C. Vieira

发表

Drosophila Genes That Affect Meiosis Duration Are among the Meiosis Related Genes That Are More Often Found Duplicated

J. Vieira, M. Reis, S. Sousa-Guimarães, 2011, PloS one.

Infra- and Transspecific Clues to Understanding the Dynamics of Transposable Elements

C. Vieira, E. Lerat, Marie Fablet, 2009 .

A Transposon Story: From TE Content to TE Dynamic Invasion of Drosophila Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore

C. Vieira, P. Veber, S. Chambeyron, 2020, Cells.

Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains

C. Vieira, Marie Fablet, N. Burlet, 2019, G3: Genes, Genomes, Genetics.

A comparative analysis of the amounts and dynamics of transposable elements in natural populations of Drosophila melanogaster and Drosophila simulans.

C. Vieira, C. Biémont, E. Lerat, 2012, Journal of environmental radioactivity.

Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes.

Emmanuelle Lerat, Christian Biémont, C. Vieira, 2011, Gene.

Dynamics and function of intron sequences of the wingless gene during the evolution of the Drosophila genus

J. Costas, J. Vieira, C. Vieira, 2004, Evolution & development.

Genetic exchange in eukaryotes through horizontal transfer: connected by the mobilome

C. Vieira, E. Loreto, G. Wallau, 2018, Mobile DNA.

Genetics: Junk DNA as an evolutionary force

Christian Biémont, C. Vieira, C. Biémont, 2006, Nature.

On the Importance to Acknowledge Transposable Elements in Epigenomic Analyses

Cristian Chaparro, Josep Casacuberta, Emmanuelle Lerat, 2019, Genes.

Wake up of transposable elements following Drosophila simulans worldwide colonization.

C. Vieira, C. Biémont, S. Dumont, 1999, Molecular biology and evolution.

Genomic characterization of a repetitive motif strongly associated with developmental genes in Drosophila

J. Costas, J. Vieira, C. Vieira, 2003, BMC Genomics.

Specific Activation of an I-Like Element in Drosophila Interspecific Hybrids

C. Vieira, E. Lerat, C. M. Carareto, 2014, Genome biology and evolution.

Transposable element distribution in Drosophila.

C. Hoogland, C. Vieira, C. Biémont, 1997, Genetics.

Convergent Evolution at the Gametophytic Self-Incompatibility System in Malus and Prunus

Nuno A. Fonseca, J. Vieira, C. Vieira, 2015, PloS one.

Genomic analysis of European Drosophila populations reveals major longitudinal structure, continent-wide selection, and unknown DNA viruses

Maite G. Barrón, J. Parsch, B. Zwaan, 2018, bioRxiv.

High-Throughput Sequencing of Transposable Elements Insertions 1 Provides Evidence for Adaptive Evolution of the Invasive Asian Tiger 2 Mosquito Towards Temperate Environments 3

C. Vieira, M. Boulesteix, Claire Valiente Moro, 2016 .

Population genetics of the Asian tiger mosquito Aedes albopictus, an invasive vector of human diseases

C. Vieira, M. Boulesteix, C. Goubert, 2016, Heredity.

No evidence for Fabaceae Gametophytic self-incompatibility being determined by Rosaceae, Solanaceae, and Plantaginaceae S-RNase lineage genes

J. Vieira, C. Vieira, Bruno Aguiar, 2015, BMC Plant Biology.

De novo assembly and annotation of the Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE from raw genomic reads and comparative analysis with the yellow fever

C. Vieira, M. Boulesteix, C. Goubert, 2015 .

Patterns of evolution at the gametophytic self-incompatibility Sorbus aucuparia (Pyrinae) S pollen genes support the non-self recognition by multiple factors model

Nuno A. Fonseca, David Reboiro-Jato, M. Reboiro-Jato, 2013, Journal of experimental botany.

The evolution of vitamin C biosynthesis and transport in animals

J. Vieira, C. Vieira, Pedro Duque, 2022, BMC Ecology and Evolution.

Origin and Consequences of Chromosomal Inversions in the virilis Group of Drosophila

J. Vieira, M. Reis, C. Vieira, 2018, Genome biology and evolution.

Predicting Specificities Under the Non-self Gametophytic Self-Incompatibility Recognition Model

H. López-Fernández, M. Reboiro-Jato, J. Vieira, 2019, Front. Plant Sci..

Inferences on specificity recognition at the Malus×domestica gametophytic self-incompatibility system

Nuno A. Fonseca, J. Vieira, C. Vieira, 2018, Scientific Reports.

