T. Otto
发表
Jon D. McAuliffe,
A. Krogh,
E. Dermitzakis,
2010,
PLoS genetics.
M. Berriman,
C. Newbold,
T. Otto,
2013,
Genome Biology.
Mihir Kekre,
Dominic P. Kwiatkowski,
Magnus Manske,
2016,
Malaria Journal.
Thomas D. Otto,
T. Otto,
2011,
Nature Reviews Microbiology.
T. Otto,
C. Morang’a,
L. Amenga-Etego,
2020,
BMC Medicine.
T. Otto,
K. Matthews,
R. McCulloch,
2020,
bioRxiv.
Samuel A. Assefa,
Thomas M. Keane,
B. Barrell,
2010,
Molecular microbiology.
M. Berriman,
C. Newbold,
T. Otto,
2018,
Nature Microbiology.
D. Kwiatkowski,
H. Swerdlow,
D. Turner,
2012,
BMC Genomics.
M. Berriman,
C. Newbold,
T. Otto,
2014,
Genome Biology.
N. Grishin,
J. Pei,
W. Snell,
2013,
Genes & development.
T. Gilberger,
T. Otto,
Jan Strauss,
2020,
bioRxiv.
L. Coin,
D. Conway,
T. Otto,
2017,
Science Translational Medicine.
D. Conway,
M. Berriman,
C. Newbold,
2018,
Wellcome open research.
Samuel A. Assefa,
D. Kwiatkowski,
M. Berriman,
2019,
Wellcome open research.
Peter D. Crompton,
Joana S. Martins,
M. Llinás,
2020,
Nature Medicine.
Jacqueline A. Keane,
J. Parkhill,
N. D. Silva,
2015,
Genome Biology.
J. Parkhill,
S. Harris,
T. Otto,
2015,
bioRxiv.
M. Berriman,
T. Otto,
Isheng. J. Tsai,
2010,
Genome Biology.
Samuel A. Assefa,
M. Berriman,
C. Newbold,
2012,
Nature Protocols.
J. Rayner,
D. Conway,
M. Quail,
2014,
Nature Communications.
D. Kwiatkowski,
R. Price,
J. McCarthy,
2017,
Nature.
T. Otto,
M. Frank,
E. Bruske,
2018,
Malaria Journal.
Alejandro Sanchez-Flores,
Samuel A. Assefa,
Martin Hunt,
2011,
PLoS pathogens.
D. Kwiatkowski,
R. Price,
J. McCarthy,
2016,
bioRxiv.
Thomas D. Otto,
Matthew Berriman,
M. Berriman,
2011,
Nucleic acids research.
X. Su,
A. Feller,
M. Berriman,
2013,
Molecular microbiology.
Konrad U. Förstner,
R. Sebra,
A. Saliba,
2018,
Nature.
Complete avian malaria parasite genomes reveal host-specific parasite evolution in birds and mammals
M. Berriman,
C. Newbold,
J. Cotton,
2016,
bioRxiv.
Deirdre A. Cunningham,
M. Berriman,
A. Pain,
2012,
BMC Genomics.
L. Coin,
D. Conway,
T. Otto,
2018,
Microbiology and Molecular Biology Reviews.
R. Baumgartner,
H. Vial,
T. Otto,
2017,
Nature Communications.
Tareq B. Malas,
B. Barrell,
J. Parkinson,
2014,
Genome research.
H. Tanke,
E. Pasini,
T. Otto,
2016,
PLoS pathogens.
K. Brooks,
J. Cotton,
T. Otto,
2019,
PLoS genetics.
K. Brooks,
J. Cotton,
T. Otto,
2019,
bioRxiv.
David W. Gray,
E. Winzeler,
S. Meister,
2015,
Nature.
R. Price,
M. Berriman,
C. Newbold,
2016,
Wellcome open research.
M. Mann,
M. Berriman,
E. Pasini,
2012,
Molecular & Cellular Proteomics.
J. Rayner,
M. Zhang,
T. Otto,
2013,
Eukaryotic Cell.
J. Rayner,
T. Otto,
N. Singh,
2013
.
Mark C. Field,
M. Aslett,
M. Berriman,
2016,
Current Biology.
Michael D. Urbaniak,
David W. Gray,
G. Drewes,
2018,
Nature.
M. Berriman,
C. Newbold,
T. Otto,
2019,
Wellcome open research.
M. Berriman,
C. Newbold,
T. Otto,
2019,
Wellcome open research.
A. Pain,
T. Otto,
R. Ummels,
2014
.
M. Berriman,
C. Newbold,
T. Otto,
2018,
npj Vaccines.
C. Newbold,
T. Otto,
M. Sanders,
2018
.
M. Berriman,
C. Newbold,
T. Otto,
2016,
bioRxiv.
J. Rayner,
M. Berriman,
M. Llinás,
2019,
BMC Genomics.
