D. Weston

发表

Microbial-type terpene synthase genes occur widely in nonseed land plants, but not in seed plants

J. Gershenzon, G. Wong, Guanglin Li, 2016, Proceedings of the National Academy of Sciences.

Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores

T. Joshi, J. Schultz, D. Weston, 2014, Front. Plant Sci..

Gene expression profiling: opening the black box of plant ecosystem responses to global change

Erika A. Sudderth, D. Weston, S. Placella, 2009 .

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world.

Karen Schlauch, Klaus Winter, Hengfu Yin, 2015, The New phytologist.

Sphagnum peat moss thermotolerance is modulated by the microbiome

Dana L. Carper, Travis J. Lawrence, J. Grimwood, 2020, bioRxiv.

DISCo-microbe: design of an identifiable synthetic community of microbes

Dana L. Carper, Travis J. Lawrence, D. Weston, 2019, PeerJ.

Engineering crassulacean acid metabolism to improve water-use efficiency.

T. Tschaplinski, D. Weston, G. Tuskan, 2014, Trends in plant science.

KBase: The United States Department of Energy Systems Biology Knowledgebase

Rick L. Stevens, James J. Davis, Kevin P. Keegan, 2018, Nature Biotechnology.

PhyloSift: phylogenetic analysis of genomes and metagenomes

Henry C. M. Leung, Brian C. Thomas, Ocn, 2014, PeerJ.

Photosynthetic parameters and nutrient content of trees at the Panama crane sites

Ivan C. Haworth, Benjamin L Turner, L. Gu, 2016 .

Sphagnum physiology in the context of changing climate: emergent influences of genomics, modelling and host-microbiome interactions on understanding ecosystem function.

J. Schmutz, L. Gu, D. Weston, 2015, Plant, cell & environment.

Biophysical drivers of seasonal variability in Sphagnum gross primary production in a northern temperate bog

Stephen D. Sebestyen, Anthony P. Walker, Lianhong Gu, 2017 .

Modeling the hydrology and physiology of Sphagnum moss in a 1 northern temperate bog 2 3

J. Mao, Xiaoying Shi, R. Norby, 2020 .

Analyses of transcriptome sequences reveal multiple ancient large-scale duplication events in the ancestor of Sphagnopsida (Bryophyta).

Matthew G. Johnson, D. Weston, C. Rothfels, 2016, The New phytologist.

Root and Rhizosphere Bacterial Phosphatase Activity Varies with Tree Species and Soil Phosphorus Availability in Puerto Rico Tropical Forest

R. Norby, D. Weston, D. Pelletier, 2017, Front. Plant Sci..

Temporal and Spatial Variation in Peatland Carbon Cycling and Implications for Interpreting Responses of an Ecosystem-Scale Warming Experiment

Xiaoying Shi, R. Norby, D. Ricciuto, 2017 .

Tradeoffs between phenotypic plasticity and local adaptation influence the ecophysiology of the moss, Sphagnum magellanicum

M. Turetsky, D. Weston, J. A. Shaw, 2020, Oecologia.

Bringing function to structure: Root–soil interactions shaping phosphatase activity throughout a soil profile in Puerto Rico

R. Norby, D. Weston, M. Mayes, 2021, Ecology and evolution.

Asymmetrical effects of mesophyll conductance on fundamental photosynthetic parameters and their relationships estimated from leaf gas exchange measurements.

R. Dickinson, Xuejun Dong, B. Law, 2014, Plant, cell & environment.

Innovative Biological Solutions to Challenges in Sustainable Biofuels Production

T. Tschaplinski, D. Weston, G. Tuskan, 2011 .

Multimodal MSI in Conjunction with Broad Coverage Spatially Resolved MS2 Increases Confidence in Both Molecular Identification and Localization.

D. Weston, L. Paša-Tolić, R. Chu, 2018, Analytical chemistry.

Towards resolving the spatial metabolome with unambiguous molecular annotations in complex biological systems by coupling mass spectrometry imaging with structures for lossless ion manipulations.

Yehia M. Ibrahim, Richard D. Smith, D. Weston, 2019, Chemical communications.