Predictive Models of within- and between-Species SARS-CoV-2 Transmissibility

J. Vieira, C. Vieira, R. Soares, 2022, Viruses.

Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses

Maite G. Barrón, J. Parsch, B. Zwaan, 2020, Molecular biology and evolution.

ADOPS - Automatic Detection Of Positively Selected Sites

Nuno A. Fonseca, David Reboiro-Jato, M. Reboiro-Jato, 2012, Journal of integrative bioinformatics.

Evolutionary Pathways of the tirant LTR Retrotransposon in the Drosophila melanogaster Subgroup of Species

C. Vieira, C. Biémont, Marie Fablet, 2007, Journal of Molecular Evolution.

The Drosophila melanogaster methuselah Gene: A Novel Gene with Ancient Functions

Nuno A. Fonseca, David Reboiro-Jato, M. Reboiro-Jato, 2013, PloS one.

The Drosophila melanogaster Muc68E Mucin Gene Influences Adult Size, Starvation Tolerance, and Cold Recovery

J. Vieira, M. Reis, C. Vieira, 2016, G3: Genes, Genomes, Genetics.

Drosophila americana as a Model Species for Comparative Studies on the Molecular Basis of Phenotypic Variation

Nuno A. Fonseca, C. Schlötterer, J. Vieira, 2013, Genome biology and evolution.

Genes Belonging to the Insulin and Ecdysone Signaling Pathways Can Contribute to Developmental Time, Lifespan and Abdominal Size Variation in Drosophila americana

J. Vieira, M. Reis, C. Vieira, 2014, PloS one.

Effects of Highly Conserved Major Histocompatibility Complex (MHC) Extended Haplotypes on Iron and Low CD8+ T Lymphocyte Phenotypes in HFE C282Y Homozygous Hemochromatosis Patients from Three Geographically Distant Areas

C. Vieira, J. Barton, B. M. da Silva, 2013, PloS one.

The number, age, sharing and relatedness of S-locus specificities in Prunus.

Nuno A. Fonseca, J. Vieira, C. Vieira, 2008, Genetics research.

Transposable Element Misregulation Is Linked to the Divergence between Parental piRNA Pathways in Drosophila Hybrids

C. Vieira, S. Chambeyron, B. Mugat, 2017, Genome biology and evolution.

Vertical inheritance and bursts of transposition have shaped the evolution of the BS non-LTR retrotransposon in Drosophila

C. Vieira, A. Granzotto, C. M. Carareto, 2011, Molecular Genetics and Genomics.

Phylum-wide analysis of genes/proteins related to the last steps of assembly and export of extracellular polymeric substances (EPS) in cyanobacteria

J. Vieira, C. Vieira, P. Tamagnini, 2015, Scientific Reports.

Discordant rates of chromosome evolution in the Drosophila virilis species group.

D. Hartl, J. Vieira, C. Vieira, 1997, Genetics.

High-Throughput Sequencing of Transposable Element Insertions Suggests Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environments

C. Vieira, M. Boulesteix, C. Valiente Moro, 2016, bioRxiv.

Genomic evidence for adaptive evolution of the invasive Asian tiger mosquito towards temperate environment

C. Vieira, M. Boulesteix, C. Valiente Moro, 2016 .

Protein evolution of ANTP and PRD homeobox genes

Nuno A. Fonseca, P. Holland, J. Vieira, 2008, BMC Evolutionary Biology.

Phenotypic and Transcriptomic Responses to Stress Differ According to Population Geography in an Invasive Species

C. Vieira, M. Ferrarini, Marie Fablet, 2020, bioRxiv.

Advances in Novel Animal Vitamin C Biosynthesis Pathways and the Role of Prokaryote-Based Inferences to Understand Their Origin

J. Vieira, C. Vieira, Pedro Duque, 2022, Genes.

SEDA: A Desktop Tool Suite for FASTA Files Processing

Florentino Fdez-Riverola, Jorge Vieira, Miguel Reboiro-Jato, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

The pegi3s Bioinformatics Docker Images Project

Pedro G. Ferreira, Hugo López-Fernández, Miguel Reboiro-Jato, 2021, PACBB.

