H. Akashi

发表

Evolution of genes and genomes on the Drosophila phylogeny

Melanie A. Huntley, Sonja J. Prohaska, Albert J. Vilella, 2007, Nature.

Mitochondrial-nuclear interactions and accelerated compensatory evolution: evidence from the primate cytochrome C oxidase complex.

H. Akashi, N. Osada, 2012, Molecular biology and evolution.

Assembly constraints drive co-evolution among ribosomal constituents

Sudip Kundu, Saurav Mallik, Hiroshi Akashi, 2015, Nucleic acids research.

Molecular Phylogeny of the Drosophila melanogaster Species Subgroup

Hiroshi Akashi, H. Akashi, Wen-Ya Ko, 2003, Journal of Molecular Evolution.

Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

H. Akashi, 1994, Genetics.

Translational selection and molecular evolution.

H. Akashi, A. Eyre-Walker, Hiroshi Akashi, 1998, Current opinion in genetics & development.

Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.

H. Akashi, Hiroshi Akashi, 1995, Genetics.

Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila.

S. Schaeffer, H. Akashi, H Akashi, 1997, Genetics.

Gene expression and molecular evolution.

H. Akashi, H Akashi, Hiroshi Akashi, 2001, Current opinion in genetics & development.

Codon bias evolution in Drosophila. Population genetics of mutation-selection drift.

H. Akashi, H Akashi, 1997, Gene.

Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis

Takashi Gojobori, Hiroshi Akashi, T. Gojobori, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Evaluation of Ancestral Sequence Reconstruction Methods to Infer Nonstationary Patterns of Nucleotide Substitution

Ziheng Yang, H. Akashi, Tomotaka Matsumoto, 2015, Genetics.

Codon Usage Selection Can Bias Estimation of the Fraction of Adaptive Amino Acid Fixations.

H. Akashi, Pablo Baeza-Centurion, Tomotaka Matsumoto, 2016, Molecular biology and evolution.

Comprehensive Primer Design for Analysis of Population Genetics in Non-Sequenced Organisms

H. Akashi, M. Kawata, T. Makino, 2012, PloS one.

Absence of polymorphism at the ZFY locus on the human Y chromosome.

W. Gilbert, H. Akashi, R. Dorit, 1995, Science.

Strong Regional Heterogeneity in Base Composition Evolution on the Drosophila X Chromosome

H. Akashi, Wen-Ya Ko, Shengfu Piao, 2006, Genetics.

Weak Selection and Protein Evolution

Tomoko Ohta, Hiroshi Akashi, T. Ohta, 2012, Genetics.

Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster.

H. Akashi, H Akashi, Hiroshi Akashi, 1996, Genetics.

Molecular Evidence for Natural Selection

Hiroshi Akashi, M. Kreitman, H. Akashi, 1995 .

Distinguishing Among Evolutionary Forces Acting on Genome-Wide Base Composition: Computer Simulation Analysis of Approximate Methods for Inferring Site Frequency Spectra of Derived Mutations

H. Akashi, Tomotaka Matsumoto, 2018, G3: Genes, Genomes, Genetics.

Ancestral Inference and the Study of Codon Bias Evolution: Implications for Molecular Evolutionary Analyses of the Drosophila melanogaster Subgroup

Piyush Goel, Hiroshi Akashi, P. Goel, 2007, PloS one.

Molecular Evolution in the Drosophila melanogaster Species Subgroup: Frequent Parameter Fluctuations on the Timescale of Molecular Divergence

Piyush Goel, Hiroshi Akashi, P. Goel, 2006, Genetics.

Mutation pressure, natural selection, and the evolution of base composition in Drosophila

Adam Eyre-Walker, Hiroshi Akashi, H. Akashi, 2004, Genetica.

A test of translational selection at 'silent' sites in the human genome: base composition comparisons in alternatively spliced genes.

H. Akashi, K Iida, H Akashi, 2000, Gene.

Within- and between-species DNA sequence variation and the 'footprint' of natural selection.

H. Akashi, H Akashi, 1999, Gene.

Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination.

H. Akashi, Hiroshi Akashi, 1999, Genetics.

Distinguishing the effects of mutational biases and natural selection on DNA sequence variation.

H. Akashi, 1997, Genetics.

Translational selection and yeast proteome evolution.

Hiroshi Akashi, H. Akashi, 2003, Genetics.

Relative importance of habitat use, range expansion, and speciation in local species diversity of Anolis lizards in Cuba

Luis M. Díaz, H. Akashi, M. Kawata, 2013 .

Identification of a reptile lyssavirus in Anolis allogus provided novel insights into lyssavirus evolution

H. Akashi, M. Kawata, K. Tomonaga, 2020, Virus Genes.

Disease Outbreaks: Critical Biological Factors and Control Strategies

Tomotaka Matsumoto, Hiroshi Akashi, H. Akashi, 2016, Urban Resilience.

Purifying Selection: Action on Silent Sites

R. Nielsen, H. Akashi, 2007 .

Estimating the Age of the Common Ancestor of Men from the ZFY Intron

P. Donnelly, A. von Haeseler, S. Tavaré, 1996, Science.

Factors affecting interspecific differences in genetic divergence among populations of Anolis lizards in Cuba

Luis M. Díaz, H. Akashi, M. Kawata, 2018, Zoological Letters.

Faculty Opinions recommendation of Intimate evolution of proteins. Proteome atomic content correlates with genome base composition.

H. Akashi, 2004 .

HSF1 and HSF3 cooperatively regulate the heat shock response in lizards

H. Akashi, M. Kawata, T. Makino, 2017, PloS one.

Do Amino Acid Biosynthetic Costs Constrain Protein Evolution in Saccharomyces cerevisiae?

Michael L. Raymer, Dan E. Krane, Douglas W. Raiford, 2008, Journal of Molecular Evolution.

Response: Estimating the Age of the Common Ancestor of Men from the ZFY Intron

W. Gilbert, H. Akashi, R. Dorit, 1996, Science.

Factors affecting interspecific differences in genetic divergence among populations of Anolis lizards in Cuba

Luis M. Díaz, H. Akashi, M. Kawata, 2018, Zoological Letters.

Evaluation of Ancestral Sequence Reconstruction Methods to Infer Nonstationary Patterns of Nucleotide Substitution

Ziheng Yang, H. Akashi, Tomotaka Matsumoto, 2015, Genetics.

Drosophila Evolutionary Genetics

H. Akashi, M. Noor, 2001 .