D. McRee

发表

Practical Protein Crystallography

D. McRee, 1993 .

A ligand-gated, hinged loop rearrangement opens a channel to a buried artificial protein cavity

M. M. Fitzgerald, D. McRee, D. Goodin, 1996, Nature Structural Biology.

Structural snapshots of human HDAC8 provide insights into the class I histone deacetylases.

J. R. Somoza, D. McRee, Biching Sang, 2004, Structure.

Crystal Structures of Active Fully Assembled Substrate- and Product-Bound Complexes of UDP-N-Acetylmuramic Acid:l-Alanine Ligase (MurC) from Haemophilus influenzae

D. McRee, C. Mol, R. Swanson, 2003, Journal of bacteriology.

Variation in strength of an unconventional C-H to O hydrogen bond in an engineered protein cavity

D. McRee, D. Goodin, R. Musah, 1997 .

Structural Basis for Iron Binding and Release by a Novel Class of Periplasmic Iron-Binding Proteins Found in Gram-Negative Pathogens

D. McRee, A. Schryvers, R. Skene, 2004, Journal of bacteriology.

Prospects for High-Throughput Structure Determination by X-Ray Crystallography

Frank von Delft, D. McRee, F. Delft, 2003 .

Understanding the structure and antigenicity of gonococcal pili.

J. Tainer, E. Getzoff, D. McRee, 1988, Reviews of infectious diseases.

Small molecule binding to an artificially created cavity at the active site of cytochrome c peroxidase.

M. M. Fitzgerald, David B. Goodin, Michael J. Churchill, 1994, Biochemistry.

Self-assembling organic nanotubes based on a cyclic peptide architecture

Juan R. Granja, Ronald A. Milligan, M. Ghadiri, 1993, Nature.

Novel Anion-independent Iron Coordination by Members of a Third Class of Bacterial Periplasmic Ferric Ion-binding Proteins*

D. McRee, A. Schryvers, D. Dougan, 2005, Journal of Biological Chemistry.

Crystallographic and biochemical analyses of the metal-free Haemophilus influenzae Fe3+-binding protein.

D. McRee, P. Williams, T. Mietzner, 2001, Biochemistry.

Presence of ferric hydroxide clusters in mutants of Haemophilus influenzae ferric ion-binding protein A.

D. McRee, A. Schryvers, R. Skene, 2003, Biochemistry.

Electric fields in active sites: substrate switching from null to strong fields in thiol- and selenol-subtilisins.

D. Hilvert, D. Dinakarpandian, D. McRee, 1999, Biochemistry.

Insights into selectivity of STI571 [GleevecTM] from X-ray crystallography

K. Wilson, D. McRee, Devon A. Thompson, 2003 .

A copper(I)-catalyzed 1,2,3-triazole azide-alkyne click compound is a potent inhibitor of a multidrug-resistant HIV-1 protease variant.

B. Torbett, Chi‐Huey Wong, D. McRee, 2008, Journal of medicinal chemistry.

The role of aspartate‐235 in the binding of cations to an artificial cavity at the radical site of cytochrome c peroxidase

M. M. Fitzgerald, D. McRee, D. Goodin, 1995, Protein science : a publication of the Protein Society.

Laue diffraction protein crystallography at the National Synchrotron Light Source

Keith W. Jones, K. Moffat, E. Getzoff, 1993 .

XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density.

D E McRee, D. McRee, 1999, Journal of structural biology.

Structural basis for the inhibition of Aurora A kinase by a novel class of high affinity disubstituted pyrimidine inhibitors.

D. McRee, J. Nix, R. Swanson, 2006, Bioorganic & medicinal chemistry letters.

Haemophilus influenzae Acid : l-Alanine Ligase ( MurC ) from-Acetylmuramic N Complexes of UDP-Assembled Substrate-and Product-Bound Crystal Structures of Active Fully

D. McRee, C. Mol, R. Swanson, 2003 .

High-resolution crystal structures and spectroscopy of native and compound I cytochrome c peroxidase.

T. Poulos, D. McRee, D. Goodin, 2003, Biochemistry.

A Water Molecule Residing in the Fea33+···CuB2+ Dinuclear Center of the Resting Oxidized as-Isolated Cytochrome c Oxidase: A Density Functional Study

D. McRee, Louis Noodleman, A. Götz, 2020, Inorganic chemistry.

6 – CRYOCRYSTALLOGRAPHY: BASIC THEORY AND METHODS

P. R. David, D. McRee, 1999 .

Changes in crystallographic structure and thermostability of a Cu,Zn superoxide dismutase mutant resulting from the removal of a buried cysteine.