Multiple independent L-gulonolactone oxidase (GULO) gene losses and vitamin C synthesis reacquisition events in non-Deuterostomian animal species

H. López-Fernández, M. Reboiro-Jato, J. Vieira, 2019, BMC Evolutionary Biology.

A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees

Florentino Fernández Riverola, Hugo López-Fernández, Jorge Vieira, 2018, PACBB.

Fruit fly identification, population dynamics and fruit damage during fruiting seasons of sweet oranges in Rusitu Valley, Zimbabwe

J. Vieira, C. Vieira, R. Musundire, 2019, Scientific Reports.

The discovery, distribution, and diversity of DNA viruses associated with Drosophila melanogaster in Europe

Gregory F. Albery, J. Parsch, V. Loeschcke, 2020, bioRxiv.

The heterochromatic copies of the LTR retrotransposons as a record of the genomic events that have shaped the Drosophila melanogaster genome.

C. Vieira, C. Biémont, N. Mugnier, 2008, Gene.

Deficiency mapping of quantitative trait loci affecting longevity in Drosophila melanogaster.

T. Mackay, C. Vieira, E. Pasyukova, 2000, Genetics.

Jumping genes and epigenetics: Towards new species.

C. Vieira, Rita Rebollo, B. Hubert, 2010, Gene.

Exposure to hycanthone alters chromatin structure around specific gene functions and specific repeats in Schistosoma mansoni

C. Vieira, C. Grunau, J. Boissier, 2014, Front. Genet..

the molecular basis of phenotypic variation

Nuno A. Fonseca, C. Schlötterer, J. Vieira, 2013 .

New regulatory regions of Drosophila 412 retrotransposable element generated by recombination.

C. Vieira, C. Biémont, N. Mugnier, 2005, Molecular biology and evolution.

Low rates of silent substitution in nuclear genes of two distantly related Scrophulariaceae (Antirrhinum and Verbascum).

D. Charlesworth, C. Vieira, 2001, Molecular biology and evolution.

Stress affects the epigenetic marks added by Bari-Jheh : a natural insertion associated with two adaptive phenotypes in Drosophila

C. Vieira, Josefa González, L. Guio, 2016 .

Comparative analysis of five immunity-related genes reveals different levels of adaptive evolution in the virilis and melanogaster groups of Drosophila

J. Vieira, M. Reis, C. Vieira, 2009, Heredity.

Is genome size influenced by colonization of new environments in dipteran species?

C. Vieira, C. Biémont, C. Nardon, 2005, Molecular ecology.

The evolution of retrotransposon regulatory regions and its consequences on the Drosophila melanogaster and Homo sapiens host genomes.

C. Vieira, C. Biémont, Marie Fablet, 2007, Gene.

The DAIBAM MITE element is involved in the origin of one fixed and two polymorphic Drosophila virilis phylad inversions

Nuno A. Fonseca, C. Schlötterer, J. Vieira, 2012, Fly.

A framework physical map of Drosophila virilis based on P1 clones: applications in genome evolution

D. Hartl, J. Vieira, C. Vieira, 1997, Chromosoma.

Genetic exchange in eukaryotes through horizontal transfer: connected by the mobilome

C. Vieira, E. Loreto, G. Wallau, 2018, Mobile DNA.

Bmc Evolutionary Biology the Evolutionary Dynamics of the Helena Retrotransposon Revealed by Sequenced Drosophila Genomes

Claudia M. A. Carareto, C. Vieira, E. Lerat, 2022 .

What transposable elements tell us about genome organization and evolution: the case of Drosophila

C. Vieira, C. Biémont, Cristina Vieira, 2005, Cytogenetic and Genome Research.

Transposable elements in Drosophila

C. Vieira, Marie Fablet, M. Boulesteix, 2020, Mobile DNA.

Title : The discovery , distribution and diversity of DNA viruses associated with Drosophila melanogaster in Europe Running title : DNA viruses of European Drosophila

Gregory F. Albery, J. Parsch, V. Loeschcke, 2021 .

Evolvability, epigenetics and transposable elements

C. Vieira, Marie Fablet, 2011, Biomolecular concepts.

An old bilbo-like non-LTR retroelement insertion provides insight into the relationship of species of the virilis group.

