D. Tabb

发表

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics.

J. Yates, W. McDonald, D. Tabb, 2002, Journal of proteome research.

J. Yates, M. MacCoss, D. Tabb, 2003, Analytical chemistry.

GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model.

J. Yates, D. Tabb, A. Saraf, 2003, Analytical chemistry.

Neurovascular unit on a chip: implications for translational applications

Dmitry A Markov, Lisa J McCawley, Deyu Li, 2013, Stem Cell Research & Therapy.

The influence of histidine on cleavage C-terminal to acidic residues in doubly protonated tryptic peptides

David L. Tabb, John R. Yates, Vicki H. Wysocki, 2002 .

Microbial function and genital inflammation in young South African women at high risk of HIV infection

A. Godzik, N. Mulder, D. Tabb, 2020, bioRxiv.

Protein identification using customized protein sequence databases derived from RNA-Seq data.

Bing Zhang, D. Tabb, R. Slebos, 2012, Journal of proteome research.

Proteogenomic Investigation of Strain Variation in Clinical Mycobacterium tuberculosis Isolates.

A. Pain, D. Tabb, P. V. van Helden, 2017, Journal of proteome research.

TagRecon: high-throughput mutation identification through sequence tagging.

D. Tabb, R. Slebos, A. Ham, 2010, Journal of proteome research.

A Face in the Crowd: Recognizing Peptides Through Database Search*

B. Searle, J. Eng, D. Tabb, 2011, Molecular & Cellular Proteomics.

MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis.

D. Tabb, Matthew Chambers, C. Fernando, 2007, Journal of proteome research.

QuaMeter: multivendor performance metrics for LC-MS/MS proteomics instrumentation.

Lorenzo J. Vega-Montoto, B. Gibson, D. Tabb, 2012, Analytical chemistry.

A Bioinformatics Workflow for Variant Peptide Detection in Shotgun Proteomics*

W. Pao, Bing Zhang, D. Tabb, 2011, Molecular & Cellular Proteomics.

Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides.

J. Yates, D. Tabb, V. Wysocki, 2003, Analytical chemistry.

MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.

John D. Venable, J. Yates, M. MacCoss, 2004, Rapid communications in mass spectrometry : RCM.

MS2Grouper: Group assessment and synthetic replacement of duplicate proteomic tandem mass spectra

W. McDonald, D. Tabb, N. Verberkmoes, 2005, Journal of the American Society for Mass Spectrometry.

Proteomic parsimony through bipartite graph analysis improves accuracy and transparency.

D. Tabb, Matthew Chambers, B. Zhang, 2007, Journal of proteome research.

IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering.

Michael D. Litton, Scott M. Sobecki, B. Gibson, 2009, Journal of proteome research.

Network-assisted protein identification and data interpretation in shotgun proteomics

Bing Zhang, D. Tabb, Jing Li, 2009, Molecular systems biology.

A Cross-platform Toolkit for Mass Spectrometry and Proteomics

Natalie I. Tasman, Jarrett D. Egertson, D. Ruderman, 2012, Nature Biotechnology.

Open search unveils modification patterns in formalin-fixed, paraffin-embedded thermo HCD and SCIEX TripleTOF shotgun proteomes

D. Tabb, J. Blackburn, Brandon D. Murugan, 2020 .

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles)

Richard D. Smith, J. Yates, R. Moritz, 2012, Proteomics.

Tandem mass spectrometry for the detection of plant pathogenic fungi and the effects of database composition on protein inferences

B. Cooper, D. Tabb, W. Garrett, 2007, Proteomics.

Integrated Proteomic and Glycoproteomic Characterization of Human High-Grade Serous Ovarian Carcinoma.

Jeffrey R. Whiteaker, Ratna R. Thangudu, Samuel H. Payne, 2020, Cell reports.

Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry.

D. Tabb, R. Slebos, D. Liebler, 2008, Journal of proteome research.

Proteogenomic characterization of human colon and rectal cancer

Jeffrey R. Whiteaker, S. Carr, M. Ellis, 2014, Nature.

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer

Ronald J. Moore, Samuel H. Payne, Stefani N. Thomas, 2016, Cell.

Efficient and specific trypsin digestion of microgram to nanogram quantities of proteins in organic-aqueous solvent systems.