J. Tainer, E. Getzoff, D. McRee, 1993, The Journal of biological chemistry.

[Computer model of 3D structure of cytochrome P450 2B4].

Vladlen S. Skvortsov, D. McRee, A. Archakov, 2002, Voprosy meditsinskoi khimii.

Crystallographic characterization of a Cu,Zn superoxide dismutase from Photobacterium leiognathi.

J. Tainer, E. Getzoff, D. McRee, 1990, Journal of molecular biology.

Preliminary X-ray diffraction studies of acyl carrier protein from Escherichia coli.

J. Richardson, D. Richardson, D. McRee, 1985, Journal of molecular biology.

Preliminary X-ray diffraction studies on the hemoprotein subunit of Escherichia coli sulfite reductase.

D. Richardson, D. McRee, 1982, Journal of molecular biology.

5 – PROTEIN CRYSTALLOGRAPHY COOKBOOK

P. R. David, D. McRee, 1999 .

Reduction in diffuso‐convective disturbances in nanovolume protein crystallization experiments

R. Stevens, E. Abola, D. McRee, 2005 .

A fully integrated protein crystallization platform for small-molecule drug discovery.

Daniel Scheibe, David Hosfield, John Palan, 2003, Journal of structural biology.

The Asp-His-Fe triad of cytochrome c peroxidase controls the reduction potential, electronic structure, and coupling of the tryptophan free radical to the heme.

D. McRee, D. Goodin, 1993, Biochemistry.

Cu, Zn and Mn superoxide dismutases; Crystal structures, mutants, and function

G. Borgstahl, J. Tainer, E. Getzoff, 1993 .

Magnetic circular dichroism studies of the active site heme coordination sphere of exogenous ligand-free ferric cytochrome c peroxidase from yeast: effects of sample history and pH.

D. McRee, D. Goodin, J. Dawson, 1999, Journal of inorganic biochemistry.

Refined crystal structure of Cd, Zn metallothionein at 2.0Åresolution

N. Xuong, S. Collett, D. McRee, 1991 .

Mechanism and atomic structure of superoxide dismutase.

J. Tainer, E. Getzoff, V. Roberts, 1991, Free radical research communications.

Living with metal ions

D. McRee, 1998, Nature Structural Biology.

High Resolution Structure of an Alternate Form of the Ferric Ion Binding Protein from Haemophilus influenzae *

D. McRee, A. Schryvers, R. Skene, 2003, The Journal of Biological Chemistry.

Oxidized and reduced Azotobacter vinelandii ferredoxin I at 1.4 A resolution: conformational change of surface residues without significant change in the [3Fe-4S]+/0 cluster.

D E McRee, D B Goodin, D. McRee, 1999, Biochemistry.

Structure of Azotobacter vinelandii 7Fe ferredoxin at 1.35 A resolution and determination of the [Fe-S] bonds with 0.01 A accuracy.

D. McRee, C. Stout, E. Stura, 1998, Journal of molecular biology.

The Structural and Thermodynamic Basis for the Formation of Self‐Assembled Peptide Nanotubes

Kenji Kobayashi, Juan R. Granja, M. Ghadiri, 1995 .

Nanoscale Tubular Ensembles with Specified Internal Diameters. Design of a Self-Assembled Nanotube with a 13-.ANG. Pore

Juan R. Granja, Ronald A. Milligan, M. Ghadiri, 1994 .

Construction of a bisaquo heme enzyme and binding by exogenous ligands.

M. M. Fitzgerald, D E McRee, D B Goodin, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Structure of Haemophilus influenzae Fe+3-binding protein reveals convergent evolution within a superfamily

D. McRee, M. McTigue, A. Arvai, 1997, Nature Structural Biology.

Structure of a c-Kit Product Complex Reveals the Basis for Kinase Transactivation*

E. Chien, D. Kassel, D. McRee, 2003, Journal of Biological Chemistry.

Microsomal cytochrome P450 2C5: comparison to microbial P450s and unique features.