J. Rayner,
D. Conway,
T. Otto,
2018,
BMC Genomics.
Tareq B. Malas,
M. Quail,
J. Gamble,
2014,
Nucleic acids research.
T. Otto,
A. MacLeod,
N. Mabbott,
2022
.
T. Otto,
C. Morang’a,
S. Bah,
2020
.
A. Pain,
T. Otto,
R. Ummels,
2018,
bioRxiv.
T. Otto,
K. Kirschner,
I. Udalova,
2020
.
T. Otto,
J. Gray,
J. Brewer,
2020,
bioRxiv.
Plasmodium vivax-like genome sequences shed new insights into Plasmodium vivax biology and evolution
T. Otto,
F. Prugnolle,
G. Rutledge,
2017,
bioRxiv.
J. McCarthy,
M. Berriman,
T. Otto,
2019,
The Journal of infectious diseases.
R. Price,
M. Berriman,
C. Newbold,
2017,
Emerging infectious diseases.
Michel Theron,
J. Rayner,
D. Kwiatkowski,
2018,
PLoS pathogens.
T. Otto,
L. de Lecea,
A. MacLeod,
2022,
Nature Communications.
S. Clare,
G. Dougan,
J. Parkhill,
2016,
Nature microbiology.
T. Otto,
D. Beraldi,
C. Moxon,
2022,
Science advances.
T. Otto,
Jan Strauss,
B. Kreuels,
2020
.
R. Baumgartner,
H. Vial,
T. Otto,
2017,
Nature communications.
Tareq B. Malas,
T. Clark,
A. Pain,
2015,
Scientific Reports.
J. Rayner,
T. Otto,
M. Pinheiro,
2015,
PloS one.
J. Rayner,
T. Otto,
Chengqi Wang,
2023,
Scientific Reports.
Thomas D. Otto,
Sérgio Lifschitz,
Marcos Catanho,
2010,
Bioinform..
Wim Degrave,
Marcos Catanho,
Antonio Basílio de Miranda,
2007
.
Sandhya Kortagere,
Thomas D. Otto,
Vicky M. Avery,
2014,
Nature Communications.
T. Otto,
J. Brewer,
P. Garside,
2020,
Frontiers in Immunology.
A. Pain,
C. Dolecek,
J. Barnwell,
2010,
The Journal of infectious diseases.
H. Swerdlow,
M. Quail,
P. Coupland,
2012,
BMC Genomics.
Sylvain Gandon,
Ulrike Böhme,
Sascha Steinbiss,
2018,
Genome research.
J. Rayner,
J. K. Moch,
J. Haynes,
2017,
Scientific Reports.
Diego Miranda-Saavedra,
Neil D Rawlings,
Chris Bowler,
2015,
eLife.
Ellen Bushell,
Oliver Billker,
Thomas D. Otto,
2014,
Nature.
Michael A Quail,
Thomas D Otto,
Simon R Harris,
2011,
Nature Methods.
Matthew Berriman,
Thomas D. Otto,
Chris Newbold,
2010,
Bioinform..
Julian Parkhill,
Simon R. Harris,
Martin Hunt,
2016,
bioRxiv.
J. Parkhill,
N. D. Silva,
S. Harris,
2015,
bioRxiv.
T. Otto,
C. R. Alves,
C. Britto,
2010,
Experimental parasitology.
Mihir Kekre,
Julian C. Rayner,
Thomas D. Otto,
2014,
PLoS genetics.
M. Blaxter,
A. Pain,
T. Otto,
2010,
BMC Genomics.
Christiane Hertz-Fowler,
Mark C. Field,
Mark C Field,
2012,
Proceedings of the National Academy of Sciences.
Astrid Gall,
Thomas D. Otto,
Paul Kellam,
2015,
Bioinform..
T D Otto,
E A Vasconcellos,
L H F Gomes,
2008,
Genetics and molecular research : GMR.
Kami Kim,
T. Otto,
Chengqi Wang,
2023,
bioRxiv.
T. Otto,
K. Matthews,
R. McCulloch,
2021,
Nature Communications.
J. Rayner,
D. Conway,
T. Otto,
2018,
bioRxiv.
T. Otto,
F. Marec,
K. Sahara,
1999,
Chromosoma.
D. Kwiatkowski,
K. Rockett,
M. Manske,
2016,
bioRxiv.
Adhemar Zerlotini,
Anna V. Protasio,
Martin Hunt,
2012,
PLoS neglected tropical diseases.
T. Otto,
K. Matthews,
R. McCulloch,
2021,
Parasitology.
T. Otto,
K. Kirschner,
S. Sansom,
2020,
Nature Medicine.
J. Rayner,
D. Kwiatkowski,
T. Otto,
2016,
Nucleic acids research.