J. Vieira, M. Reis, C. Vieira, 2008, Gene.

Losing helena: The extinction of a drosophila line-like element

C. Vieira, C. Biémont, E. Lerat, 2008, BMC Genomics.

Genes Devoid of Full-Length Transposable Element Insertions are Involved in Development and in the Regulation of Transcription in Human and Closely Related Species

C. Vieira, E. Lerat, H. Mortada, 2010, Journal of Molecular Evolution.

A Genome-Wide Survey of Genetic Instability by Transposition in Drosophila Hybrids

C. Vieira, A. Fontdevila, M. G. García Guerreiro, 2014, PloS one.

Transposable Element Dynamics in Two Sibling Species: Drosophila Melanogaster and Drosophila Simulans

C. Vieira, C. Biémont, 2004, Genetica.

Evolution of the cycloidea gene family in Antirrhinum and Misopates.

D. Charlesworth, J. Vieira, C. Vieira, 1999, Molecular biology and evolution.

Inferences on the evolutionary history of the Drosophila americana polymorphic X/4 fusion from patterns of polymorphism at the X-linked paralytic and elav genes.

J. Vieira, C. Vieira, P. Coelho, 2003, Genetics.

Comparative polytene chromosome maps of D. montana and D. virilis

J. Vieira, C. Vieira, S. Päällysaho, 2007, Chromosoma.

The Evolutionary History of the Transposable Element Penelope in the Drosophila virilis Group of Species

J. Vieira, C. Vieira, R. Morales‐Hojas, 2006, Journal of Molecular Evolution.

tirant, a Newly Discovered Active Endogenous Retrovirus in Drosophila simulans

C. Vieira, B. Viginier, Marie Fablet, 2012, Journal of Virology.

Genomic regions harboring insecticide resistance-associated Cyp genes are enriched by transposable element fragments carrying putative transcription factor binding sites in two sibling Drosophila species.

C. Vieira, C. M. Carareto, E. H. Hernández, 2014, Gene.

Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila

E. Gilson, C. Vieira, E. Brasset, 2009, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

De Novo Assembly and Annotation of the Asian Tiger Mosquito (Aedes albopictus) Repeatome with dnaPipeTE from Raw Genomic Reads and Comparative Analysis with the Yellow Fever Mosquito (Aedes aegypti)

Laurent Modolo, Clément Goubert, C. Vieira, 2015, Genome biology and evolution.

The Prunus self-incompatibility locus (S locus) is seldom rearranged.

J. Vieira, C. Vieira, R. Tao, 2008, The Journal of heredity.

Evidence for rare recombination at the gametophytic self-incompatibility locus

D. Charlesworth, J. Vieira, C. Vieira, 2003, Heredity.

Variability patterns and positively selected sites at the gametophytic self-incompatibility pollen SFB gene in a wild self-incompatible Prunus spinosa (Rosaceae) population.

Jorge Vieira, Cristina P Vieira, J. Vieira, 2006, The New phytologist.

Factors contributing to the hybrid dysgenesis syndrome in Drosophila virilis.

D. Hartl, J. Vieira, C. Vieira, 1998, Genetical research.

A Quantitative, Genome-Wide Analysis in Drosophila Reveals Transposable Elements’ Influence on Gene Expression Is Species-Specific

C. Vieira, P. Veber, Marie Fablet, 2022, bioRxiv.

Identification of misexpressed genetic elements in hybrids between Drosophila-related species

C. Vieira, S. Chambeyron, B. Mugat, 2017, Scientific Reports.

Self and Nonself from a Genomic Perspective: Transposable Elements

C. Vieira, Marlène Roy, Marie Fablet, 2017 .

The Drosophila Su(var)3–7 Gene Is Required for Oogenesis and Female Fertility, Genetically Interacts with piwi and aubergine, but Impacts Only Weakly Transposon Silencing

C. Vieira, P. Spierer, D. E. Koryakov, 2014, PloS one.

Maternally deposited germline piRNAs silence the tirant retrotransposon in somatic cells

C. Vieira, S. Chambeyron, Marie Fablet, 2013, EMBO reports.

Ongoing loss of the tirant transposable element in natural populations of Drosophila simulans.

C. Vieira, C. Biémont, J. McDonald, 2006, Gene.

Molecular variation at the self-incompatibility locus in natural populations of the genera Antirrhinum and Misopates

D. Charlesworth, C. Vieira, 2002, Heredity.

Variable expression levels detected in the Drosophila effectors of piRNA biogenesis.

