Edward M. Marcotte

发表

Modes of Interaction between Individuals Dominate the Topologies of Real World Networks

Insuk Lee, Eiru Kim, Edward M. Marcotte, 2014, bioRxiv.

Integrating Co-occurrence Statistics with Information Extraction for Robust Retrieval of Protein Interactions from Medline

Razvan C. Bunescu, Raymond J. Mooney, Edward M. Marcotte, 2006, BioNLP@NAACL-HLT.

Modes of interaction between individuals dominate the topologies of real world networks

In suk Lee, Eiru Kim, Edward M. Marcotte, 2014 .

Comparative experiments on learning information extractors for proteins and their interactions

Rohit J. Kate, Razvan C. Bunescu, Raymond J. Mooney, 2005, Artif. Intell. Medicine.

A Theoretical Justification for Single Molecule Peptide Sequencing

Edward M. Marcotte, Jagannath Swaminathan, Alexander A. Boulgakov, 2014, bioRxiv.

Simplified geometric representations of protein structures identify complementary interaction interfaces

Edward M. Marcotte, David W. Taylor, Caitlyn L McCafferty, 2019, bioRxiv.

MORPHIN: a web tool for human disease research by projecting model organism biology onto a human integrated gene network

Sunmo Yang, Insuk Lee, Eiru Kim, 2014, Nucleic Acids Res..

Protein function prediction using the Protein Link EXplorer (PLEX)

Edward M. Marcotte, Shailesh V. Date, E. Marcotte, 2005, Bioinform..

Extracting gene and protein names from biomedical abstracts

Raymond J. Mooney, Edward M. Marcotte, Arun K. Ramani, 2002 .

Towards Consensus Gene Ages

Edward M. Marcotte, Benjamin J. Liebeskind, Claire D. McWhite, 2016 .

Exploiting Big Biology: Integrating Large-scale Biological Data for Function Inference

Edward M. Marcotte, Shailesh V. Date, E. Marcotte, 2001, Briefings Bioinform..

Disease Modeling via Large-Scale Network Analysis

Inderjit S. Dhillon, Edward M. Marcotte, 2015 .

Integration and validation of mass spectrometry proteomics data sets

Edward M. Marcotte, John T. Prince, E. Marcotte, 2008 .

Identifying direct contacts between protein complex subunits from their conditional dependence in proteomics datasets

Christian L. Müller, Richard Bonneau, Edward M. Marcotte, 2017, PLoS Comput. Biol..

Mining gene functional networks to improve mass-spectrometry-based protein identification

Daniel P. Miranker, Christine Vogel, Edward M. Marcotte, 2009, Bioinform..

MouseNet v2: a database of gene networks for studying the laboratory mouse and eight other model vertebrates

Hyojin Kim, Sunmo Yang, Insuk Lee, 2015, Nucleic Acids Res..

mspire: mass spectrometry proteomics in Ruby

Edward M. Marcotte, John T. Prince, E. Marcotte, 2008, Bioinform..

A highly parallel strategy for storage of digital information in living cells

Andrew D. Ellington, Edward M. Marcotte, Azat Akhmetov, 2016 .

Diametrical clustering for identifying anti-correlated gene clusters

Inderjit S. Dhillon, Edward M. Marcotte, Usman Roshan, 2003, Bioinform..

DIP: The Database of Interacting Proteins: 2001 update

Ioannis Xenarios, David S. Eisenberg, Edward M. Marcotte, 2001, Nucleic Acids Res..

Ancestral reconstruction of protein interaction networks

Edward M. Marcotte, Benjamin J. Liebeskind, Richard W. Aldrich, 2018, bioRxiv.

HumanNet v2: human gene networks for disease research

Sunmo Yang, Insuk Lee, Chan Yeong Kim, 2018, Nucleic Acids Res..

Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence

Wan Kyu Kim, Edward M. Marcotte, W. Kim, 2008, PLoS Comput. Biol..

GWAB: a web server for the network-based boosting of human genome-wide association data

Jung Eun Shim, Sunmo Yang, Insuk Lee, 2017, Nucleic Acids Res..

Computational discovery of pathway-level genetic vulnerabilities in non-small-cell lung cancer

Michael A. White, Michael Peyton, John D. Minna, 2016, Bioinform..

Prediction of gene–phenotype associations in humans, mice, and plants using phenologs

Edward M. Marcotte, Kriston L. McGary, Jon M. Laurent, 2013, BMC Bioinformatics.

A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality

Insuk Lee, Edward M. Marcotte, G. Traver Hart, 2007, BMC Bioinformatics.

Mining literature for protein-protein interactions

Ioannis Xenarios, David S. Eisenberg, Edward M. Marcotte, 2001, Bioinform..

Using Biomedical Literature Mining to Consolidate the Set of Known Human Protein-Protein Interactions

Razvan C. Bunescu, Raymond J. Mooney, Edward M. Marcotte, 2005, LBLODMBS@IDMB.

Revisiting the negative example sampling problem for predicting protein-protein interactions

Yungki Park, Edward M. Marcotte, E. Marcotte, 2011, Bioinform..

A fast coarse filtering method for peptide identification by mass spectrometry

Daniel P. Miranker, Rui Mao, Weijia Xu, 2006, Bioinform..