Alphaproteobacteria fix nitrogen in a Sphagnum -dominated peat bog using molybdenum-dependent nitrogenase

C. Schadt, D. Weston, J. Kostka, 2017 .

Intermediate-scale community-level flux of CO2 and CH4 in a Minnesota peatland: putting the SPRUCE project in a global context

D. Weston, R. Kolka, P. Hanson, 2016, Biogeochemistry.

Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism

Dana L. Carper, Travis J. Lawrence, J. Grimwood, 2021, The ISME Journal.

Efficient Purging of Deleterious Mutations in Plants with Haploid Selfing

A. Wagner, D. Weston, Xiaohan Yang, 2014, Genome biology and evolution.

Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max.

D. Weston, Xiaohan Yang, L. Gunter, 2011, Plant, cell & environment.

Populus Responses to Edaphic and Climatic Cues: Emerging Evidence from Systems Biology Research

D. Weston, S. Wullschleger, J. Davis, 2009 .

Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome

I. Nookaew, C. Schadt, T. Tschaplinski, 2018, mSystems.

Building Virtual Ecosystems: Computational Challenges for Mechanistic Modeling of Terrestrial Environments Workshop, Germantown, Maryland, March 26–27, 2014

Lois Curfman McInnes, Carl I. Steefel, David Moulton, 2015 .

Scaling nitrogen and carbon interactions: what are the consequences of biological buffering?

T. Tschaplinski, D. Weston, Lindsey E Heady, 2015, Ecology and evolution.

Extending the Arabidopsis flowering paradigm to a mass flowering phenomenon in the tropics

D. Weston, G. Tuskan, S. Wullschleger, 2013, Molecular ecology.

The F-Box Gene Family Is Expanded in Herbaceous Annual Plants Relative to Woody Perennial Plants1[W][OA]

T. Tschaplinski, D. Weston, G. Tuskan, 2008, Plant Physiology.

Functional Genomics of Drought Tolerance in Bioenergy Crops

T. Tschaplinski, Jun Yang, D. Weston, 2014 .

Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness.

C. Schadt, T. Tschaplinski, J. Morrell-Falvey, 2012, Molecular plant-microbe interactions : MPMI.

Opinion Plant Biosystem Design Research Roadmap 1.0

Julie C. Mitchell, Stanton L. Martin, T. Tschaplinski, 2020 .

Evolutionary analyses of non-family genes in plants.

T. Tschaplinski, D. Weston, G. Tuskan, 2013, The Plant journal : for cell and molecular biology.

Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System

I. Nookaew, T. Tschaplinski, D. Weston, 2016, Front. Plant Sci..

Transcript, protein and metabolite temporal dynamics in the CAM plant Agave

Deborah A. Weighill, Daniel A. Jacobson, T. Tschaplinski, 2016, Nature Plants.

Characterization of Rubisco activase from thermally contrasting genotypes of Acer rubrum (Aceraceae).

D. Weston, W. Bauerle, W. V. Baird, 2007, American journal of botany.

Knowledgebase and Computing for Systems Biology 220 KBase : An Integrated Knowledgebase for Predictive Biology and Environmental Research

Rick L. Stevens, Paramvir S. Dehal, B. Davison, 2012 .

Phylogenomics reveals convergent evolution of red-violet coloration in land plants and the origins of the anthocyanin biosynthetic pathway.

J. Schmutz, D. Weston, Adam L Healey, 2020, Molecular phylogenetics and evolution.

Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment

Sagar M. Utturkar, D. Ussery, C. Schadt, 2015, Front. Microbiol..

The Sphagnome Project: enabling ecological and evolutionary insights through a genus-level sequencing project.

Matthew G. Johnson, Daniel A. Jacobson, E. Tuittila, 2018, The New phytologist.

The Sphagnum microbiome: new insights from an ancient plant lineage.

M. Turetsky, D. Weston, J. Kostka, 2016, The New phytologist.

Inhibition and acclimation of C(3) photosynthesis to moderate heat: a perspective from thermally contrasting genotypes of Acer rubrum (red maple).

D. Weston, W. Bauerle, 2007, Tree physiology.

Edinburgh Research Explorer Plant biosystems design research roadmap 1.0

Julie C. Mitchell, Stanton L. Martin, T. Tschaplinski, 2020 .

