N. Bordin

发表

CATH: increased structural coverage of functional space

Radka Svobodová Vareková, Su Datt Lam, Jonathan G. Lees, 2020, Nucleic Acids Res..

Contrastive learning on protein embeddings enlightens midnight zone

B. Rost, C. Orengo, I. Sillitoe, 2021, bioRxiv.

Clustering FunFams using sequence embeddings improves EC purity

B. Rost, C. Orengo, N. Bordin, 2021, bioRxiv.

Systematic modeling of SARS-CoV-2 protein structures

Bosco K. Ho, B. Rost, N. Bordin, 2020 .

Planctomycetes attached to algal surfaces: Insight into their genomes.

N. Bordin, D. Devos, O. Lage, 2017, Genomics.

SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals

Su Datt Lam, Jonathan G. Lees, Harry M. Scholes, 2020, Scientific Reports.

Pex24 and Pex32 tether peroxisomes to the ER for organelle biogenesis, positioning and segregation

Arjen M. Krikken, N. Bordin, D. Devos, 2020, bioRxiv.

Pex24 and Pex32 are required to tether peroxisomes to the ER for organelle biogenesis, positioning and segregation in yeast

Arjen M. Krikken, N. Bordin, D. Devos, 2020, Journal of Cell Science.

AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms

Su Datt Lam, B. Rost, C. Orengo, 2022, bioRxiv.

Novel machine learning approaches revolutionize protein knowledge

C. Orengo, N. Bordin, C. Rauer, 2022, Trends in biochemical sciences.

Biocontrol traits of Bacillus licheniformis GL174, a culturable endophyte of Vitis vinifera cv. Glera

G. Valle, N. Bordin, A. Squartini, 2018, BMC Microbiology.

Hansenula polymorpha Pex37 is a peroxisomal membrane protein required for organelle fission and segregation

Arjen M. Krikken, N. Bordin, D. Devos, 2019, The FEBS journal.

The opportunities and challenges posed by the new generation of deep learning-based protein structure predictors.

C. Orengo, S. Velankar, N. Bordin, 2023, Current opinion in structural biology.

Characterizing and explaining impact of disease-associated mutations in proteins without known structures or structural homologues

C. Orengo, S. Velankar, I. Sillitoe, 2021, bioRxiv.

CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models

B. Rost, C. Orengo, I. Sillitoe, 2022, bioRxiv.

Characterizing disease-associated human proteins without available protein structures or homologues

C. Orengo, S. Velankar, I. Sillitoe, 2021 .

Adair L. Borges, J. Banfield, N. Segata, 2021, iScience.

SARS‐CoV‐2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms

Bosco K. Ho, B. Rost, S. O’Donoghue, 2021, Molecular systems biology.

ICBdocker: a Docker image for proteome annotation and visualization

Damien Devos, Nicola Bordin, N. Bordin, 2018, Bioinform..

PVCbase: an integrated web resource for the PVC bacterial proteomes

Damien Devos, Nicola Bordin, Juan Carlos González-Sánchez, 2018, Database J. Biol. Databases Curation.

KinFams: De-Novo Classification of Protein Kinases Using CATH Functional Units

C. Orengo, I. Sillitoe, N. Bordin, 2023, Biomolecules.

Wide distribution of alternatively coded Lak megaphages in animal microbiomes

Adair L. Borges, J. Banfield, N. Segata, 2021, bioRxiv.

Streamlined use of protein structures in variant analysis

S. O’Donoghue, N. Bordin, M. Cowley, 2021 .

Broad functional profiling of fission yeast proteins using phenomics and machine learning

Harry M. Scholes, C. Orengo, J. Bähler, 2023, bioRxiv.

Biocontrol traits of Bacillus licheniformis GL174, a culturable endophyte of Vitis vinifera cv. Glera

G. Valle, N. Bordin, A. Squartini, 2018, BMC Microbiology.

SARS-CoV-2 structural coverage map reveals state changes that disrupt host immunity

Bosco K. Ho, B. Rost, S. O’Donoghue, 2020, bioRxiv.

Tracing Evolution Through Protein Structures: Nature Captured in a Few Thousand Folds

Jonathan G. Lees, C. Orengo, J. Lees, 2021, Frontiers in Molecular Biosciences.

CATH 2024: CATH-AlphaFlow Doubles the Number of Structures in CATH and Reveals Nearly 200 New Folds.

N. Bordin, Clemens Rauer, Rachel Alcraft, 2024, Journal of molecular biology.

Broad functional profiling of fission yeast proteins using phenomics and machine learning

Jonathan G. Lees, Harry M. Scholes, Shaimaa A. Hassan, 2023, bioRxiv.

Predicting human and viral protein variants affecting COVID-19 susceptibility and repurposing therapeutics

Su Datt Lam, I. Sillitoe, N. Bordin, 2023, bioRxiv.