David L Tabb, Chongle Pan, W Judson Hervey, 2006, Analytical chemistry.

The SEQUEST Family Tree

David L Tabb, D. Tabb, 2015, Journal of The American Society for Mass Spectrometry.

Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics.

David L Tabb, Guruprasad Kora, Chongle Pan, 2006, Analytical chemistry.

Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification.

Johannes Griss, Alexey I Nesvizhskii, David L Tabb, 2016, Analytical chemistry.

In-depth Analysis of Protein Inference Algorithms using a Workflow Framework and Well-Defined Metrics

K. Reinert, H. Hermjakob, O. Kohlbacher, 2017 .

HI-bone: a scoring system for identifying phenylisothiocyanate-derivatized peptides based on precursor mass and high intensity fragment ions.

Juan Antonio Vizcaíno, Henning Hermjakob, Diogo Borges, 2013, Analytical Chemistry.

DirecTag: accurate sequence tags from peptide MS/MS through statistical scoring.

David L Tabb, Matthew C Chambers, Amy-Joan L Ham, 2008, Journal of proteome research.

Influence of basic residue content on fragment ion peak intensities in low-energy collision-induced dissociation spectra of peptides.

John R Yates, David L Tabb, J. Yates, 2004, Analytical chemistry.

A proteomic view of the Plasmodium falciparum life cycle

David L. Tabb, Dirk Wolters, John R. Yates, 2002, Nature.

Determination and comparison of the baseline proteomes of the versatile microbe Rhodopseudomonas palustris under its major metabolic states.

David L Tabb, J. W. Barton, Brian H Davison, 2006, Journal of proteome research.

Characterization of Plant Glycoproteins: Analysis of Plant Glycopeptide Mass Spectrometry Data with plantGlycoMS, a Package in the R Statistical Computing Environment.

Margaret R. Baker, D. Tabb, Qing X. Li, 2018, Methods in molecular biology.

Site-Specific N-Glycosylation Characterization of Windmill Palm Tree Peroxidase Using Novel Tools for Analysis of Plant Glycopeptide Mass Spectrometry Data.

Margaret R. Baker, D. Tabb, Qing X. Li, 2016, Journal of proteome research.

Proteomic analysis of colon and rectal carcinoma using standard and customized databases

David L. Tabb, Daniel C. Liebler, Robbert J.C. Slebos, 2015, Scientific Data.

Comprehensive Characterization of Glycosylation and Hydroxylation of Basement Membrane Collagen IV by High‐Resolution Mass Spectrometry

Lorenzo J. Vega-Montoto, D. Tabb, B. Hudson, 2016, Journal of proteome research.

Challenges and Opportunities for Biological Mass Spectrometry Core Facilities in the Developing World.

D. Tabb, N. Soares, Liam Bell, 2018, Journal of biomolecular techniques : JBT.

Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy

Jeffrey R. Whiteaker, Matthew A. Wyczalkowski, Ratna R. Thangudu, 2020, Cell.

Public infrastructure for cancer biomarker data capture, annotation, analysis, and distribution

Chris Mattmann, Matthew Chambers, David L. Tabb, 2013, AMIA.

MetaNovo: a probabilistic approach to peptide discovery in complex metaproteomic datasets

N. Mulder, A. Nel, D. Tabb, 2019, bioRxiv.

A Serum Circulating miRNA Signature for Short-Term Risk of Progression to Active Tuberculosis Among Household Contacts

Fergal J. Duffy, D. Zak, S. Kaufmann, 2018, Front. Immunol..

Proteomic analysis reveals that sulfamethoxazole induces oxidative stress in M. tuberculosis.

D. Tabb, P. V. van Helden, A. Ngwane, 2018, Tuberculosis.

Informatics of protein and posttranslational modification detection via shotgun proteomics.

Jerry D. Holman, D. Tabb, S. Dasari, 2013, Methods in molecular biology.

Greazy: open-source software for automated phospholipid MS/MS identification

Michael A. Kochen, Jay D. Holman, A. Nesvizhskii, 2015 .

Immunometabolic Signatures Predict Risk of Progression to Active Tuberculosis and Disease Outcome

Daniel E. Zak, Fergal J. Duffy, D. Zak, 2019, Front. Immunol..