Thomas M. Keane,
Matthew Berriman,
Samuel A. Assefa,
2009,
Bioinform..
Thomas D. Otto,
Antonio Basílio de Miranda,
Wim M. Degrave,
2008
.
M. Berriman,
E. Pasini,
T. Otto,
2017,
Wellcome open research.
Tareq B. Malas,
B. Barrell,
J. Parkinson,
2017
.
D. Gray,
T. Otto,
C. Goodyear,
2023,
bioRxiv.
T. Otto,
L. de Lecea,
A. MacLeod,
2022,
bioRxiv.
Ulrike Böhme,
Martin Hunt,
Oliver Billker,
2014,
BMC Biology.
Deirdre A. Cunningham,
S. Howell,
A. Pain,
2011,
PLoS pathogens.
J. Rayner,
T. Otto,
N. Singh,
2013
.
R. Maizels,
T. Otto,
T. McNeilly,
2021,
Frontiers in Immunology.
A. Hayday,
T. Otto,
C. Goodyear,
2020,
Proceedings of the National Academy of Sciences.
J. Rayner,
T. Otto,
Chengqi Wang,
2018,
Science.
J. McCarthy,
A. Nicosia,
T. Otto,
2017,
JCI insight.
Inanç Birol,
Dominique Lavenier,
Hamidreza Chitsaz,
2013,
GigaScience.
A. Gasbarrini,
M. Antonelli,
T. Otto,
2021,
JCI insight.
D. Kwiatkowski,
H. Swerdlow,
M. Quail,
2012,
Journal of Clinical Microbiology.
T. Otto,
K. Matthews,
Catarina A. Marques,
2023,
bioRxiv.
Thomas D. Otto,
Antonio Basílio de Miranda,
Wim M. Degrave,
2008,
BMC Bioinformatics.
T D Otto,
M Alves-Ferreira,
T. Otto,
2008,
Genetics and molecular research : GMR.
D. Kwiatkowski,
D. Conway,
M. Diakité,
2018,
Scientific Reports.
Quantitative insertion-site sequencing (QIseq) for high throughput phenotyping of transposon mutants
J. Rayner,
M. Quail,
T. Otto,
2016,
Genome research.
S. Clare,
G. Dougan,
J. Parkhill,
2016,
Nature Microbiology.
J. Rayner,
T. Otto,
A. Blagborough,
2021,
JCI insight.
J. Rayner,
T. Otto,
A. Blagborough,
2021,
medRxiv.
Matthew Berriman,
Thomas D. Otto,
Tim J. Carver,
2012,
Briefings Bioinform..
Pawel Herzyk,
Christiane Hertz-Fowler,
Hideo Imamura,
2011,
Genome research.
T. Gilberger,
T. Otto,
Jan Strauss,
2020
.
J. Rayner,
T. Otto,
J. Adams,
2021,
Trends in parasitology.
P. Wilairat,
T. Otto,
K. Chotivanich,
2016,
Malaria Journal.
J. Rayner,
T. Otto,
Chengqi Wang,
2020,
Nature Communications.
T. Otto,
H. Willison,
J. Turnbull,
2018,
Glia.
M. Berriman,
C. Newbold,
T. Otto,
2014,
Genome Biology.
A. Pain,
T. Otto,
P. Keeling,
2015,
Molecular biology and evolution.
Zbynek Bozdech,
T. Otto,
M. Duraisingh,
2023,
bioRxiv.
P. Marrack,
T. Otto,
J. Kappler,
2020,
bioRxiv.
T. Otto,
D. Somma,
I. McInnes,
2020,
bioRxiv.
D. Gray,
T. Otto,
C. Goodyear,
2023,
bioRxiv.
Matthew Berriman,
Thomas D. Otto,
Tim J. Carver,
2010,
Bioinform..
J. Rayner,
M. Quail,
B. Rosen,
2011,
Nature Methods.
T. Otto,
R. W. Jensen,
T. Lavstsen,
2022,
BMC Bioinform..
R. Sebra,
A. Saliba,
J. Vogel,
2018,
Nature.
Michael D. Urbaniak,
G. Drewes,
Markus Boesche,
2018,
Nature.
M. Berriman,
D. V. van Schalkwyk,
P. Chiodini,
2017,
Antimicrobial Agents and Chemotherapy.
D. Kwiatkowski,
H. Swerdlow,
M. Quail,
2012,
The open genomics journal.
Peter D. Crompton,
Joana S. Martins,
M. Llinás,
2020,
Nature Medicine.
T. Otto,
D. Beraldi,
C. Moxon,
2021,
bioRxiv.
T. Otto,
Gavin G. Rutledge,
2016,
Nature Reviews Microbiology.
Diego F. Echeverry,
T. Otto,
A. Abdi,
2021,
bioRxiv.
T. Otto,
T. McNeilly,
R. Laing,
2023,
International journal for parasitology.
