in Budding Yeast

P. Farabaugh, 2010 .

Translational Control and Fidelity

P. Farabaugh, 2009 .

Saturation mutagenesis of a +1 programmed frameshift-inducing mRNA sequence derived from a yeast retrotransposon.

P. Farabaugh, A. Raman, Carla Guarraia, 2007, RNA.

Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site

Philip J. Farabaugh, P. Farabaugh, M. Belcourt, 1990, Cell.

The upstream activation site of a Ty2 element of yeast is necessary but not sufficient to promote maximal transcription of the element.

P. Farabaugh, J. Clare, X. Liao, 1987, Proceedings of the National Academy of Sciences of the United States of America.

Ribosomal protein and biogenesis factors affect multiple steps during movement of the Saccharomyces cerevisiae Ty1 retrotransposon

D. Garfinkel, P. Farabaugh, H. Ahn, 2015, Mobile DNA.

BUD22 Affects Ty1 Retrotransposition and Ribosome Biogenesis in Saccharomyces cerevisiae

D. Garfinkel, P. Farabaugh, K. Nyswaner, 2010, Genetics.

A rare tRNA-Arg(CCU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae.

Y. Nakamura, J. Boeke, D. Garfinkel, 1993, Genetics.

Efficient translational frameshifting occurs within a conserved sequence of the overlap between the two genes of a yeast Ty1 transposon.

P. Farabaugh, M. Belcourt, J. Clare, 1988, Proceedings of the National Academy of Sciences of the United States of America.

Genetic studies of the lac repressor. VII. On the molecular nature of spontaneous hotspots in the lacI gene of Escherichia coli.

J. Miller, Jeffrey H. Miller, P. Farabaugh, 1978, Journal of molecular biology.

Translational suppressors and antisuppressors alter the efficiency of the Ty1 programmed translational frameshift.

P. Farabaugh, Y. Chernoff, C. Burck, 1999, RNA.

of the Ty 1 programmed translational frameshift Translational suppressors and antisuppressors alter the efficiency service

P. Farabaugh, Y. Chernoff, C. Burck, 1999 .

Programmed −1 Frameshift Sites in Prokaryotes

P. Farabaugh, 1997 .

Programmed −1 Frameshifting in Eukaryotes

P. Farabaugh, 1997 .

Programmed Alternative Reading of the Genetic Code

Philip J. Farabaugh, P. Farabaugh, 1997, Springer US.

Special peptidyl-tRNA molecules can promote translational frameshifting without slippage

P. Farabaugh, A. Vimaladithan, Arunachalam Vimaladithanandphilipj . Farabaugh, 1994, Molecular and cellular biology.

Programmed Readthrough of Translational Termination Codons

P. Farabaugh, 1997 .

Three genes are required for trans-activation of Ty transcription in yeast.

F. Winston, P. Farabaugh, J. Clare, 1987, Genetics.

A new model for phenotypic suppression of frameshift mutations by mutant tRNAs.

P. Farabaugh, G. Björk, T. Hagervall, 1998, Molecular cell.

Correlation of nonsense sites in the lacI gene with specific codons in the nucleotide sequence

Philip J. Farabaugh, Jeffrey H. Miller, P. Farabaugh, 1978, Nature.

Insertion of the eukaryotic transposable element Ty1 creates a 5-base pair duplication

G. Fink, P. Farabaugh, 1980, Nature.

Post-transcriptional Regulation of Transposition by Ty Retrotransposons of Saccharomyces cerevisiae(*)

P. Farabaugh, 1995, The Journal of Biological Chemistry.

EMBO MEMBER'S REVIEW How translational accuracy influences reading frame maintenance

P. Farabaugh, G. Björk, 1999 .

Pulling the ribosome out of frame by +1 at a programmed frameshift site by cognate binding of aminoacyl-tRNA

P. Farabaugh, A. Vimaladithan, H. Zhao, 1995, Molecular and cellular biology.

The frequency of translational misreading errors in E. coli is largely determined by tRNA competition.

