Sven Findeiß

发表

Evolution of genes and genomes on the Drosophila phylogeny

Melanie A. Huntley, Sonja J. Prohaska, Albert J. Vilella, 2007, Nature.

A novel family of plasmid-transferred anti-sense ncRNAs

P. Stadler, Sven Findeiß, Cornelius Schmidtke, 2010, RNA biology.

De novo design of a synthetic riboswitch that regulates transcription termination

P. Stadler, Sven Findeiß, Manja Wachsmuth, 2012, Nucleic acids research.

Design of transcription regulating riboswitches.

Sven Findeiß, Peter F Stadler, Mario Mörl, 2015, Methods in enzymology.

Beyond Plug and Pray: Context Sensitivity and in silico Design of Artificial Neomycin Riboswitches

P. Stadler, Sven Findeiß, M. Mörl, 2020, bioRxiv.

Conserved introns reveal novel transcripts in Drosophila melanogaster.

Rolf Backofen, Michael Hiller, Sonja J. Prohaska, 2009, Genome research.

Protein-coding structured RNAs: A computational survey of conserved RNA secondary structures overlapping coding regions in drosophilids.

Sonja J. Prohaska, P. Stadler, Sven Findeiß, 2011, Biochimie.

Computational RNomics of Drosophilids

Sonja J. Prohaska, P. Stadler, J. Hackermüller, 2007, BMC Genomics.

Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions

P. Stadler, J. Vogel, Sven Findeiß, 2011, Nucleic acids research.

Mapping the RNA-Seq trash bin

P. Stadler, Sven Findeiß, M. Alexis, 2013, RNA biology.

Quantitative characterization of translational riboregulators using an in vitro transcription-translation system

Ilka M. Axmann, A. Jaramillo, Sven Findeiß, 2018, bioRxiv.

Expanding the repertoire of bacterial (non-)coding RNAs

Sven Findeiß, Sven Findeiss, 2011 .

Optimization of parameters for coverage of low molecular weight proteins

Manolis Kellis, Peter F. Stadler, Sven Findeiß, 2010, Analytical and bioanalytical chemistry.

Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics.

P. Stadler, I. Hofacker, Sven Findeiß, 2013, Journal of proteomics.

Bioinformatics of prokaryotic RNAs

Andreas S. Richter, P. Stadler, R. Backofen, 2014, RNA biology.

Non-Coding RNAs

P. Stadler, Jana Hertel, Sven Findeiß, 2008, Cellular Oncology : the Official Journal of the International Society for Cellular Oncology.

Tailored machine learning models for functional RNA detection in genome-wide screens

P. Stadler, Sven Findeiß, Felix Kühnl, 2022, bioRxiv.

Quantitative characterization of translational riboregulators using an in vitro transcription-translation system

Ilka M. Axmann, A. Jaramillo, Sven Findeiß, 2018, bioRxiv.

Traces of post-transcriptional RNA modifications in deep sequencing data

Steve Hoffmann, David Langenberger, Peter F Stadler, 2011, Biological chemistry.

of RNA tandem repeats creating RNA droplets forming liquid-liquid phase separation In Vitro Screening

Sven Findeiß, M. Szachniuk, Yann Ponty, 2022 .

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

Sonja J. Prohaska, Peter F. Stadler, Manja Marz, 2011, BMC Bioinformatics.

The small RNA Aar in Acinetobacter baylyi: a putative regulator of amino acid metabolism

Andreas S. Richter, Sven Findeiß, Jennifer A. Taylor, 2010, Archives of Microbiology.

RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data.

Nick Goldman, Peter F Stadler, Stefan Washietl, 2011, RNA.

The primary transcriptome of the major human pathogen Helicobacter pylori

Kristin Reiche, Peter F. Stadler, Steve Hoffmann, 2010, Nature.

RNAz 2.0: Improved Noncoding RNA Detection

Peter F. Stadler, Ivo L. Hofacker, Sven Findeiß, 2010, Pacific Symposium on Biocomputing.

Beyond Plug and Pray: Context Sensitivity and in silico Design of Artificial Neomycin Riboswitches

Christian Günzel, Felix Kühnl, Katharina Arnold, 2020, bioRxiv.

Design criteria for synthetic riboswitches acting on transcription

Ronny Lorenz, Sven Findeiß, Peter F Stadler, 2015, RNA biology.

Design of Artificial Riboswitches as Biosensors

Sebastian Will, Peter F. Stadler, Sven Findeiß, 2017, Sensors.

TSSAR: TSS annotation regime for dRNA-seq data

Peter F. Stadler, Ronny Lorenz, Ivo L. Hofacker, 2014, BMC Bioinformatics.

Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools.

Monika J. Madej, P. Stadler, J. Hackermüller, 2008, Microbiology.

Common Features in lncRNA Annotation and Classification: A Survey

P. Stadler, Sven Findeiß, Rituparno Sen, 2021, Non-coding RNA.

Evolving methods for rational de novo design of functional RNA molecules.

Christian Günzel, Sven Findeiß, Mario Mörl, 2019, Methods.

In silico design of ligand triggered RNA switches

Christoph Flamm, Felix Kühnl, Sven Findeiß, 2018, bioRxiv.

In silico design of ligand triggered RNA switches

Christoph Flamm, Ivo L. Hofacker, Felix Kühnl, 2018, bioRxiv.

RNAblueprint: flexible multiple target nucleic acid sequence design

Christoph Flamm, Ivo L. Hofacker, Sven Findeiß, 2017, Bioinform..

Assessing the Quality of Cotranscriptional Folding Simulations

Peter F. Stadler, Sven Findeiss, Felix Kuehnl, 2020, bioRxiv.

Applicability of a computational design approach for synthetic riboswitches

Peter F. Stadler, Sven Findeiß, Mario Mörl, 2016, Nucleic acids research.

Mapping the RNA-Seq trash bin

P. Stadler, Sven Findeiß, M. Alexis, 2013, RNA Biology.

Ligand-dependent tRNA processing by a rationally designed RNase P riboswitch

P. Stadler, Sven Findeiß, M. Mörl, 2021, Nucleic acids research.