Genome Sequence of Mycobacterium bovis BCG Moreau, the Brazilian Vaccine Strain against Tuberculosis
W. Degrave,
T. Otto,
L. Mendonça-Lima,
2011,
Journal of bacteriology.
R. Rance,
K. Marsh,
T. Otto,
2019,
Front. Immunol..
L. Dardenne,
T. Otto,
P. Capriles,
2010,
BMC Genomics.
Tareq B. Malas,
A. Pain,
T. Otto,
2019,
PloS one.
Douwe Molenaar,
Gemma C. Langridge,
Thomas D. Otto,
2015,
Infection and Immunity.
A. Shalek,
T. Otto,
C. Morang’a,
2023,
medRxiv.
T. Otto,
Chengqi Wang,
L. Cui,
2023,
mSphere.
M. Llinás,
Chen-feng Qi,
T. Otto,
2020,
Science Advances.
Tareq B. Malas,
Thomas D. Otto,
Raeece Naeem,
2015,
PloS one.
A. Craig,
C. Newbold,
T. Otto,
2018,
Scientific Reports.
T. Otto,
M. Frank,
E. Bruske,
2018,
Malaria Journal.
T. Otto,
P. Kremsner,
M. Frank,
2020,
Malaria Journal.
Brian P. Brunk,
Matthew Berriman,
Thomas D. Otto,
2016,
Nucleic Acids Res..
J. Rayner,
T. Otto,
Chengqi Wang,
2023,
Microbiology spectrum.
R. Baumgartner,
H. Vial,
T. Otto,
2017,
Nature Communications.
E. Winzeler,
S. Meister,
J. Rayner,
2016,
Nature.
J. Rayner,
T. Otto,
Chengqi Wang,
2023,
Microbiology spectrum.
L. Coin,
D. Conway,
A. Ghani,
2019,
Nature Microbiology.
T. Gilberger,
T. Otto,
J. Baum,
2023,
bioRxiv.
Joana C. Silva,
S. Hoffman,
T. Gilberger,
2022,
medRxiv.
P. Wilairat,
T. Otto,
N. White,
2016,
Malaria Journal.
Thomas D. Otto,
B. Foth,
T. Otto,
2014,
Nature Reviews Microbiology.
Julian Parkhill,
Simon R. Harris,
Martin Hunt,
2016,
bioRxiv.
Thomas D Otto,
T. Otto,
2015,
Methods in molecular biology.
A. Pain,
N. Thomson,
T. Otto,
2014
.
Thomas D. Otto,
T. Otto,
2010,
Nature Reviews Microbiology.
M. Berriman,
C. Newbold,
T. Otto,
2013,
Genome biology.
T. Otto,
K. Crouch,
William A. Haese-Hill,
2022,
bioRxiv.
T. Otto,
K. Matthews,
R. McCulloch,
2022,
bioRxiv.
Chen-feng Qi,
T. Otto,
O. Billker,
2020,
Scientific Reports.
T. Otto,
F. Prugnolle,
A. Gilabert,
2018
.
Deirdre A. Cunningham,
H. Stunnenberg,
M. Berriman,
2014,
BMC Biology.
D. Gray,
T. Otto,
C. Goodyear,
2023,
Frontiers in immunology.
M. Berriman,
C. Newbold,
T. Otto,
2016
.
Samuel A. Assefa,
D. Kwiatkowski,
M. Berriman,
2019,
Wellcome open research.
T. Otto,
K. Kirschner,
S. Sansom,
2020,
Nature Medicine.
L. Coin,
D. Conway,
A. Ghani,
2019
.
Michael D. Urbaniak,
David W. Gray,
G. Drewes,
2023,
Nature.
J. Rayner,
T. Otto,
Chengqi Wang,
2019
.
T. Otto,
H. Willison,
J. Turnbull,
2018,
Glia.
H. Tanke,
E. Pasini,
T. Otto,
2016,
PLoS pathogens.
Jacqueline A. Keane,
J. Parkhill,
N. D. Silva,
2015,
Genome Biology.
Michael D. Urbaniak,
David W. Gray,
G. Drewes,
2018,
Nature.
H. Swerdlow,
M. Quail,
S. Harris,
2011,
Nature Methods.
T. Otto,
D. Somma,
I. McInnes,
2020,
bioRxiv.
T. Gilberger,
T. Otto,
J. Baum,
2023,
bioRxiv.
D. Kwiatkowski,
H. Swerdlow,
M. Quail,
2012,
Journal of Clinical Microbiology.
D. Kwiatkowski,
H. Swerdlow,
D. Turner,
2012,
BMC Genomics.
Fabio Porto,
Sérgio Lifschitz,
Thomas D. Otto,
2007
.
Kami Kim,
T. Otto,
Chengqi Wang,
2023,
bioRxiv.