J. Rozas

发表

Evolution of genes and genomes on the Drosophila phylogeny

Melanie A. Huntley, Sonja J. Prohaska, Albert J. Vilella, 2007, Nature.

The Drosophila melanogaster Genetic Reference Panel

Kevin R. Thornton, Maite G. Barrón, R. Gibbs, 2012, Nature.

Genome Sequence of the Pea Aphid Acyrthosiphon pisum

G. K. Davis, David L. Steffen, Xiao Li He, 2010, PLoS biology.

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

Evgeny M. Zdobnov, Dan Graur, Christine G. Elsik, 2010, Proceedings of the National Academy of Sciences.

Comparative Genomics of the Odorant-Binding and Chemosensory Protein Gene Families across the Arthropoda: Origin and Evolutionary History of the Chemosensory System

Julio Rozas, Filipe G. Vieira, J. Rozas, 2011, Genome biology and evolution.

Uncovering the Functional Constraints Underlying the Genomic Organization of the Odorant-Binding Protein Genes

J. Rozas, P. Librado, 2013, Genome biology and evolution.

organisation of the Odorant-Binding Protein genes

J. Rozas, P. Librado, 2013 .

Rapid Functional and Sequence Differentiation of a Tandemly Repeated Species-Specific Multigene Family in Drosophila

Pablo Librado, Julio Rozas, Mijuan Shi, 2017, Molecular biology and evolution.

Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory

Stephen T. Pollard, D. Sankoff, X. Fang, 2017, Nature Ecology &Evolution.

The birth-and-death evolution of multigene families revisited.

J. Rozas, L. Rebordinos, J. M. Eirín-López, 2012, Genome dynamics.

Family Size Evolution in Drosophila Chemosensory Gene Families: A Comparative Analysis with a Critical Appraisal of Methods

J. Rozas, A. Sánchez-Gracia, F. C. Almeida, 2014, Genome biology and evolution.

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

Jayarama, Priyono, Corinne Da Silva, 2014, Science.

The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima

Galina A. Erikson, Peshtewani K. Aqrawi, Adelaide C. Rhodes, 2014, PLoS biology.

Cryptic species delineation in freshwater planarians of the genus Dugesia (Platyhelminthes, Tricladida): Extreme intraindividual genetic diversity, morphological stasis, and karyological variability.

J. Rozas, A. Sánchez-Gracia, M. Riutort, 2020, Molecular phylogenetics and evolution.

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets.

Juan C. Sánchez-DelBarrio, S. Guirao-Rico, J. Rozas, 2017, Molecular biology and evolution.

Mycobacterial Phylogenomics: An Enhanced Method for Gene Turnover Analysis Reveals Uneven Levels of Gene Gain and Loss among Species and Gene Families

J. Rozas, F. Vieira, P. Librado, 2014, Genome biology and evolution.

Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes.

M. Aguadé, J. Rozas, David Alvarez-Ponce, 2008, Genome research.

Comparative Genomics of the Vertebrate Insulin/TOR Signal Transduction Pathway: A Network-Level Analysis of Selective Pressures

M. Aguadé, J. Rozas, David Alvarez-Ponce, 2010, Genome biology and evolution.

Divergent evolution and molecular adaptation in the Drosophila odorant-binding protein family: inferences from sequence variation at the OS-E and OS-F genes

J. Rozas, A. Sánchez-Gracia, A. Sánchez‐Gracia, 2008, BMC Evolutionary Biology.

Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution

Julio Rozas, Alejandro Sánchez-Gracia, Filipe G Vieira, 2007, Genome Biology.

Computational prediction of the phenotypic effects of genetic variants: basic concepts and some application examples in Drosophila nervous system genes

S. Guirao-Rico, J. Rozas, A. Sánchez-Gracia, 2017, Journal of neurogenetics.

Genome mining and sequence analysis of chemosensory soluble proteins in arthropods.