C. Vieira, Marie Fablet, Abdou Akkouche, 2014, Gene.

TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes

Laurent Modolo, Emmanuelle Lerat, Hélène Lopez-Maestre, 2016, Nucleic acids research.

Mycobacterium tuberculosis associated with severe tuberculosis evades cytosolic surveillance systems and modulates IL-1β production

J. Vieira, C. Vieira, A. Amorim, 2020, Nature Communications.

Inferences on specificity recognition at the Malus×domestica gametophytic self-incompatibility system

Nuno A. Fonseca, J. Vieira, C. Vieira, 2018, Scientific Reports.

No evidence for Fabaceae Gametophytic self-incompatibility being determined by Rosaceae, Solanaceae, and Plantaginaceae S-RNase lineage genes

J. Vieira, C. Vieira, Bruno Aguiar, 2015, BMC Plant Biology.

Didymozoids in Muscle of Atlantic Chub Mackerel (Scomber colias)

J. Vieira, C. Vieira, P. Tamagnini, 2019, Acta Parasitologica.

Evidence for introgression in differentiated North-American and Finnish Drosophila montana populations

J. Vieira, C. Vieira, S. Päällysaho, 2005, Genetica.

The genome of the cereal pest Sitophilus oryzae: a transposable element haven

A. Smit, A. Moya, R. Hubley, 2021 .

A Snapshot of Histone Modifications within Transposable Elements in Drosophila Wild Type Strains

E. Gilson, C. Vieira, M. Delattre, 2012, PloS one.

Biological invasion: The influence of the hidden side of the (epi)genome

C. Vieira, C. Ghalambor, S. Maury, 2019, Functional Ecology.

On the Identification of Clinically Relevant Bacterial Amino Acid Changes at the Whole Genome Level Using Auto-PSS-Genome

H. López-Fernández, M. Reboiro-Jato, J. Vieira, 2021, Interdisciplinary Sciences: Computational Life Sciences.

BDBM 1.0: A Desktop Application for Efficient Retrieval and Processing of High-Quality Sequence Data and Application to the Identification of the Putative Coffea S-Locus

Hugo López-Fernández, Florentino Fdez-Riverola, Miguel Reboiro-Jato, 2019, Interdisciplinary Sciences: Computational Life Sciences.

An attempt to select non-genetic variation in resistance to starvation and reduced chill coma recovery time in Drosophila melanogaster

H. Muller, C. Vieira, Marie Fablet, 2018, Journal of Experimental Biology.

The Worldwide Invasion of Drosophila suzukii Is Accompanied by a Large Increase of Transposable Element Load and a Small Number of Putatively Adaptive Insertions

C. Vieira, A. Estoup, M. Gautier, 2020, bioRxiv.

Genomic analysis of European Drosophila populations reveals major longitudinal structure, continent-wide selection, and unknown DNA viruses

Maite G. Barrón, J. Parsch, B. Zwaan, 2018, bioRxiv.

Identification of expressed transposable element insertions in the sequenced genome of Drosophila melanogaster.

C. Vieira, M. Sagot, C. Biémont, 2009, Gene.

Multiple loci linked to inversions are associated with eye size variation in species of the Drosophila virilis phylad

J. Vieira, M. Reis, C. Vieira, 2020, Scientific Reports.

The evolution of small gene clusters: evidence for an independent origin of the maltase gene cluster in Drosophila virilis and Drosophila melanogaster.

D. Hartl, J. Vieira, C. Vieira, 1997, Molecular biology and evolution.

Drosophila americana Diapausing Females Show Features Typical of Young Flies

J. Vieira, M. Reis, C. Vieira, 2015, PloS one.

Polymorphic microsatellites in Antirrhinum (Scrophulariaceae), a genus with low levels of nuclear sequence variability.