D E McRee, D. McRee, P. Williams, 2000, Journal of inorganic biochemistry.

Mammalian microsomal cytochrome P450 monooxygenase: structural adaptations for membrane binding and functional diversity.

D E McRee, D. McRee, P. Williams, 2000, Molecular cell.

Small molecule binding to an artificially created cavity at the active site of cytochrome c peroxidase.

M. M. Fitzgerald, D. McRee, D. Goodin, 1994, Biochemistry.

Coupled transport of electrons and protons in a bacterial cytochrome c oxidase-DFT calculated properties compared to structures and spectroscopies.

D. McRee, Louis Noodleman, Ying Chen, 2020, Physical chemistry chemical physics : PCCP.

Structure of a Protein Photocycle Intermediate by Millisecond Time-Resolved Crystallography

Wilfried Schildkamp, Elizabeth D. Getzoff, Keith Moffat, 1997, Science.

Primary structure of a photoactive yellow protein from the phototrophic bacterium Ectothiorhodospira halophila, with evidence for the mass and the binding site of the chromophore

K. Hellingwerf, D. McRee, J. V. Van Beeumen, 1993, Protein science : a publication of the Protein Society.

Self-assembling organic nanotubes based on a cyclic peptide architecture

Juan R. Granja, Ronald A. Milligan, D. McRee, 1994, Nature.

Structures of the cancer-related Aurora-A, FAK, and EphA2 protein kinases from nanovolume crystallography.

Duncan E McRee, D. McRee, Devon A. Thompson, 2002, Structure.

A visual protein crystallographic software system for X11/Xview

D. McRee, DuncanE. McRee, 1992 .

Refined crystal structure of Cd, Zn metallothionein at 2.0 A resolution.

N. Xuong, B. Wang, S. Collett, 1991, Journal of molecular biology.

Crystal structure of Aplysia ADP ribosyl cyclase, a homologue of the bifunctional ectozyme CD38

D. McRee, D. Levitt, C. Stout, 1996, Nature Structural Biology.

Recombinant Cytochrome rC 557 Obtained from Escherichia coli Cells Expressing a TruncatedThermus thermophilus cycA Gene

D. McRee, A. Pastuszyn, J. Fee, 2001, The Journal of Biological Chemistry.

Integrity of thermus thermophilus cytochrome c552 Synthesized by escherichia coli cells expressing the host‐specific cytochrome c maturation genes, ccmABCDEFGH: Biochemical, spectral, and structural characterization of the recombinant protein

M. Hill, D. McRee, J. Fee, 2000, Protein science : a publication of the Protein Society.

3 – COMPUTATIONAL TECHNIQUES

Duncan E. McRee, D. McRee, 1993 .

Atomic structure of the DNA repair [4Fe-4S] enzyme endonuclease III.

J. Tainer, D. McRee, C. Kuo, 1992, Science.

The crystal structure of lysin, a fertilization protein.

D. McRee, A. Shaw, C. Stout, 1993, Science.

Protein conformer selection by ligand binding observed with crystallography

Sheri K. Wilcox, D. McRee, D. Goodin, 1998, Protein science : a publication of the Protein Society.

Rational design of a functional metalloenzyme: introduction of a site for manganese binding and oxidation into a heme peroxidase.

D E McRee, D B Goodin, M. Sastry, 1998, Biochemistry.

The heme and Fe4S4 cluster in the crystallographic structure of Escherichia coli sulfite reductase.

J. Richardson, D. Richardson, D. McRee, 1986, The Journal of biological chemistry.

Crystal structure of dUTP pyrophosphatase from feline immunodeficiency virus

D. McRee, C. Stout, E. Stura, 1996, Protein science : a publication of the Protein Society.

1 – LABORATORY TECHNIQUES

D. McRee, 1993 .

XtalView, protein structure solution and protein graphics, a short history.

Mark Israel, Duncan E McRee, D. McRee, 2008, Journal of structural biology.

Crystallization and crystallographic characterization of the iron-sulfur-containing DNA-repair enzyme endonuclease III from Escherichia coli.

J. Tainer, D. McRee, C. Kuo, 1992, Journal of molecular biology.

Recombinant Cytochrome rC557 Obtained from Escherichia coli Cells Expressing a Truncated Thermus thermophilus cycA Gene HEME INVERSION IN AN IMPROPERLY MATURED PROTEIN*

D. McRee, A. Pastuszyn, J. Fee, 2001 .

Crystallographic structure of a photoreceptor protein at 2.4 A resolution.