Habitat‐adapted microbial communities mediate Sphagnum peatmoss resilience to warming

Dana L. Carper, Travis J. Lawrence, J. Grimwood, 2022, The New phytologist.

Atmosphere. Plant respiration in a warmer world.

W. Post, A. King, D. Weston, 2006, Science.

Genome-wide identification and functional prediction of silicon (Si) transporters in poplar (Populus trichocarpa)

Stanton L. Martin, D. Weston, Xiaohan Yang, 2022, Plant Biotechnology Reports.

Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism and photosynthesis

C. Schadt, T. Tschaplinski, J. Morrell-Falvey, 2012 .

A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization

C. Schadt, T. Tschaplinski, J. Morrell-Falvey, 2016, Front. Microbiol..

The Sphagnum genome project: a new model for ecological and evolutionary genomics

Shengqiang, J. Schmutz, D. Weston, 2020 .

Measurement Techniques and Considerations for Determining Thermal Conductivity of Bulk Materials

Terry M. Tritt, David J. Weston, D. Weston, 2004 .

JGI Plant Gene Atlas: An updateable transcriptome resource to improve structural 1 annotations and functional gene descriptions across the plant kingdom

Mojgan Amirebrahimi, S. Shu, J. Grimwood, 2022 .

Modeling the molecular and climatic controls on flowering.

D. Weston, S. Wullschleger, 2012, The New phytologist.

R. Norby, D. Weston, G. Tuskan, 2012 .

Correlating laser-induced breakdown spectroscopy with neutron activation analysis to determine the elemental concentration in the ionome of the Populus trichocarpa leaf

T. Tschaplinski, D. Weston, G. Tuskan, 2017 .

Biosystems Design to Accelerate C3-to-CAM Progression

T. Tschaplinski, D. Weston, G. Tuskan, 2020, Biodesign research.

Plant Respiration in a Warmer World

W. Post, A. King, D. Weston, 2006, Science.

A research agenda for nonvascular photoautotrophs under climate change.

D. Weston, B. Weber, S. Launiainen, 2022, The New phytologist.

Plant Biosystems Design Research Roadmap 1.0

Robert W. Cottingham, Julie C. Mitchell, Jin Zhang, 2020, Biodesign research.

Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics

Aaron M. Duffy, John T. Lovell, Travis J. Lawrence, 2023, Nature Plants.

Phylogenomic structure and speciation in an emerging model: the Sphagnum magellanicum complex (Bryophyta).

Aaron M. Duffy, J. Grimwood, J. Schmutz, 2022, The New phytologist.

Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus

J. Schmutz, T. Korneliussen, D. Weston, 2021, Molecular biology and evolution.

A Dual Role of Strigolactones in Phosphate Acquisition and Utilization in Plants

Jun Yang, D. Weston, G. Tuskan, 2013, International journal of molecular sciences.

The DOE Systems Biology Knowledgebase (KBase)

Fangfang Xia, Rick Stevens, Mark Gerstein, 2016, bioRxiv.

Genomics in a changing arctic: critical questions await the molecular ecologist

D. Weston, S. Wullschleger, C. Iversen, 2015, Molecular ecology.

The physiological acclimation and growth response of Populus trichocarpa to warming.

D. Weston, J. Warren, C. Baraloto, 2021, Physiologia plantarum.

Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave

A. Visel, T. Tschaplinski, Zhong Wang, 2018, BMC Genomics.

EXPANSIVE ROADBED TREATMENT FOR SOUTHERN AFRICA

D. Weston, 1980 .

Newly identified helper bacteria stimulate ectomycorrhizal formation in Populus

D. Weston, G. Tuskan, J. Labbé, 2014, Front. Plant Sci..

Involvement of Arabidopsis RACK1 in Protein Translation and Its Regulation by Abscisic Acid1[C][W][OA]

D. Weston, B. Ellis, Jin‐Gui Chen, 2010, Plant Physiology.

Molybdenum-Based Diazotrophy in a Sphagnum Peatland in Northern Minnesota

C. Schadt, D. Weston, J. Kostka, 2017, Applied and Environmental Microbiology.

Diversity of Active Viral Infections within the Sphagnum Microbiome

D. Weston, S. Wilhelm, D. Pelletier, 2018, Applied and Environmental Microbiology.

Relatively rare root endophytic bacteria drive plant resource allocation patterns and tissue nutrient concentration in unpredictable ways.