Predicting Gene-Disease Associations Using Multiple Species Data

Nagarajan Natarajan, Inderjit S. Dhillon, Ambuj Tewari, 2011 .

The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results

Rong Wang, Shih-Ting Huang, Scott N. Peterson, 2008, BMC Bioinformatics.

Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation

Claus O. Wilke, Edward M. Marcotte, Joshua K. Michener, 2015, PLoS Comput. Biol..

Predicting Protein Function and Nworks on a Genomewide Scale

Edward M. Marcotte, E. Marcotte, 2002, Gene Regulations and Metabolism.

Learning to Extract Proteins and their Interactions from Medline Abstracts

Rohit J. Kate, Raymond J. Mooney, Yuk Wah Wong, 2003 .

Integrating shotgun proteomics and mRNA expression data to improve protein identification

Rong Wang, Daniel P. Miranker, Zhihua Li, 2009, Bioinform..

From Space to Sequence and Back Again: Iterative DNA Proximity Ligation and its Applications to DNA-Based Imaging

Andrew D. Ellington, Edward M. Marcotte, Alexander A. Boulgakov, 2018 .

DIP: the Database of Interacting Proteins

Ioannis Xenarios, David S. Eisenberg, Edward M. Marcotte, 2000, Nucleic Acids Res..

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Olga Kagan, John Parkinson, Edward M. Marcotte, 2015, Data in brief.

Protein Expression Regulation under Oxidative Stress*

Christine Vogel, Edward M. Marcotte, E. Marcotte, 2011, Molecular & Cellular Proteomics.

24 Bioinformatic Prediction of Yeast Gene Function

In suk Lee, Edward M. Marcotte, E. Marcotte, 2007 .

Learning Information Extractors for Proteins and their Interactions

Rohit J. Kate, Raymond J. Mooney, Yuk Wah Wong, .

Characterising and Predicting Haploinsufficiency in the Human Genome

Insuk Lee, Edward M. Marcotte, Matthew E. Hurles, 2010, PLoS genetics.

Mechanisms of Cell Cycle Control Revealed by a Systematic and Quantitative Overexpression Screen in S. cerevisiae

Edward M. Marcotte, Zhihua Li, Vishwanath R. Iyer, 2008, PLoS genetics.

Widespread reorganization of metabolic enzymes into reversible assemblies upon nutrient starvation

Andrew D. Ellington, Edward M. Marcotte, Jeremy D O'Connell, 2009, Proceedings of the National Academy of Sciences.

Chitinases, chitosanases, and lysozymes can be divided into procaryotic and eucaryotic families sharing a conserved core

Edward M. Marcotte, E. Marcotte, A. Monzingo, 1996, Nature Structural Biology.

Proteomic Identification of Monoclonal Antibodies from Serum

Edward M. Marcotte, George Georgiou, Daniel R. Boutz, 2014, Analytical chemistry.

Identification and characterization of the constituent human serum antibodies elicited by vaccination

Andrew D. Ellington, Edward M. Marcotte, George Georgiou, 2014, Proceedings of the National Academy of Sciences.

Ribosome stalk assembly requires the dual-specificity phosphatase Yvh1 for the exchange of Mrt4 with P0

Edward M. Marcotte, Zhihua Li, Arlen W. Johnson, 2009, The Journal of cell biology.

A fast coarse filtering method for protein identification by mass spectrometry

Daniel P. Miranker, Rui Mao, Weijia Xu, .

Classification of Single Particles from Human Cell Extract Reveals Distinct Structures

Edward M. Marcotte, David W. Taylor, E. Marcotte, 2018, bioRxiv.

Human Cell Chips: Adapting DNA Microarray Spotting Technology to Cell-Based Imaging Assays

Edward M. Marcotte, Traver Hart, E. Marcotte, 2009, PloS one.

Molecular deconvolution of the monoclonal antibodies that comprise the polyclonal serum response

Andrew D. Ellington, Edward M. Marcotte, George Georgiou, 2013, Proceedings of the National Academy of Sciences.

Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics

Insuk Lee, Edward M. Marcotte, Zhihua Li, 2009, PLoS biology.

The path not taken

Edward M. Marcotte, E. Marcotte, 2001, Nature Biotechnology.

Parallel Evolution in Pseudomonas aeruginosa over 39,000 Generations In Vivo

Edward M. Marcotte, Taejoon Kwon, E. Marcotte, 2010, mBio.

Systematic humanization of yeast genes reveals conserved functions and genetic modularity

Austin G. Meyer, Claus O. Wilke, Edward M. Marcotte, 2015, Science.

Systematic comparison of variant calling pipelines using gold standard personal exome variants

Insuk Lee, Eiru Kim, Edward M. Marcotte, 2015, Scientific Reports.

Bud23 Methylates G1575 of 18S rRNA and Is Required for Efficient Nuclear Export of Pre-40S Subunits

Janusz M. Bujnicki, Edward M. Marcotte, Zhihua Li, 2008, Molecular and Cellular Biology.

Systematic Definition of Protein Constituents along the Major Polarization Axis Reveals an Adaptive Reuse of the Polarization Machinery in Pheromone-Treated Budding Yeast

Andrew D. Ellington, Edward M. Marcotte, Kriston L. McGary, 2008, Journal of proteome research.