, ( iPOND ) Coupled with Mass Spectrometry Isolation of Proteins on Nascent DNA and Collapsed Replication Forks Using Identification of Proteins at Active , Stalled , DNA and Chromosomes

W. McDonald, D. Tabb, D. Cortez, 2013 .

Proteomic analysis of the enterocyte brush border.

D. Tabb, M. Tyska, R. Mcconnell, 2011, American journal of physiology. Gastrointestinal and liver physiology.

Identification and Validation of Novel Spinophilin-associated Proteins in Rodent Striatum Using an Enhanced ex Vivo Shotgun Proteomics Approach*□S

D. Tabb, R. Colbran, A. Ham, 2010 .

Title : A standardized framing for reporting protein identifications in mzIdentML 1

Andrew R. Jones, B. Searle, D. Tabb, 2022 .

SWATH-MS based proteomic profiling of pancreatic ductal adenocarcinoma tumours reveals the interplay between the extracellular matrix and related intracellular pathways

D. Tabb, S. Aron, S. Stoychev, 2020, medRxiv.

Metabolite changes in blood predict the onset of tuberculosis

Michel R. Klein, Jane Hughes, Gerhard Walzl, 2018, Nature Communications.

Chronic intermittent alcohol disrupts the GluN2B‐associated proteome and specifically regulates group I mGlu receptor‐dependent long‐term depression

D. Tabb, R. Colbran, T. Wills, 2017, Addiction biology.

Comparing conventional statistical models and machine learning in a small cohort of South African cardiac patients

D. Tabb, C. Aldous, T. Esterhuizen, 2022, Informatics in Medicine Unlocked.

Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work

Silvio C. E. Tosatto, Andrew R. Jones, Tytus D. Mak, 2023, Journal of proteome research.

Bioinformatics Applications Note Gene Expression Skyline: an Open Source Document Editor for Creating and Analyzing Targeted Proteomics Experiments

Brendan MacLean, Daniela M. Tomazela, Nicholas Shulman, 2022 .

Annealing studies of solution and bulk crystallized polyethylene using the Raman-active longitudinal acoustical vibrational mode

J. Koenig, D. Tabb, 1974 .

Fourier Transform Infrared Study of Plasticized and Unplasticized Poly(vinyl chloride)

J. Koenig, D. Tabb, 1975 .

Employing ProteoWizard to Convert Raw Mass Spectrometry Data

David L Tabb, Parag Mallick, Jerry D. Holman, 2014, Current protocols in bioinformatics.

Comparative Proteomics Analysis between Maize and Sorghum Uncovers Important Proteins and Metabolic Pathways Mediating Drought Tolerance

D. Tabb, N. Ludidi, L. Husselmann, 2023, Life.

What's driving false discovery rates?

David L Tabb, D. Tabb, 2008, Journal of proteome research.

The Evolutionary Imprint of Domestication on Genome Variation and Function of the Filamentous Fungus Aspergillus oryzae

Kriston L. McGary, W. McDonald, D. Tabb, 2012, Current Biology.

Fourier transform infrared study of the effects of irradiation on polyethylene

J. Koenig, D. Tabb, J. Ševčı́k, 1975 .

Use of Fluorescence-activated Vesicle Sorting for Isolation of Naked2-associated, Basolaterally Targeted Exocytic Vesicles for Proteomics Analysis*S

Kristin L Cheek, R. Coffey, D. Tabb, 2008, Molecular & Cellular Proteomics.

Quality control in mass spectrometry-based proteomics.

Lennart Martens, Wout Bittremieux, Kris Laukens, 2018, Mass spectrometry reviews.

A fourier transform infrared spectroscopic study of trans‐1,4‐polychloroprene. A novel method for the determination of the crystalline vibrational bands.

J. Koenig, D. Tabb, P. Painter, 1974 .

Prostate cancer serum biomarker discovery through proteomic analysis of alpha‐2 macroglobulin protein complexes

Dean Billheimer, David L Tabb, Amy-Joan L Ham, 2008, Proteomics. Clinical applications.

The bis-electrophile diepoxybutane cross-links DNA to human histones but does not result in enhanced mutagenesis in recombinant systems.

David L Tabb, F Peter Guengerich, Surendra Dasari, 2009, Chemical research in toxicology.

Refining comparative proteomics by spectral counting to account for shared peptides and multiple search engines

David L. Tabb, Ming Li, Surendra Dasari, 2012, Analytical and Bioanalytical Chemistry.