A. Classen, D. Weston, D. Pelletier, 2019, American journal of botany.

Leaf endophytes and Populus genotype affect severity of damage from the necrotrophic leaf pathogen, Drepanopeziza populi.

D. Weston, J. Houbraken, G. Newcombe, 2013 .

Climate-resilient agroforestry: physiological responses to climate change and engineering of crassulacean acid metabolism (CAM) as a mitigation strategy.

D. Weston, G. Tuskan, Xiaohan Yang, 2015, Plant, cell & environment.

Initial characterization of shade avoidance response suggests functional diversity between Populus phytochrome B genes.

D. Weston, G. Tuskan, Xiaohan Yang, 2012, The New phytologist.

Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants

Alistair Rogers, Stan D. Wullschleger, David J. Weston, 2008, BMC Systems Biology.

A New Perspective on Ecological Prediction Reveals Limits to Climate Adaptation in a Temperate Tree Species

D. Weston, M. Blumstein, W. Muchero, 2020, Current Biology.

Impacts of intraspecific variability and local adaptation on the ecophysiology of mosses: an example with Sphagnum magellanicum

M. Turetsky, D. Weston, A. J. Shaw, 2019, bioRxiv.

Involvement of Arabidopsis RACK 1 in Protein Translation and Its Regulation by Abscisic Acid 1 [ C ] [ W ] [ OA ]

D. Weston, B. Ellis, Jin‐Gui Chen, 2010 .

Revisiting the sequencing of the first tree genome: Populus trichocarpa.

D. Weston, G. Tuskan, S. DiFazio, 2013, Tree physiology.

amPEPpy 1.0: A portable and accurate antimicrobial peptide prediction tool.

Dana L Carper, Travis J Lawrence, Alyssa A Carrell, 2020, Bioinformatics.

Abscisic acid receptors: past, present and future.

D. Weston, Xiaohan Yang, Jin‐Gui Chen, 2011, Journal of integrative plant biology.

Invited Expert Review Abscisic Acid Receptors: Past, Present and Future

D. Weston, Xiaohan Yang, Jin‐Gui Chen, 2011 .

Root bacterial endophytes alter plant phenotype, but not physiology

A. Classen, D. Weston, D. Pelletier, 2016, PeerJ.

Plant carbohydrate storage: intra- and inter-specific tradeoffs reveal a major life history trait.

N. Holbrook, D. Weston, M. Blumstein, 2022, The New phytologist.

Climate Change Factors Interact to Shift Functional Microbial Composition in Peatlands

D. Weston, D. Pelletier, Christopher L. Kilner, 2023 .

Viral infections likely mediate microbial controls on ecosystem responses to global warming.

D. Weston, S. Wilhelm, J. DeBruyn, 2023, FEMS microbiology ecology.

Nitrogen and phosphorus cycling in an ombrotrophic peatland: a benchmark for assessing change

C. Schadt, S. Bridgham, T. Jicha, 2021, Plant and Soil.

Experimental warming alters the community composition, diversity, and N2 fixation activity of peat moss (Sphagnum fallax) microbiomes

D. Weston, P. Hanson, D. Pelletier, 2019, Global change biology.

Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems

S. Tringe, D. Weston, P. Hanson, 2022, mBio.

Reporter genes confer new-to-nature ornamental traits in plants

T. Tschaplinski, D. Weston, G. Tuskan, 2022, Horticulture research.

Informing models through empirical relationships between foliar phosphorus, nitrogen and photosynthesis across diverse woody species in tropical forests of Panama.

Ivan C. Haworth, Benjamin L Turner, Chonggang Xu, 2017, The New phytologist.

