A. Oellrich

发表

Text-mining solutions for biomedical research: enabling integrative biology

D. Rebholz-Schuhmann, A. Oellrich, R. Hoehndorf, 2012, Nature Reviews Genetics.

Disease insights through cross-species phenotype comparisons

Julius O. B. Jacobsen, Matthew H. Brush, S. Lewis, 2015, Mammalian Genome.

Improved exome prioritization of disease genes through cross-species phenotype comparison

Damian Smedley, Sebastian Bauer, Melissa Haendel, 2014, Genome research.

Finding Our Way through Phenotypes

Laura M. Jackson, Paula M. Mabee, Carolyn J. Lawrence, 2015, PLoS biology.

Characterisation of mental health conditions in social media using Informed Deep Learning

R. Dobson, Maria Liakata, S. Velupillai, 2017, Scientific Reports.

Finding our way through phenotypes. PLoS Biology 13(1): e1002033.

M. Ashburner, H. Parkinson, Barry Smith, 2015 .

Program Committee Additional Reviewers Authoring and Publishing of Units and Quantities in Semantic Documents Exploring the Generation and Integration of Publishable Scientific Facts Using the Concept of Nano-publications a Framework for Semantic Publishing of Modular Content Objects Baudenkmalnetz

D. Rebholz-Schuhmann, Maria Liakata, A. Clare, 2022 .

Finding Our Way Through Phenotypes

Laura M. Jackson, Paula M. Mabee, Katja C. Seltmann, 2019 .

Perspective Finding Our Way through Phenotypes

Laura M. Jackson, Paula M. Mabee, Katja C. Seltmann, 2014 .

Tools for exploring mouse models of human disease

S. Lewis, D. Smedley, C. Mungall, 2016 .

The influence of disease categories on gene candidate predictions from model organism phenotypes

Damian Smedley, Peter N. Robinson, Chris Mungall, 2014, Journal of Biomedical Semantics.

Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug Repurposing

Paul N. Schofield, Robert Hoehndorf, Georgios V. Gkoutos, 2011, Pacific Symposium on Biocomputing.

Disease insights through cross-species phenotype comparisons

Julius O. B. Jacobsen, Matthew H. Brush, Peter N. Robinson, 2015, Mammalian Genome.

Reporting phenotypes in mouse models when considering body size as a potential confounder

Jacqueline K. White, N. Karp, T. Meehan, 2016, J. Biomed. Semant..

Multi-label Annotation in Scientific Articles - The Multi-label Cancer Risk Assessment Corpus

Maria Liakata, James Ravenscroft, Anika Oellrich, 2016, LREC.

Toward knowledge support for analysis and interpretation of complex traits

T. Groza, Nigel Collier, A. Oellrich, 2013, Genome Biology.

PhenoDigm: analyzing curated annotations to associate animal models with human diseases

Damian Smedley, Peter N. Robinson, Chris Mungall, 2013, Database J. Biol. Databases Curation.

The digital revolution in phenotyping

Olivier Bodenreider, Michel Dumontier, Hongfang Liu, 2015, Briefings Bioinform..

Linking gene expression to phenotypes via pathway information

D. Smedley, A. Oellrich, I. Papatheodorou, 2015, J. Biomed. Semant..

Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop

Karin M. Verspoor, N. Shah, L. Soldatova, 2016, Journal of Biomedical Semantics.

Special issue on bio-ontologies and phenotypes

Karin M. Verspoor, N. Shah, L. Soldatova, 2015, Journal of Biomedical Semantics.

Linking tissues to phenotypes using gene expression profiles

Damian Smedley, Anika Oellrich, D. Smedley, 2014, Database J. Biol. Databases Curation.

Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop

Michel Dumontier, Karin M. Verspoor, Nigel Collier, 2016, Journal of Biomedical Semantics.

Special issue on bio-ontologies and phenotypes

Michel Dumontier, Karin M. Verspoor, Nigel Collier, 2015, Journal of Biomedical Semantics.

Concept selection for phenotypes and diseases using learn to rank

T. Groza, Nigel Collier, A. Oellrich, 2015, J. Biomed. Semant..

The influence of disease categories on gene candidate predictions from model organism phenotypes

S. Lewis, D. Smedley, S. Köhler, 2014, J. Biomed. Semant..

Automatic concept recognition using the Human Phenotype Ontology reference and test suite corpora

Nigel Collier, Tudor Groza, Damian Smedley, 2015, Database J. Biol. Databases Curation.