A Proteomics Analysis of Yeast Mot1p Protein-Protein Associations

David L Tabb, Andrew J Link, M. Slijper, 2008, Molecular & Cellular Proteomics.

Interrogating Fractionation and Other Sources of Variability in Shotgun Proteomes Using Quality Metrics

David L. Tabb, D. Tabb, S. Stoychev, 2020, Proteomics.

An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer*

Li Ding, David L. Tabb, Daniel C. Liebler, 2015, Molecular & Cellular Proteomics.

Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles)*

Richard D Smith, Mark Baker, John R Yates, 2011, Molecular & Cellular Proteomics.

Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities

Subha Madhavan, Peter B. McGarvey, Li Ding, 2019, Cell.

Identification and Validation of Novel Spinophilin-associated Proteins in Rodent Striatum Using an Enhanced ex Vivo Shotgun Proteomics Approach*

D. Tabb, R. Colbran, L. Carmody, 2010, Molecular & Cellular Proteomics.

Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry.

Birgit Schilling, Lisa J Zimmerman, Christopher R Kinsinger, 2010, Journal of proteome research.

The Human Proteome Organization-Proteomics Standards Initiative Quality Control Working Group: Making Quality Control More Accessible for Biological Mass Spectrometry.

Martin Eisenacher, Wout Bittremieux, Mathias Walzer, 2017, Analytical chemistry.

Performance Metrics for Liquid Chromatography-Tandem Mass Spectrometry Systems in Proteomics Analyses*

David L. Tabb, Daniel C. Liebler, Stephen E. Stein, 2009, Molecular & Cellular Proteomics.

Identification of Proteins at Active, Stalled, and Collapsed Replication Forks Using Isolation of Proteins on Nascent DNA (iPOND) Coupled with Mass Spectrometry*

W. McDonald, D. Tabb, D. Cortez, 2013, The Journal of Biological Chemistry.

Sipros Ensemble improves database searching and filtering for complex metaproteomics

Zhou Li, David L. Tabb, Qiuming Yao, 2017, Bioinform..

Mapping serum albumin adducts of the food-borne carcinogen 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine by data-dependent tandem mass spectrometry.

D. Tabb, S. Dasari, R. Turesky, 2012, Chemical research in toxicology.

Sequence tagging reveals unexpected modifications in toxicoproteomics.

David L Tabb, Matthew C Chambers, Ben C Collins, 2011, Chemical research in toxicology.

Proteomic analysis of Chinese hamster ovary cells.

Yuan Tian, Bernhard O Palsson, Harish Nagarajan, 2012, Journal of proteome research.

The enterocyte microvillus is a vesicle-generating organelle

David L. Tabb, Russell E. McConnell, Matthew J. Tyska, 2009, The Journal of cell biology.

Proteomic Identification and Meta-Analysis in Salvia hispanica RNA-Seq de novo Assemblies

B. Cooper, Brent Ragar, D. Tabb, 2021, Plants.

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

Christoph H Borchers, Birgit Schilling, Michael P. Cusack, 2009, Nature Biotechnology.

Proteomics Standards Initiative: Fifteen Years of Progress and Future Work

Martin Eisenacher, Wout Bittremieux, Yasset Perez-Riverol, 2017, Journal of proteome research.

In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.

Martin Eisenacher, Yasset Perez-Riverol, Knut Reinert, 2017, Journal of proteomics.

Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts

David L. Tabb, Daniel C. Liebler, Bing Zhang, 2015, Journal of proteome research.

Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer.

Vineet Bafna, Pavel A Pevzner, David L Tabb, 2015, Journal of proteome research.

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets

Johannes Griss, Yasset Perez-Riverol, Juan Antonio Vizcaíno, 2016, Nature Methods.

Large-scale protein identification using mass spectrometry.

John R Yates, David L Tabb, Dayin Lin, 2003, Biochimica et biophysica acta.

Dysregulated healing responses in diabetic wounds occur in the early stages post injury.

D. Tabb, K. Myburgh, M. van de Vyver, 2020, Journal of molecular endocrinology.

Interlaboratory Study Characterizing a Yeast Performance Standard for Benchmarking LC-MS Platform Performance*

Birgit Schilling, Lisa J Zimmerman, Christopher R Kinsinger, 2009, Molecular & Cellular Proteomics.

