K. Tsirigos

发表

Prediction of signal peptides in archaea.

Konstantinos D. Tsirigos, T. Liakopoulos, P. Bagos, 2008, Protein engineering, design & selection : PEDS.

A guideline to proteome‐wide α‐helical membrane protein topology predictions

Konstantinos D. Tsirigos, L. Käll, A. Elofsson, 2012, Proteomics.

The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides

Arne Elofsson, Nanjiang Shu, Lukas Käll, 2015 .

DisProt 7.0: a major update of the database of disordered proteins

Sonia Longhi, Silvio C. E. Tosatto, Arne Elofsson, 2016, Nucleic Acids Res..

OMPdb : a database of b-barrel outer membrane proteins from Gram-negative bacteria

Konstantinos D. Tsirigos, P. Bagos, S. Hamodrakas, 2010 .

Topology of membrane proteins-predictions, limitations and variations.

Arne Elofsson, Nanjiang Shu, Konstantinos D Tsirigos, 2018, Current opinion in structural biology.

PRED-TMBB 2 : improved topology prediction and detection of beta-barrel outer membrane proteins

P. Bagos, A. Elofsson, K. Tsirigos, 2018 .

Bioinformatics Methods for Topology Prediction of Membrane Proteins

Konstantinos D. Tsirigos, K. Tsirigos, 2017 .

Profiles of Glucose Metabolism in Different Prediabetes Phenotypes, Classified by Fasting Glycemia, 2-Hour OGTT, Glycated Hemoglobin, and 1-Hour OGTT: An IMI DIRECT Study

Konstantinos D. Tsirigos, M. McCarthy, O. Pedersen, 2021, Diabetes.

DisProt 7.0: a major update of the database of disordered proteins

Daniel B. Roche, Damiano Piovesan, A. Dunker, 2016, Nucleic Acids Res..

DisProt 7.0: a major update of the database of disordered proteins

Daniel B. Roche, Damiano Piovesan, A. Dunker, 2016, Nucleic acids research.

The next-generation Open Targets Platform: reimagined, redesigned, rebuilt

Konstantinos D. Tsirigos, E. McDonagh, I. Dunham, 2022, Nucleic Acids Res..

Combined prediction of Tat and Sec signal peptides with hidden Markov models

Pantelis G. Bagos, Konstantinos D. Tsirigos, Theodore D. Liakopoulos, 2010, Bioinform..

Hidden neural networks for transmembrane protein topology prediction

Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, P. Bagos, 2021, Computational and structural biotechnology journal.

SignalP 5.0 improves signal peptide predictions using deep neural networks

Konstantinos D. Tsirigos, S. Brunak, O. Winther, 2019, Nature Biotechnology.

SignalP 6.0 predicts all five types of signal peptides using protein language models

Konstantinos D. Tsirigos, Magnús Halldór Gíslason, S. Brunak, 2022, Nature Biotechnology.

Prediction of lipoprotein signal peptides in Gram-positive bacteria with a Hidden Markov Model.

Pantelis G Bagos, Konstantinos D Tsirigos, Konstantinos D. Tsirigos, 2008, Journal of proteome research.

A Brief History of Protein Sorting Prediction

Søren Brunak, Henrik Nielsen, Konstantinos D Tsirigos, 2019, The Protein Journal.

The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides

Arne Elofsson, Nanjiang Shu, Lukas Käll, 2015, Nucleic Acids Res..

DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks

Konstantinos D. Tsirigos, A. Krogh, Henrik Nielsen, 2022, bioRxiv.

Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins

Arne Elofsson, Nanjiang Shu, Christoph Peters, 2016, Bioinform..

SignalP 6.0 achieves signal peptide prediction across all types using protein language models

Konstantinos D. Tsirigos, Magnús Halldór Gíslason, S. Brunak, 2021, bioRxiv.

Dietary metabolite profiling brings new insight into the relationship between nutrition and metabolic risk: An IMI DIRECT study

Konstantinos D. Tsirigos, Jimmy D Bell, M. McCarthy, 2020, EBioMedicine.

SignalP 5.0 improves signal peptide predictions using deep neural networks

S. Brunak, O. Winther, C. Sønderby, 2019, Nature Biotechnology.

ExTopoDB: a database of experimentally derived topological models of transmembrane proteins

Stavros J. Hamodrakas, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2010, Bioinform..

Prediction of Cell Wall Sorting Signals in Gram-Positive bacteria with a Hidden Markov Model: Application to Complete genomes

Stavros J. Hamodrakas, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2008, J. Bioinform. Comput. Biol..

SignalP 6.0 predicts all five types of signal peptides using protein language models

Magnús Halldór Gíslason, G. von Heijne, Henrik Nielsen, 2022, Nature Biotechnology.

OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins

Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, P. Bagos, 2021, Frontiers in Bioinformatics.

Improved topology prediction using the terminal hydrophobic helices rule

Arne Elofsson, Nanjiang Shu, Christoph Peters, 2016, Bioinform..

The landscape of eukaryotic transmembrane beta barrel proteins.

Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, H. Nielsen, 2020, Journal of proteome research.

A reference map of potential determinants for the human serum metabolome

M. McCarthy, M. Arumugam, O. Pedersen, 2020, Nature.

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation

Silvio C. E. Tosatto, Cristina Marino Buslje, Konstantinos D. Tsirigos, 2021, Nucleic Acids Res..

Semi-supervised learning of Hidden Markov Models for biological sequence analysis

Pantelis G Bagos, Panagiota I Kontou, Ioannis A Tamposis, 2018, Bioinform..

GWAR: robust analysis and meta‐analysis of genome‐wide association studies

Arne Elofsson, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2017, Bioinform..

Processes Underlying Glycemic Deterioration in Type 2 Diabetes

Konstantinos D. Tsirigos, Jimmy D Bell, O. Pedersen, 2020 .

PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins

Arne Elofsson, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2016, Bioinform..

CW-PRED: A HMM-Based Method for the Classification of Cell Wall-Anchored Proteins of Gram-Positive Bacteria

Stavros J. Hamodrakas, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2012, SETN.

Processes Underlying Glycemic Deterioration in Type 2 Diabetes: An IMI DIRECT Study

Konstantinos D. Tsirigos, Jimmy D Bell, M. McCarthy, 2020, Diabetes Care.

OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria

Stavros J. Hamodrakas, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2010, Nucleic Acids Res..