D E McRee, J. Tainer, E. Getzoff, 1989, Proceedings of the National Academy of Sciences of the United States of America.

Intracellular Localization of Two Enzymes Involved in Coumarin Biosynthesis in Melilotus alba.

D. McRee, J. Poulton, E. Conn, 1980, Plant physiology.

Biochemical purification and crystallographic characterization of the fiber-forming protein pilin from Neisseria gonorrhoeae.

J. Tainer, E. Getzoff, D. McRee, 1990, The Journal of biological chemistry.

Alanyl-tRNA synthetase crystal structure and design for acceptor-stem recognition.

Duncan E McRee, D. McRee, L. Ribas de Pouplana, 2004, Molecular cell.

of X - ray and OpticalApparatusFor Time ResolvedCrystallography

E. Getzoff, D. McRee, R. Sweet, 2005 .

Time-resolved crystallography: principles, problems and practice

Elizabeth D. Getzoff, Kingman Ng, H. K. Moffatt, 1992, Philosophical Transactions of the Royal Society of London. Series A: Physical and Engineering Sciences.

Crystal structure of a human aminoacyl-tRNA synthetase cytokine

D. McRee, R. Skene, P. Schimmel, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Conformational flexibility in the flap domains of ligand-free HIV protease.

B. Torbett, D. McRee, R. Rosenfeld, 2007, Acta crystallographica. Section D, Biological crystallography.

Crystal Structure of Pasteurella haemolytica Ferric Ion-binding Protein A Reveals a Novel Class of Bacterial Iron-binding Proteins*

Leslie W. Tari, Stephen R. Shouldice, D. McRee, 2003, Journal of Biological Chemistry.

Differential evolution for protein crystallographic optimizations.

D. McRee, 2004, Acta crystallographica. Section D, Biological crystallography.

Crystal structures that suggest late development of genetic code components for differentiating aromatic side chains

Duncan E McRee, D. McRee, L. Ribas de Pouplana, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Reappraisal of the inhibitory effect of certain sugars used as osmotica on phenylalanine ammonia-lyase activity

J. W. McClure, J. Saunders, D. McRee, 1980 .

Two conformations of a crystalline human tRNA synthetase–tRNA complex: implications for protein synthesis

P. Schimmel, K. Ewalt, D. McRee, 2006, The EMBO journal.

Three dimensional structure of bacterial pili

J. Tainer, E. Getzoff, D. McRee, 2004, Antonie van Leeuwenhoek.

Crystallographic characterization of a photoactive yellow protein with photochemistry similar to sensory rhodopsin.

E. Getzoff, D. McRee, T. Meyer, 1986, The Journal of biological chemistry.

The Crystal Structure of Shikimate Dehydrogenase (AroE) Reveals a Unique NADPH Binding Mode

F. von Delft, D. McRee, R. Swanson, 2003, Journal of bacteriology.

The CuA domain of Thermus thermophilus ba3-type cytochrome c oxidase at 1.6 Å resolution

H. Bellamy, D. McRee, E. Stura, 1999, Nature Structural Biology.

Functional and crystal structure analysis of active site adaptations of a potent anti-angiogenic human tRNA synthetase.

M. Kapoor, K. Ewalt, D. McRee, 2007, Structure.

Crystal Structure of an EMAP-II-Like Cytokine Released from a Human tRNA Synthetase

D. McRee, R. Skene, Xiang-Lei Yang, 2003 .

High-resolution structure of the soluble, respiratory-type Rieske protein from Thermus thermophilus: analysis and comparison.

A. Heine, D. McRee, C. Stout, 2003, Biochemistry.

Purification, crystallization and space group determination of DNA repair enzyme exonuclease III from E. coli.

J. Tainer, D. McRee, C. Kuo, 1993, Journal of molecular biology.

THE CUA DOMAIN OF CYTOCHROME BA3 FROM THERMUS THERMOPHILUS

H. Bellamy, D. McRee, E. Stura, 1999 .

Fragment‐Based Screen against HIV Protease

J. E. Elder, A. Olson, D. McRee, 2010, Chemical biology & drug design.

Ferric Binding Proteins

D. McRee, 2002 .