Corrigendum: Proteomic analysis of colon and rectal carcinoma using standard and customized databases

Xiaojing Wang, David L. Tabb, Daniel C. Liebler, 2015, Scientific Data.

Infrared Spectra of Globular Proteins in Aqueous Solution

J. Koenig, D. Tabb, 1980 .

proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data*

David L. Tabb, Daniel C. Liebler, Xiaojing Wang, 2015, Molecular & Cellular Proteomics.

Targeted next-generation sequencing identifies novel variants in candidate genes for Parkinson’s disease in Black South African and Nigerian patients

D. Tabb, S. Bardien, H. Kuivaniemi, 2020, BMC Medical Genetics.

Correcting systematic bias and instrument measurement drift with mzRefinery

Matthew Chambers, David L. Tabb, Matthew E. Monroe, 2015, Bioinform..

Microbial function and genital inflammation in young South African women at high risk of HIV infection

D. Tabb, L. Bekker, H. Jaspan, 2020, Microbiome.

A Label-Free Proteomic and Complementary Metabolomic Analysis of Leaves of the Resurrection Plant Xerophyta schlechteri during Dehydration

D. Tabb, M. S. Rafudeen, J. Farrant, 2021, Life.

Cleavage N-terminal to proline: analysis of a database of peptide tandem mass spectra.

John R Yates, David L Tabb, J. Yates, 2003, Analytical chemistry.

Enabling proteomics-based identification of human cancer variations

Jing Li, David L. Tabb, Daniel C. Liebler, 2010, BMC Bioinformatics.

Progression to active Tuberculosis among household contacts

Fergal J. Duffy, D. Zak, S. Kaufmann, 2018 .

Open search algorithms discover patterns of chemical modifications via LC-MS/MS

D. Tabb, Brandon D. Murugan, 2022, Advances in Chemical Proteomics.

Verification of automated peptide identifications from proteomic tandem mass spectra

David L Tabb, Amy-Joan L Ham, David B Friedman, 2006, Nature Protocols.

Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment.

David L Tabb, Surendra Dasari, Matthew C Chambers, 2012, Journal of proteome research.

Automated discrimination of polymerase chain reaction products with closely related sequences by software-based detection of characteristic peaks in product ion spectra.

A. Fox, K. Fox, D. Tabb, 2003, Rapid communications in mass spectrometry : RCM.

ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.

N. Samatova, G. Hurst, R. Hettich, 2006, Analytical chemistry.

The 2012/2013 ABRF Proteomic Research Group Study: Assessing Longitudinal Intralaboratory Variability in Routine Peptide Liquid Chromatography Tandem Mass Spectrometry Analyses*

David L. Tabb, Keiryn L. Bennett, Robert L. Moritz, 2015, Molecular & Cellular Proteomics.

Protein Identification by SEQUEST

David L. Tabb, John R. Yates, Jimmy K. Eng, 2001 .

Gaussian process modelling for improved resolution in Faraday depth reconstruction

A. Scaife, D. Tabb, A. M. Scaife, 2021, Monthly Notices of the Royal Astronomical Society.

Obesity and altered glucose metabolism impact HDL composition in CETP transgenic mice: a role for ovarian hormones[S]

W. McDonald, D. Tabb, Ke Wu, 2012, Journal of Lipid Research.

Wavelet-Based Peak Detection and a New Charge Inference Procedure for MS/MS Implemented in ProteoWizard’s msConvert

David L. Tabb, Birgit Schilling, Bradford W. Gibson, 2014, Journal of proteome research.

Phosphoproteomics reveals new insights into the role of PknG during the persistence of pathogenic mycobacteria in host macrophages

D. Tabb, N. Soares, J. Blackburn, 2021, bioRxiv.

Differential Localization and Dynamics of Class I Myosins in the Enterocyte Microvillus

D. Tabb, M. Tyska, R. Nambiar, 2010, Molecular biology of the cell.

Evaluating protein interactions through cross-linking mass spectrometry

David L Tabb, D. Tabb, 2012, Nature Methods.

Corrigendum: Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

Christoph H Borchers, Jing Li, Birgit Schilling, 2009, Nature Biotechnology.

