D. Vafeados

发表

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

Raymond K. Auerbach, Kevin Y. Yip, Stefan R. Henz, 2010, Science.

The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors

Mark Gerstein, Koon-Kiu Yan, Valerie Reinke, 2017, Genetics.

Regulatory analysis of the C. elegans genome with spatiotemporal resolution

Daniel L. Mace, Dan Xie, A. Kundaje, 2014, Nature.

Multidimensional regulation of gene expression in the C. elegans embryo

R. Waterston, E. Preston, J. Murray, 2012, Genome research.

The Arabidopsis det3 mutant reveals a central role for the vacuolar H(+)-ATPase in plant growth and development.

J. Chory, D. Vafeados, K. Schumacher, 1999, Genes & development.

Improving de novo protein binder design with deep learning

S. Savvides, D. Vafeados, Inna Goreshnik, 2022, bioRxiv.

BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis

Ana I. Caño-Delgado, J. Chory, D. Vafeados, 2004, Development.

Nuclear-localized BZR1 mediates brassinosteroid-induced growth and feedback suppression of brassinosteroid biosynthesis.

J. Chory, D. Vafeados, Meng Chen, 2002, Developmental cell.

BIN2, a new brassinosteroid-insensitive locus in Arabidopsis.

J. Chory, D. Vafeados, Jianming Li, 2001, Plant physiology.

Comparative analysis of regulatory information and circuits across distant species

Peter J. Bickel, Mark Gerstein, Philip Cayting, 2014, Nature.

A New Class of Transcription Factors Mediates Brassinosteroid-Regulated Gene Expression in Arabidopsis

J. Chory, D. Vafeados, S. Yoshida, 2005, Cell.

modENCODE Project Genome by the Caenorhabditis elegans Integrative Analysis of the

Raymond K. Auerbach, Kevin Y. Yip, Stefan R. Henz, 2011 .

BIN 2 , a New Brassinosteroid-Insensitive Locus in Arabidopsis 1

J. Chory, D. Vafeados, Jianming Li, 2001 .

Alteration of stimulus-specific guard cell calcium oscillations and stomatal closing in Arabidopsis det3 mutant.

R Y Tsien, J Chory, R. Tsien, 2000, Science.

Designed Endocytosis-Triggering Proteins mediate Targeted Degradation

Craig L. Dobbins, Jamie B. Spangler, Kole T. Roybal, 2023, bioRxiv.

Computational design of sequence-specific DNA-binding proteins

R. Gordân, L. Doyle, Wei Chen, 2023, bioRxiv.

Small-molecule binding and sensing with a designed protein family

D. Vafeados, Inna Goreshnik, Hugh K. Haddox, 2023, bioRxiv.

Generalized Biomolecular Modeling and Design with RoseTTAFold All-Atom

D. Vafeados, I. Anishchenko, Jue Wang, 2023, bioRxiv.

Atomically accurate de novo design of single-domain antibodies

D. Vafeados, Inna Goreshnik, Andrew J. Borst, 2024, bioRxiv.