C. Schlötterer, C. Vieira, D. Zwettler, 2002, The Journal of heredity.

Population‐specific dynamics and selection patterns of transposable element insertions in European natural populations

A. Dufour, S. Guirao-Rico, C. Vieira, 2019, Molecular ecology.

Accumulation of Transposable Elements in the Heterochromatin and on the Y Chromosome of Drosophila simulans and Drosophila melanogaster

C. Vieira, A. Terrinoni, N. Junakovic, 1998, Journal of Molecular Evolution.

Drosophila Evolution over Space and Time (DEST): A New Population Genomics Resource

D. Petrov, J. Parsch, S. Schaeffer, 2021, Molecular biology and evolution.

Drosophila Evolution over Space and Time (DEST) - A New Population Genomics Resource

D. Petrov, J. Parsch, S. Schaeffer, 2021, bioRxiv.

Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster

C. Vieira, Josefa González, L. Guio, 2018, bioRxiv.

Inferring the evolutionary history of Drosophila americana and Drosophila novamexicana using a multilocus approach and the influence of chromosomal rearrangements in single gene analyses

J. Vieira, C. Vieira, R. Morales‐Hojas, 2008, Molecular ecology.

Genomic evidence for adaptive evolution of the invasive Asian tiger mosquito towards temperate environment

C. Vieira, M. Boulesteix, P. Mavingui, 2016 .

An S-RNase-Based Gametophytic Self-Incompatibility System Evolved Only Once in Eudicots

Nuno A. Fonseca, Cristina P. Vieira, Jorge Vieira, 2008, Journal of Molecular Evolution.

Transposable elements and genome evolution: the case of Drosophila simulans

C. Vieira, C. Biémont, D. Lepetit, 2004, Genetica.

Resolving the phylogenetic relationships and evolutionary history of the Drosophila virilis group using multilocus data.

J. Vieira, M. Reis, C. Vieira, 2011, Molecular phylogenetics and evolution.

Phylogeny of the teashirt‐related zinc finger (tshz) gene family and analysis of the developmental expression of tshz2 and tshz3b in the zebrafish

Nuno A. Fonseca, J. Vieira, C. Vieira, 2010, Developmental dynamics : an official publication of the American Association of Anatomists.

Medicago truncatula contains a second gene encoding a plastid located glutamine synthetase exclusively expressed in developing seeds

C. Vieira, J. Cullimore, H. Carvalho, 2010, BMC Plant Biology.

A new cyanobacterial species with a protective effect on lettuce grown under salinity stress: Envisaging sustainable agriculture practices

J. Vieira, C. Vieira, P. Tamagnini, 2022, Journal of Applied Phycology.

On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3

H. López-Fernández, M. Reboiro-Jato, J. Vieira, 2023, J. Integr. Bioinform..

ATXN1 N-terminal region explains the binding differences of wild-type and expanded forms

H. López-Fernández, M. Reboiro-Jato, J. Vieira, 2019, BMC Medical Genomics.

Low Diversity and Divergence in the fil1 Gene Family of Antirrhinum (Scrophulariaceae)

D. Charlesworth, C. Vieira, 2001, Journal of Molecular Evolution.

Genotype-environment interaction for quantitative trait loci affecting life span in Drosophila melanogaster.

Z B Zeng, T. Mackay, C. Vieira, 2000, Genetics.

Selection against transposable elements in D. simulans and D. melanogaster.

C. Vieira, C. Biémont, 1996, Genetical research.

Letter to the Editor Transposable Element Distribution in Drosophila

C. Hoogland, C. Vieira, A. Tsitrone, 1999 .

Geographical variation in insertion site number of retrotransposon 412 inDrosophila simulans

C. Vieira, C. Biémont, 1996, Journal of Molecular Evolution.

Chromosomal distribution of the 412 retrotransposon in natural populations of Drosophila simulans

C. Hoogland, C. Vieira, C. Biémont, 1997, Heredity.

Maintenance of transposable element copy number in natural populations of Drosophila melanogaster and D. simulans

C. Hoogland, C. Vieira, C. Biémont, 2004, Genetica.

A temperature cline in copy number for 412 but not roo/B104 retrotransposons in populations of Drosophila simulans

C. Vieira, D. Lepetit, Philippe Aubry, 1998, Proceedings of the Royal Society of London. Series B: Biological Sciences.

WORLDWIDE DISTRIBUTION OF TRANSPOSABLE ELEMENT COPY NUMBER IN NATURAL POPULATIONS OF DROSOPHILA SIMULANS

C. Vieira, C. Biémont, D. Lepetit, 2003, Evolution; international journal of organic evolution.

Comparative Genomics Discloses the Uniqueness and the Biosynthetic Potential of the Marine Cyanobacterium Hyella patelloides

T. Zhu, J. Vieira, C. Vieira, 2020, Frontiers in Microbiology.

SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence

Franck Picard, Marie-France Sagot, Camille Marchet, 2016, Nucleic acids research.