Host blood RNA signatures predict the outcome of tuberculosis treatment

Gerard Tromp, David L. Tabb, Smitha Shankar, 2017, Tuberculosis.

A Laboratory-Targeted, Data Management and Processing System for the Early Detection Research Network

Chris Mattmann, Rishi Verma, Matthew Chambers, 2014, 2014 IEEE 27th International Symposium on Computer-Based Medical Systems.

QC Metrics from CPTAC Raw LC-MS/MS Data Interpreted through Multivariate Statistics

David L. Tabb, Stephen E. Stein, Matthew C. Chambers, 2014, Analytical chemistry.

13C NMR Characterization of Polychloroprene Microstructure I. Spectral Assignments

D. Tabb, M. Coleman, E. Brame, 1977 .

IDPQuantify: combining precursor intensity with spectral counts for protein and peptide quantification.

David L Tabb, J. L. Turner, Matthew C Chambers, 2013, Journal of proteome research.

Determination of peptide and protein ion charge states by fourier transformation of isotope-resolved mass spectra

David L Tabb, Manesh B Shah, G. Hurst, 2006, Journal of the American Society for Mass Spectrometry.

MASPIC: intensity-based tandem mass spectrometry scoring scheme that improves peptide identification at high confidence.

David L Tabb, Chandrasegaran Narasimhan, Edward C Uberbacher, 2005, Analytical chemistry.

Synthesis of the 3‐methyl and 4‐methyl derivatives of 3‐amino‐3,4‐dihydro‐1‐hydroxycarbostyril and related compounds

D. Tabb, A. L. Davis, T. J. McCord, 1980 .

MS for identification of single nucleotide polymorphisms and MS/MS for discrimination of isomeric PCR products.

J. Yates, A. Fox, K. Fox, 2000, Analytical chemistry.

Quality assessment for clinical proteomics.

David L Tabb, D. Tabb, 2013, Clinical biochemistry.

The synthesis, configuration, and conformation of cis‐ and trans‐3‐amino‐3,4‐dihydro‐1‐hydroxy‐4‐methylcarbostyrils and other configurationally related compounds

D. Tabb, A. L. Davis, T. J. McCord, 1981 .

The enterocyte microvillus is a vesicle-generating organelle

R. Coffey, D. Tabb, M. Tyska, 2009, The Journal of cell biology.

Bioinformatics and Database Searching

David L. Tabb, Surendra Dasari, D. Tabb, 2011 .

Characterization of the 70S Ribosome from Rhodopseudomonas palustris using an integrated "top-down" and "bottom-up" mass spectrometric approach.

David L Tabb, J. W. Barton, Brian H Davison, 2004, Journal of proteome research.

Quality Assessments of Long-Term Quantitative Proteomic Analysis of Breast Cancer Xenograft Tissues.

Chen, Li, Christopher R Kinsinger, 2017, Journal of proteome research.

Comparing Top-Down Proteoform Identification: Deconvolution, PrSM Overlap, and PTM Detection

Sneha P. Couvillion, Kyle A. Brown, D. Tabb, 2023, Journal of proteome research.

Identifying Proteomic LC‐MS/MS Data Sets with Bumbershoot and IDPicker

Jerry D. Holman, D. Tabb, Ze-Qiang Ma, 2012, Current protocols in bioinformatics.

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles).

Richard D Smith, Mark Baker, John R Yates, 2012, Journal of proteome research.

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles)

Richard D Smith, John R Yates, Henning Hermjakob, 2011, Proteomics. Clinical applications.

ScanRanker: Quality assessment of tandem mass spectra via sequence tagging.

Birgit Schilling, David L Tabb, Matthew C Chambers, 2010, Journal of proteome research.

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

Michael P. Cusack, Susan E. Abbatiello, Jeffrey R. Whiteaker, 2009, Nature Biotechnology.

TagRecon: high-throughput mutation identification through sequence tagging.

D. Tabb, R. Slebos, A. Ham, 2010, Journal of proteome research.

TopDownApp: An open and modular platform for analysis and visualisation of top-down proteomics data.

D. Tabb, J. Vizcaíno, Mathias Walzer, 2023, Proteomics.

Identifying Proteomic LC‐MS/MS Data Sets with Bumbershoot and IDPicker

Jerry D. Holman, D. Tabb, Ze-Qiang Ma, 2012, Current protocols in bioinformatics.