M. Swat

发表

3D Multi-Cell Simulation of Tumor Growth and Angiogenesis

J. Glazier, A. Shirinifard, J. S. Gens, 2009, PloS one.

Multi-scale modeling of tissues using CompuCell3D.

Abbas Shirinifard, James A Glazier, Julio M Belmonte, 2012, Methods in cell biology.

Front Instabilities and Invasiveness of Simulated Avascular Tumors

A. Anderson, J. Glazier, J. S. Gens, 2009, Bulletin of mathematical biology.

Integrating Intracellular Dynamics Using CompuCell3D and Bionetsolver: Applications to Multiscale Modelling of Cancer Cell Growth and Invasion

Mark A. J. Chaplain, M. Chaplain, M. Swat, 2012, PloS one.

Spatial Modeling of Drug Delivery Routes for Treatment of Disseminated Ovarian Cancer.

Kimberly R. Kanigel Winner, Maciej Swat, Bridget S Wilson, 2016, Cancer research.

Emergent Stratification in Solid Tumors Selects for Reduced Cohesion of Tumor Cells: A Multi-Cell, Virtual-Tissue Model of Tumor Evolution Using CompuCell3D

Abbas Shirinifard, James A. Glazier, Gilberto L. Thomas, 2015, PloS one.

Bystander effects and their implications for clinical radiation therapy: Insights from multiscale in silico experiments.

Mark A. J. Chaplain, Gibin G. Powathil, M. Chaplain, 2014, Journal of theoretical biology.

Investigating the development of chemotherapeutic drug resistance in cancer: A multiscale computational study

Mark A. J. Chaplain, Gibin G. Powathil, M. Chaplain, 2014, 1407.0865.

From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development

Jesús A. Izaguirre, James A. Glazier, Stuart A. Newman, 2007, Computing in Science & Engineering.

A threaded Java concurrent implementation of the Monte-Carlo Metropolis Ising model.

Manuel Alfonseca, Maciej Swat, Carlos Castañeda-Marroquín, 2009, International Work-Conference on the Interplay between Natural and Artificial Computation.

The Glazier-Graner-Hogeweg Model: Extensions, Future Directions, and Opportunities for Further Study

Roeland M. H. Merks, James A. Glazier, Maciej Swat, 2007 .

Computational model of wound healing: EGF secreted by fibroblasts promotes delayed re-epithelialization of epithelial keratinocytes.

M. Swat, M. Zaman, F. Spill, 2018, Integrative biology : quantitative biosciences from nano to macro.

Coordinated action of N-CAM, N-cadherin, EphA4, and ephrinB2 translates genetic prepatterns into structure during somitogenesis in chick.

Maciej Swat, James A Glazier, Benjamin Zaitlen, 2008, Current topics in developmental biology.

7 Coordinated Action of N-CAM , N-cadherin , EphA 4 , and ephrinB 2 Translates Genetic

S. Schnell, J. Glazier, B. Zaitlen, 2007 .

Differential Adhesion and Cell Sorting

J. Glazier, A. Shirinifard, M. Swat, 2013 .

Computer Simulations of Cell Sorting Due to Differential Adhesion

Abbas Shirinifard, James A. Glazier, Maciej Swat, 2011, PloS one.

Systems oncology: towards patient-specific treatment regimes informed by multiscale mathematical modelling.

Maciej Swat, Gibin G Powathil, Mark A. J. Chaplain, 2015, Seminars in cancer biology.

Virtual-tissue computer simulations define the roles of cell adhesion and proliferation in the onset of kidney cystic disease

James A. Glazier, Julio M. Belmonte, Sherry G. Clendenon, 2016, Molecular biology of the cell.

Front Instabilities and Invasiveness of Simulated 3D Avascular Tumors

J. Glazier, A. Shirinifard, J. S. Gens, 2009, PloS one.

Development of computational model for cell dose and DNA damage quantification of multicellular system

M. Swat, F. Reynoso, T. Zhao, 2019, International journal of radiation biology.

A Liver-Centric Multiscale Modeling Framework for Xenobiotics

Xiao Fu, James A Glazier, Sherry G Clendenon, 2016, PloS one.

Adhesion Failures Determine the Pattern of Choroidal Neovascularization in the Eye: A Computer Simulation Study

Yi Jiang, Abbas Shirinifard, James A. Glazier, 2012, PLoS Comput. Biol..

Multicell simulations of development and disease using the CompuCell3D simulation environment.

James A Glazier, S. Hester, R. Heiland, 2009, Methods in molecular biology.

The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents

Abbas Shirinifard, James A. Glazier, Maciej Swat, 2014, Bioinform..

Adhesion between cells, diffusion of growth factors, and elasticity of the AER produce the paddle shape of the chick limb.

Maciej Swat, James A Glazier, J. Glazier, 2006, Physica A.

Simulation of single-species bacterial-biofilm growth using the Glazier-Graner-Hogeweg model and the CompuCell3D modeling environment.

J. Glazier, A. Shirinifard, N. Popławski, 2008, Mathematical biosciences and engineering : MBE.

From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development

Jesús A. Izaguirre, Roeland M. H. Merks, James A. Glazier, 2007, Computing in Science & Engineering.

Filopodial-Tension Model of Convergent-Extension of Tissues

James A. Glazier, Maciej Swat, Julio M. Belmonte, 2016, PLoS Comput. Biol..

Development of a coupled simulation toolkit for computational radiation biology based on Geant4 and CompuCell3D

Mark A. J. Chaplain, Gibin G. Powathil, M. Chaplain, 2020, bioRxiv.

Modeling tissues using CompuCell3D

M. Swat, 2014 .

A framework for evaluating edited cell libraries created by massively parallel genome engineering

Andrea L. Halweg-Edwards, D. Church, S. Cawley, 2021, bioRxiv.

libRoadRunner: A High Performance SBML Simulation and Analysis Library

Endre T. Somogyi, Jean-Marie C. Bouteiller, Kyle Medley, 2015, Bioinform..

II. 4 The Glazier–Graner–Hogeweg Model: Extensions, Future Directions, and Opportunities for Further Study

Roeland M. H. Merks, N. Popławski, M. Swat, 2007 .