P. Farabaugh, Emily B Kramer, Philip J Farabaugh, 2006, RNA.

A comprehensive analysis of translational missense errors in the yeast Saccharomyces cerevisiae.

P. Farabaugh, Haritha Vallabhaneni, Emily B Kramer, 2010, RNA.

Protein mistranslation: friend or foe?

Manuel A. S. Santos, P. Farabaugh, B. Javid, 2014, Trends in biochemical sciences.

Distinct Paths To Stop Codon Reassignment by the Variant-Code Organisms Tetrahymena and Euplotes

L. Klobutcher, P. Farabaugh, D. Bedwell, 2006, Molecular and Cellular Biology.

Programmed Alternative Decoding as Programmed Translational Errors

Philip J. Farabaugh, P. Farabaugh, 1997 .

Alternative readings of the genetic code

P. Farabaugh, 1993, Cell.

Effects of tRNA modification on translational accuracy depend on intrinsic codon–anticodon strength

P. Farabaugh, Kartikeya Joshi, Monika J Bhatt, 2015, Nucleic acids research.

Suppressible four-base glycine and proline codons in yeast.

G. Fink, P. Farabaugh, T. Donahue, 1981, Science.

Studies of translational misreading in vivo show that the ribosome very efficiently discriminates against most potential errors

P. Farabaugh, Nabanita Nag, Philip J Farabaugh, 2014, RNA.

Programmed +1 frameshifting stimulated by complementarity between a downstream mRNA sequence and an error-correcting region of rRNA.

P. Farabaugh, G Stahl, P J Farabaugh, 2001, RNA.

25 Programmed Translational Frameshifting, Hopping, and Readthrough of Termination Codons

Philip J. Farabaugh, Qiang Qian, P. Farabaugh, 2000 .

The Translational Machinery

P. Farabaugh, 1997 .

Connection between stop codon reassignment and frequent use of shifty stop frameshifting.

P. Farabaugh, D. Bedwell, Haritha Vallabhaneni, 2009, RNA.

Interspersion ofan Unusual GCN4 Activation Sitewitha ComplexTranscriptional Repression SiteinTy2Elements of Saccharomyces cerevisiae

P. Farabaugh, 1993 .

Erratum for Lamichhane et al., Lack of tRNA Modification Isopentenyl-A37 Alters mRNA Decoding and Causes Metabolic Deficiencies in Fission Yeast

P. Farabaugh, T. Begley, V. Cherkasova, 2015, Molecular and Cellular Biology.

Errors During Elongation Can Cause Translational Frameshifting

P. Farabaugh, 1997 .

Accuracy modulating mutations of the ribosomal protein S4-S5 interface do not necessarily destabilize the rps4-rps5 protein-protein interaction.

P. Farabaugh, Haritha Vallabhaneni, 2009, RNA.

GCR1‐Dependent Transcriptional Activation of Yeast Retrotransposon Ty2‐917

P. Farabaugh, S. Türkel, Sezai Türkel, 1997, Yeast.

Programmed translational frameshifting

P. Farabaugh, 1996, Microbiological reviews.

An mRNA sequence derived from a programmed frameshifting signal decreases codon discrimination during translation initiation.

P. Farabaugh, A. Raman, G. Stahl, 2006, RNA.

How translational accuracy influences reading frame maintenance

P. Farabaugh, G. Björk, 1999, The EMBO journal.

Effect of frameshift-inducing mutants of elongation factor 1alpha on programmed +1 frameshifting in yeast.

P. Farabaugh, A. Vimaladithan, 1998, RNA.

Programmed translational frameshifting

P. Farabaugh, 1996, Microbiological reviews.

Testing constraints on rRNA bases that make nonsequence-specific contacts with the codon-anticodon complex in the ribosomal A site.

P. Farabaugh, Dwayne Taliaferro, 2007, RNA.