The identification of the Rosa S-locus and implications on the evolution of the Rosaceae gametophytic self-incompatibility systems

J. Vieira, C. Vieira, P. Heitzler, 2021, Scientific Reports.

Description of new genera and species of marine cyanobacteria from the Portuguese Atlantic coast.

J. Vieira, C. Vieira, P. Tamagnini, 2017, Molecular phylogenetics and evolution.

Transposition rate of the 412 retrotransposable element is independent of copy number in natural populations of Drosophila simulans.

C. Vieira, C. Biémont, 1997, Molecular biology and evolution.

EvoPPI 1.0: a Web Platform for Within- and Between-Species Multiple Interactome Comparisons and Application to Nine PolyQ Proteins Determining Neurodegenerative Diseases

Rui Camacho, H. López-Fernández, M. Reboiro-Jato, 2019, Interdisciplinary Sciences Computational Life Sciences.

The Josephin domain (JD) containing proteins are predicted to bind to the same interactors: Implications for spinocerebellar ataxia type 3 (SCA3) studies using Drosophila melanogaster mutants

J. Vieira, C. Vieira, André D. Sousa, 2023, Frontiers in Molecular Neuroscience.

Inferences on the number and frequency of S-pollen gene (SFB) specificities in the polyploid Prunus spinosa

J. Vieira, C. Vieira, C P Vieira, 2008, Heredity.

Less effective selection leads to larger genomes

L. Orlando, L. Duret, C. Vieira, 2017, Genome research.

Drosophila Females Undergo Genome Expansion after Interspecific Hybridization

C. Vieira, N. Burlet, A. Fontdevila, 2016, Genome biology and evolution.

Drosophila females undergo genome expansion after interspecific

C. Vieira, N. Burlet, M. P. Guerreiro, 2016 .

Drosophila Females Undergo Genome Expansion after

C. Vieira, A. Fontdevila, Valèria Romero-Soriano, 2016 .

Drosophila suzukii oxidative stress response involves Jheh gene cluster but not transposable elements

C. Vieira, Angelo Jacquet, P. Gibert, 2020, bioRxiv.

Genetic and molecular characterization of three novel S-haplotypes in sour cherry (Prunus cerasus L.)

J. Vieira, C. Vieira, A. Iezzoni, 2008, Journal of experimental botany.

Evolutionary patterns at the RNase based gametophytic self - incompatibility system in two divergent Rosaceae groups (Maloideae and Prunus)

Nuno A. Fonseca, Pedro G. Ferreira, J. Vieira, 2010, BMC Evolutionary Biology.

RNase-Based Gametophytic Self-Incompatibility Evolution: Questioning the Hypothesis of Multiple Independent Recruitments of the S-Pollen Gene

Nuno A. Fonseca, J. Vieira, C. Vieira, 2009, Journal of Molecular Evolution.

Recombination at Prunus S-Locus Region SLFL1 Gene

J. Vieira, C. Vieira, Raquel A. M. Santos, 2008, Genetics.

Transposon proliferation in an asexual parasitoid.

P. de Knijff, J. D. den Dunnen, C. Vieira, 2012, Molecular ecology.

Is genome size of Lepidoptera linked to host plant range?

S. Dupas, C. Vieira, M. Harry, 2016 .

Rewired glycosylation activity promotes scarless regeneration and functional recovery in spiny mice after complete spinal cord transection.

J. Vieira, C. Vieira, Joana Nogueira-Rodrigues, 2021, Developmental cell.

BDBM 1.0: A Desktop Application for Efficient Retrieval and Processing of High-Quality Sequence Data and Application to the Identification of the Putative Coffea S-Locus

H. López-Fernández, M. Reboiro-Jato, J. Vieira, 2019, Interdisciplinary Sciences: Computational Life Sciences.

Bioinformatics Protocols for Quickly Obtaining Large-Scale Data Sets for Phylogenetic Inferences

H. López-Fernández, M. Reboiro-Jato, J. Vieira, 2018, Interdisciplinary Sciences: Computational Life Sciences.

A Comparative Study of the Short Term Cold Resistance Response in Distantly Related Drosophila Species: The Role of regucalcin and Frost

C. Schlötterer, J. Vieira, M. Reis, 2011, PloS one.

ADOPS - Automatic Detection Of Positively Selected Sites

Nuno A. Fonseca, Florentino Fernández Riverola, Miguel Reboiro-Jato, 2012, J. Integr. Bioinform..