J. Rozas, A. Sánchez-Gracia, J. Vizueta, 2020, Methods in enzymology.

Comparative Genomics Reveals Thousands of Novel Chemosensory Genes and Massive Changes in Chemoreceptor Repertories across Chelicerates

J. Rozas, A. Sánchez-Gracia, J. Vizueta, 2018, Genome biology and evolution.

Evolution of Chemosensory Gene Families in Arthropods: Insight from the First Inclusive Comparative Transcriptome Analysis across Spider Appendages

J. Rozas, M. Arnedo, A. Sánchez-Gracia, 2016, Genome biology and evolution.

Understanding the Early Evolutionary Stages of a Tandem Drosophilamelanogaster-Specific Gene Family: A Structural and Functional Population Study

J. Rozas, P. Librado, Shudan Yeh, 2020, Molecular biology and evolution.

Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings

T. Alioto, M. Gut, S. Aerts, 2020, Nature Communications.

Genomic adaptations to aquatic and aerial life in mayflies and the origin of wings in insects

T. Alioto, M. Gut, S. Aerts, 2019, bioRxiv.

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

Gloria I. Giraldo-Calderón, Daniel R. Caffrey, Shelby L. Bidwell, 2016, Nature Communications.

Chromosome-Level Genome Assembly of the Common Chaffinch (Aves: Fringilla coelebs): A Valuable Resource for Evolutionary Biology

J. Rozas, B. Milá, G. Blanco, 2020, bioRxiv.

Dense sampling of bird diversity increases power of comparative genomics

Timothy B Sackton, Bette A. Loiselle, A. T. Vasconcelos, 2020, Nature.

The First Genome of the Balearic Shearwater (Puffinus mauretanicus) Provides a Valuable Resource for Conservation Genomics and Sheds Light on Adaptation to a Pelagic lifestyle

J. Rozas, M. Genovart, J. González‐Solís, 2022, Genome biology and evolution.

Comparative Genomics Uncovers Unique Gene Turnover and Evolutionary Rates in a Gene Family Involved in the Detection of Insect Cuticular Pheromones

J. Rozas, Montserrat Torres-Oliva, A. Sánchez-Gracia, 2016, Genome Biology and Evolution.

The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

R. Guigó, N. Moran, J. Rozas, 2020, BMC Biology.

Evolutionary Analysis of Mitogenomes from Parasitic and Free-Living Flatworms

J. Rozas, D. Littlewood, M. Riutort, 2015, PloS one.

Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

R. Guigó, N. Moran, J. Rozas, 2020, BMC Biology.

Evolution of the odorant-binding protein gene family in Drosophila

J. Rozas, J. Hurtado, E. Hasson, 2022, Frontiers in Ecology and Evolution.

The chromosome-scale assembly of the Canary Islands endemic spider Dysdera sheds light on the origin and genome structure of chemoreceptor gene families in chelicerates

J. Rozas, M. Arnedo, J. Vizueta, 2021 .

Understanding the early evolutionary stages of a tandem D. melanogaster -specific gene family: a structural and functional population study

J. Rozas, P. Librado, Shudan Yeh, 2020 .

Transfer of genetic information in the rp 49 region of Drosophila subobscura between different chromosomal gene arrangements ( chromosomal polymorphism / nucleotide polymorphism / populatfon genetics / molecular evolution / ribosomal protein )

M. Aguadé, J. Rozas, 2005 .

Insights into the origin and distribution of biodiversity in the Brazilian Atlantic forest hot spot: a statistical phylogeographic study using a low-dispersal organism

J. Rozas, M. Riutort, M. Álvarez‐Presas, 2014, Heredity.

A program to optimize the design of oligonucleotides for PCR amplification.

J. Rozas, 1991, The Journal of heredity.

Analysis of DNA Sequence Polymorphisms with DnaSP

J. Rozas, 2014 .

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

Pablo Librado, Julio Rozas, J. Rozas, 2009, Bioinform..

DnaSP, DNA polymorphism analyses by the coalescent and other methods

Xavier Messeguer, Julio Rozas, Ricardo Rozas, 2003, Bioinform..

DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis

Julio Rozas, Ricardo Rozas, J. Rozas, 1999, Bioinform..

Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta.

Yang Wang, Ioannis Michalopoulos, Susan J. Brown, 2016, Insect biochemistry and molecular biology.