PhenoMiner: from text to a database of phenotypes associated with OMIM diseases

Dietrich Rebholz-Schuhmann, Nigel Collier, Tudor Groza, 2015, Database J. Biol. Databases Curation.

Learning to Recognize Phenotype Candidates in the Auto-Immune Literature Using SVM Re-Ranking

Nigel Collier, Quang-Thuy Ha, Anika Oellrich, 2013, PloS one.

Interoperability between Biomedical Ontologies through Relation Expansion, Upper-Level Ontologies and Automatic Reasoning

Michel Dumontier, Paul N. Schofield, Robert Hoehndorf, 2011, PloS one.

Generation of Silver Standard Concept Annotations from Biomedical Texts with Special Relevance to Phenotypes

Nigel Collier, Tudor Groza, Damian Smedley, 2015, PloS one.

Concept selection for phenotypes and disease-related annota-tions using support vector machines

Tudor Groza, Anika Oellrich, Nigel Collier, 2014 .

Interoperability between phenotype and anatomy ontologies

Dietrich Rebholz-Schuhmann, Robert Hoehndorf, Anika Oellrich, 2010, Bioinform..

Relations as patterns: bridging the gap between OBO and OWL

Michel Dumontier, Dietrich Rebholz-Schuhmann, Robert Hoehndorf, 2010, BMC Bioinformatics.

A gene expression resource generated by genome-wide lacZ profiling in the mouse

N. Karp, R. Ramirez-Solis, D. Smedley, 2015, Disease Models & Mechanisms.

Improving Disease Gene Prioritization by Comparing the Semantic Similarity of Phenotypes in Mice with Those of Human Diseases

Dietrich Rebholz-Schuhmann, Robert Hoehndorf, Georgios V. Gkoutos, 2012, PloS one.

Don’t Let Notes Be Misunderstood: A Negation Detection Method for Assessing Risk of Suicide in Mental Health Records

Maria Liakata, Sumithra Velupillai, George Gkotsis, 2016, CLPsych@HLT-NAACL.

A common layer of interoperability for biomedical ontologies based on OWL EL

Michel Dumontier, Dietrich Rebholz-Schuhmann, Paul N. Schofield, 2011, Bioinform..

The language of mental health problems in social media

Maria Liakata, Sumithra Velupillai, Richard J. B. Dobson, 2016, CLPsych@HLT-NAACL.

An ontology approach to comparative phenomics in plants

Eva Huala, Robert Hoehndorf, Anika Oellrich, 2015, Plant Methods.

Automated PDF highlighting to support faster curation of literature for Parkinson’s and Alzheimer’s disease

Richard J. B. Dobson, Tim J. P. Hubbard, Anika Oellrich, 2017, Database J. Biol. Databases Curation.

Exploring the Generation and Integration of Publishable Scientific Facts Using the Concept of Nano-publications

Dietrich Rebholz-Schuhmann, Maria Liakata, Amanda Clare, 2011, SePublica.

Using association rule mining to determine promising secondary phenotyping hypotheses

Irene Papatheodorou, Damian Smedley, Julius O. B. Jacobsen, 2014, Bioinform..

Using silver and semi-gold standard corpora to compare open named entity recognisers

Nigel Collier, Tudor Groza, Anika Oellrich, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

Flash Talk: An Ontology Approach to Comparative Phenomics in Plants

Scott R. Kalberer, Rex T. Nelson, Ethalinda K. S. Cannon, 2015 .

Interoperability between phenotype and anatomy ontologies

A. Oellrich, R. Hoehndorf, Dietrich Rebholz-Schuhmann, 2010, Bioinform..

Challenges and opportunities for system biology standards and tools in medical research

Olaf Wolkenhauer, Dagmar Waltemath, Richard J. B. Dobson, 2016, ODLS.

Concept selection for phenotypes and diseases using learn to rank

Nigel Collier, Tudor Groza, Anika Oellrich, 2015, Journal of Biomedical Semantics.

Toward knowledge support for analysis and interpretation of complex traits

Nigel Collier, Tudor Groza, Anika Oellrich, 2013, Genome Biology.

Linking gene expression to phenotypes via pathway information

Irene Papatheodorou, Damian Smedley, Anika Oellrich, 2015, Journal of Biomedical Semantics.