Different Positively Selected Sites at the Gametophytic Self-Incompatibility Pistil S-RNase Gene in the Solanaceae and Rosaceae (Prunus, Pyrus, and Malus)

Cristina P. Vieira, Jorge Vieira, J. Vieira, 2007, Journal of Molecular Evolution.

Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen

Florentino Fernández Riverola, Hugo López-Fernández, Miguel Reboiro-Jato, 2020, PACBB.

Inferring Positive Selection in Large Viral Datasets

Florentino Fernández Riverola, Hugo López-Fernández, Miguel Reboiro-Jato, 2019, PACBB.

Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects

Hugo López-Fernández, Florentino Fdez-Riverola, Miguel Reboiro-Jato, 2018, Interdisciplinary Sciences: Computational Life Sciences.

Evolution of genome size in Drosophila. is the invader's genome being invaded by transposable elements?

C. Vieira, C. Biémont, C. Arpin, 2002, Molecular biology and evolution.

The evolution of vitamin C biosynthesis and transport in animals

J. Vieira, C. Vieira, Pedro Duque, 2022, BMC ecology and evolution.

ATXN1 N-terminal region explains the binding differences of wild-type and expanded forms

H. López-Fernández, M. Reboiro-Jato, J. Vieira, 2019, BMC Medical Genomics.

Oxidative and radiation stress induces transposable element transcription in Drosophila melanogaster

C. Vieira, E. Loreto, M. T. Rosa, 2021, Journal of evolutionary biology.

Genomic analysis of European Drosophila melanogaster populations reveals 1 longitudinal structure , continent-wide selection , and previously unknown DNA viruses 2 3

Maite G. Barrón, J. Parsch, B. Zwaan, 2020 .

De novo identification, differential analysis and functional annotation of SNPs from RNA-seq data in non-model species

C. Vieira, M. Sagot, F. Picard, 2015, bioRxiv.

Genomic analysis of European Drosophila melanogaster populations on a dense spatial scale reveals longitudinal population structure and continent-wide selection

Maite G. Barrón, J. Parsch, B. Deplancke, 2018 .

On the identification of human selected loci in grapevines

J. Vieira, C. Vieira, 2010, Heredity.

Partitional Clustering of Protein Sequences - An Inductive Logic Programming Approach

Nuno A. Fonseca, Rui Camacho, Vítor Santos Costa, 2009, IWANN.

Variation of the genome size estimate with environmental conditions in Drosophila melanogaster

C. Vieira, C. Biémont, C. Nardon, 2003, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

Open Access Research Article Evolutionary Patterns at the Rnase Based Gametophytic Self -incompatibility System in Two Divergent Rosaceae Groups (maloideae and Prunus)

Nuno A. Fonseca, Pedro G. Ferreira, J. Vieira, 2022 .

Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster

C. Vieira, Josefa González, L. Guio, 2016, Scientific Reports.

Homology-Free Detection of Transposable Elements Unveils Their Dynamics in Three Ecologically Distinct Rhodnius Species

C. Vieira, C. Goubert, F. A. Monteiro, 2020, Genes.

On the location of the gene(s) harbouring the advantageous variant that maintains the X/4 fusion of Drosophila americana.

J. Vieira, C. Vieira, J. Dias, 2006, Genetical research.

Gene Classification Based on Amino Acid Motifs and Residues: The DLX (distal-less) Test Case

Nuno A. Fonseca, J. Vieira, C. Vieira, 2009, PloS one.

EvoPPI 1.0: a Web Platform for Within- and Between-Species Multiple Interactome Comparisons and Application to Nine PolyQ Proteins Determining Neurodegenerative Diseases

Rui Camacho, H. López-Fernández, M. Reboiro-Jato, 2019, Interdisciplinary Sciences: Computational Life Sciences.

Genomic characterization of a repetitive motif strongly associated with developmental genes in Drosophila

J. Costas, J. Vieira, C. Vieira, 2003, BMC Genomics.

Isolation and characterization of soil cyanobacteria and microalgae and evaluation of their potential as plant biostimulants

J. Vieira, C. Vieira, P. Tamagnini, 2023, Plant and Soil.