The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation

D. Sankoff, J. Salojärvi, L. Herrera-Estrella, 2019, Proceedings of the National Academy of Sciences.

Chance and predictability in evolution: The genomic basis of convergent dietary specializations in an adaptive radiation

J. Rozas, M. Arnedo, J. Vizueta, 2019, Molecular ecology.

Evidence for horizontal gene transfer from Eukaryotes to Myxobacteria

J. Rozas, B. Cormand, V. Díaz, 2002 .

Genome-Wide Analysis of Adaptive Molecular Evolution in the Carnivorous Plant Utricularia gibba

L. Herrera-Estrella, J. Rozas, P. Librado, 2014, Genome biology and evolution.

Weak Polygenic Selection Drives the Rapid Adaptation of the Chemosensory System: Lessons from the Upstream Regions of the Major Gene Families

J. Rozas, P. Librado, 2016, Genome biology and evolution.

BITACORA: A comprehensive tool for the identification and annotation of gene families in genome assemblies

Julio Rozas, Alejandro Sánchez-Gracia, Joel Vizueta, 2019, bioRxiv.

DOMINO: development of informative molecular markers for phylogenetic and genome-wide population genetic studies in non-model organisms

Julio Rozas, Miquel A. Arnedo, Cristina Frías-López, 2016, Bioinform..

Molecular population genetics of the insulin/TOR signal transduction pathway: a network-level analysis in Drosophila melanogaster.

S. Guirao-Rico, M. Aguadé, J. Rozas, 2012, Molecular biology and evolution.

Molecular population genetics of the OBP83 genomic region in Drosophila subobscura and D. guanche: contrasting the effects of natural selection and gene arrangement expansion in the patterns of nucleotide variation

J. Rozas, A. Sánchez‐Gracia, 2011, Heredity.

DNA sequence polymorphism analysis using DnaSP.

J. Rozas, 2009, Methods in molecular biology.

Unusual Pattern of Nucleotide Sequence Variation at the OS-E and OS-F Genomic Regions of Drosophila simulans

J. Rozas, A. Sánchez‐Gracia, 2007, Genetics.

Chromosomal Inversion Polymorphism Leads to Extensive Genetic Structure

M. Aguadé, J. Rozas, C. Segarra, 2005, Genetics.

Nucleotide polymorphism in the RpII215 gene region of the insular species Drosophila guanche: reduced efficacy of weak selection on synonymous variation.

M. Aguadé, J. Rozas, C. Segarra, 2003, Molecular biology and evolution.

DNA variation at the rp49 gene region in Drosophila madeirensis and D. subobscura from Madeira: inferences about the origin of an insular endemic species

M. Aguadé, J. Rozas, C. Segarra, 2001 .

Molecular and chromosomal phylogeny in the obscura group of Drosophila inferred from sequences of the rp49 gene region.

M. Aguadé, J. Rozas, C. Segarra, 1998, Molecular phylogenetics and evolution.

Comparative Genomics of the Major Chemosensory Gene Families in Arthropods

J. Rozas, F. C. Almeida, A. Sánchez‐Gracia, 2011 .

Molecular evolution of the major chemosensory gene families in insects

J. Rozas, J Rozas, A Sánchez-Gracia, 2009, Heredity.

Statistical Power Analysis of Neutrality Tests Under Demographic Expansions, Contractions and Bottlenecks With Recombination

A. Navarro, J. Rozas, F. Calafell, 2008, Genetics.

Smelling in the dark: Phylogenomic insights into the chemosensory system of a subterranean beetle

J. Rozas, I. Ribera, R. Fernández, 2021, Molecular ecology.

Genome-wide DNA polymorphism analyses using VariScan

Albert J. Vilella, Stephan Hutter, Julio Rozas, 2006, BMC Bioinformatics.

High Gene Family Turnover Rates and Gene Space Adaptation in the Compact Genome of the Carnivorous Plant Utricularia gibba.

L. Herrera-Estrella, J. Rozas, P. Librado, 2015, Molecular biology and evolution.

BadiRate: estimating family turnover rates by likelihood-based methods

Pablo Librado, Julio Rozas, Filipe G. Vieira, 2012, Bioinform..

Positive selection in extra cellular domains in the diversification of Strigamia maritima chemoreceptors

J. Rozas, H. Robertson, F. C. Almeida, 2015, Front. Ecol. Evol..

Functional evidence that a recently evolved Drosophila sperm-specific gene boosts sperm competition

D. Hartl, J. Rozas, P. Librado, 2012, Proceedings of the National Academy of Sciences.

Patterns of nucleotide polymorphism and divergence in the odorant-binding protein genes OS-E and OS-F: analysis in the melanogaster species subgroup of Drosophila.

M. Aguadé, J. Rozas, A. Sánchez‐Gracia, 2003, Genetics.

PopDrowser: the Population Drosophila Browser

Sònia Casillas, Miquel Ràmia, Antonio Barbadilla, 2012, Bioinform..

Unique Features of Odorant-Binding Proteins of the Parasitoid Wasp Nasonia vitripennis Revealed by Genome Annotation and Comparative Analyses

J. Rozas, S. Forêt, Jing-Jiang Zhou, 2012, PloS one.

Unexpected High Polymorphism at the FABP4 Gene Unveils a Complex History for Pig Populations

J. Rozas, M. Pérez-Enciso, J. Folch, 2006, Genetics.

RPS4Y gene family evolution in primates

Julio Rozas, Francesc López-Giráldez, Thomas Kellermann, 2008, BMC Evolutionary Biology.

Statistical properties of new neutrality tests against population growth.

J. Rozas, S. Ramos-Onsins, 2002, Molecular biology and evolution.

The Tetragnatha kauaiensis Genome Sheds Light on the Origins of Genomic Novelty in Spiders

D. Petrov, J. Rozas, Bent Petersen, 2021, Genome biology and evolution.

The estimation of the number and the length distribution of gene conversion tracts from population DNA sequence data.

E. Betrán, J. Rozas, A. Barbadilla, 1997, Genetics.

The draft genome sequence of the spider Dysdera silvatica (Araneae, Dysderidae): A valuable resource for functional and evolutionary genomic studies in chelicerates

J. Rozas, M. Arnedo, Silvia Hinojosa-Alvarez, 2019, GigaScience.

Assessing Associations between the AURKA-HMMR-TPX2-TUBG1 Functional Module and Breast Cancer Risk in BRCA1/2 Mutation Carriers

W. Chung, R. Nussbaum, D. Steinemann, 2015, PloS one.

Integrating Sequence Capture and Restriction Site-Associated DNA Sequencing to Resolve Recent Radiations of Pelagic Seabirds

J. Rozas, R. Chesser, A. Welch, 2021, Systematic biology.

Gene duplications in the E. coli genome: common themes among pathotypes

J. Rozas, A. Juárez, J. Sánchez-Herrero, 2019, BMC Genomics.

Species delimitation using genomic data to resolve taxonomic uncertainties in a speciation continuum of pelagic seabirds.

J. Rozas, J. González‐Solís, M. Riutort, 2022, Molecular phylogenetics and evolution.

Palaeoceanographic changes in the late Pliocene promoted rapid diversification in pelagic seabirds

J. Rozas, R. Chesser, A. Welch, 2021, Journal of Biogeography.

DNA variation at the rp49 gene region of Drosophila simulans: evolutionary inferences from an unusual haplotype structure.

M. Aguadé, J. Rozas, G. Blandin, 2001, Genetics.

Genome annotation and comparative analyses of the odorant‐binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum

J. Rozas, C. Smadja, Jing-Jiang Zhou, 2010, Insect molecular biology.

VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data

Albert J. Vilella, Angel Blanco-Garcia, Stephan Hutter, 2005, Bioinform..

On the shoulder of giants: Mitogenome recovery from non‐targeted genome projects for phylogenetic inference and molecular evolution studies

J. Rozas, J. Pons, M. Arnedo, 2020 .

The genome of the Balearic shearwater (Puffinus mauretanicus), a Critically Endangered seabird: a valuable resource for evolutionary and conservation genomics

J. Rozas, M. Genovart, J. González‐Solís, 2021, bioRxiv.

Smelling in the dark: phylogenomic insights on the chemosensory system of a subterranean beetle

J. Rozas, I. Ribera, R. Fernández, 2020, bioRxiv.

Comparative analysis of tissue-specific transcriptomes in the funnel-web spider Macrothele calpeiana (Araneae, Hexathelidae)

S. Guirao-Rico, J. Rozas, M. Arnedo, 2015, PeerJ.

TRUFA: A User-Friendly Web Server for de novo RNA-seq Analysis Using Cluster Computing

Luis Cabellos, Rafael Zardoya, Cristina Frías-López, 2015, Evolutionary bioinformatics online.

Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings

T. Alioto, M. Gut, S. Aerts, 2020, Nature Communications.

DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis

Julio Rozas, Ricardo Rozas, J. Rozas, 1997, Comput. Appl. Biosci..

Gene conversion is involved in the transfer of genetic information between naturally occurring inversions of Drosophila.

M. Aguadé, J. Rozas, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Nucleotide Polymorphism at the rp49 region of Drosophila subobscura: Lack of geographic subdivision within chromosomal arrangements in Europe

M. Aguadé, J. Rozas, C. Segarra, 1995 .

Using Restriction-Map Analysis to Characterize the Colonization Process of Drosophila subobscura on the American Continent I. Rp49 Region

M. Aguadé, J. Rozas, 1991 .

Evidence of extensive genetic exchange in the rp49 region among polymorphic chromosome inversions in Drosophila subobscura.

M. Aguadé, J. Rozas, 1990, Genetics.

Colonization of America by Drosophila subobscura: effect of the founder event on the mitochondrial DNA polymorphism.

J. Rozas, A. Prevosti, M. Hernández, 1990, Molecular biology and evolution.

Molecular population genetics of the rp49 gene region in different chromosomal inversions of Drosophila subobscura.

M. Aguadé, J. Rozas, C. Segarra, 1999, Genetics.

Transfer of genetic information in the rp49 region of Drosophila subobscura between different chromosomal gene arrangements.

M. Aguadé, J. Rozas, 1993, Proceedings of the National Academy of Sciences of the United States of America.

The role of historical factors and natural selection in the evolution of breeding systems of Oxalis alpina in the Sonoran desert ‘Sky Islands’

J. Rozas, E. Martínez‐Meyer, S. Weller, 2010, Journal of evolutionary biology.

The nature of introns 4–7 largely reflects the lineage specificity of HLA–A alleles

J. Rozas, R. Blasczyk, H. Elsner, 2002, Immunogenetics.

Streptococcus gallolyticus subsp. gallolyticus from Human and Animal Origins: Genetic Diversity, Antimicrobial Susceptibility, and Characterization of a Vancomycin-Resistant Calf Isolate Carrying a vanA-Tn1546-Like Element

F. Baquero, J. Rozas, P. Librado, 2015, Antimicrobial Agents and Chemotherapy.

Evolutionary history of major chemosensory gene families across Panarthropoda.

S. Guirao-Rico, J. Rozas, Lars Hering, 2020, Molecular biology and evolution.

Molecular characterization of Botrytis ourmia-like virus, a mycovirus close to the plant pathogenic genus Ourmiavirus.

J. Rozas, Livia Donaire, M. Ayllón, 2016, Virology.

DnaSP, DNA sequence polymorphism: an interactive program for estimating population genetics parameters from DNA sequence data

Julio Rozas, Ricardo Rozas, J. Rozas, 1995, Comput. Appl. Biosci..

Positive selection versus demography: evolutionary inferences based on an unusual haplotype structure in Drosophila simulans.

M. Aguadé, J. Rozas, S. Ramos-Onsins, 2006, Molecular biology and evolution.

Large-scale adaptive hitchhiking upon high recombination in Drosophila simulans.

M. Aguadé, J. Rozas, H. Quesada, 2003, Genetics.

Land planarians (Platyhelminthes) as a model organism for fine‐scale phylogeographic studies: understanding patterns of biodiversity in the Brazilian Atlantic Forest hotspot

J. Rozas, M. Riutort, M. Álvarez‐Presas, 2011, Journal of evolutionary biology.

RPS4Y gene family evolution in primates

J. Rozas, F. López-Giráldez, O. Andrés, 2008, BMC Evolutionary Biology.

VariScan Analysis of large-scale DNA sequence polymorphism data

Albert J. Vilella, J. Rozas, S. Hutter, 2013 .

Tracing the colonization of Madeira and the Canary Islands by Drosophila subobscura through the study of the rp49 gene region

M. Aguadé, J. Rozas, C. Segarra, 1998 .

Tracing the colonization of Madeira and the Canary Islands by

M. Aguadé, J. Rozas, C. Segarra, 1998 .

Latitudinal differences in sex chromosome inversions, sex linked allozymes, and mitochondrial DNA variation in Drosophila subobscura

J. Rozas, J. Larruga, M. Hernández, 2004, Genetica.