Experimental warming reduces the diversity and functional potential of the Sphagnum microbiome

D. Weston, P. Hanson, D. Pelletier, 2017, bioRxiv.

Leaf absorptance of photosynthetically active radiation in relation to chlorophyll meter estimates among woody plant species

Joe E. Toler, William L. Bauerle, David J. Weston, 2004 .

Biological Parts for Plant Biodesign to Enhance Land-Based Carbon Dioxide Removal

Julie C. Mitchell, T. Tschaplinski, D. Weston, 2021, Biodesign research.

Climate drivers alter nitrogen availability in surface peat and decouple N2 fixation from CH4 oxidation in the Sphagnum moss microbiome

R. Norby, D. Weston, J. Chanton, 2023, Global change biology.

Timing and magnitude of C partitioning through a young loblolly pine (Pinus taeda L.) stand using 13C labeling and shade treatments.

Charles T. Garten, L. Gu, R. Norby, 2011, Tree physiology.

Extending a land-surface model with Sphagnum moss to simulate responses of a northern temperate bog to whole ecosystem warming and elevated CO2

J. Mao, Xiaoying Shi, R. Norby, 2021 .

DISCo-microbe: design of an identifiable synthetic community of microbes.

Dana L Carper, Travis J Lawrence, Alyssa A Carrell, 2020, PeerJ.

Sphagnum diabolicum sp. nov. and S. magniae sp. nov.; morphological variation and taxonomy of the “S. magellanicum complex”

Aaron M. Duffy, D. Weston, S. Robinson, 2023, The Bryologist.

From systems biology to photosynthesis and whole-plant physiology

R. Norby, D. Weston, G. Tuskan, 2012, Plant signaling & behavior.

Intraspecific variation in response to warming across levels of organization: a test with Solidago altissima

A. Classen, N. Sanders, D. Weston, 2011 .

Cultivating the Bacterial Microbiota of Populus Roots

Dana L. Carper, C. Schadt, D. Weston, 2021, mSystems.

The Sphagnum Genome Project

S. Shu, J. Schmutz, D. Weston, 2015 .

Climate Change Factors Interactively Shift Peatland Functional Microbial Composition in an Ecosystem Warming Experiment

Jean P. Gibert, D. Weston, D. Pelletier, 2023, bioRxiv.

JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom

Mojgan Amirebrahimi, S. Shu, J. Grimwood, 2023, Nucleic acids research.

Plant–Microbe Interactions: From Genes to Ecosystems Using Populus as a Model System

Joshua K. Michener, Dana L. Carper, Jessica A. M. Moore, 2021, Phytobiomes Journal.

A rapid assay for assessing bacterial effects on Arabidopsis thermotolerance

D. Weston, M. Doktycz, D. Pelletier, 2023, Plant Methods.

Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max.

D. Weston, Xiaohan Yang, L. Gunter, 2011, Plant, cell & environment.

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world.

Cristóbal N. Aguilar, J. A. Smith, H. Griffiths, 2015, The New phytologist.

Engineering crassulacean acid metabolism to improve water-use efficiency.

T. Tschaplinski, D. Weston, G. Tuskan, 2014, Trends in plant science.

Predicted structural proteome of Sphagnum divinum and proteome-scale annotation

Jerry M. Parks, Russell B. Davidson, J. Skolnick, 2023, Bioinform..

The Sphagnum microbiome: new insights from an ancient plant lineage.

M. Turetsky, D. Weston, J. Kostka, 2016, The New phytologist.

Molybdenum-Based Diazotrophy in a Sphagnum Peatland in Northern Minnesota

C. Schadt, D. Weston, J. Kostka, 2017, Applied and Environmental Microbiology.

Alphaproteobacteria fix nitrogen in a Sphagnum-dominated peat bog using molybdenum-dependent nitrogenase

C. Schadt, D. Weston, J. Kostka, 2017 .

DISCo-microbe: design of an identifiable synthetic community of microbes

Dana L. Carper, Travis J. Lawrence, D. Weston, 2019, PeerJ.

Gene expression profiling: opening the black box of plant ecosystem responses to global change

Erika A. Sudderth, D. Weston, S. Placella, 2009 .

The molecular and ecophysiological roles of Rubisco activase and Rubisco activase likes in photosynthetic thermal regulation of Acer rubrum L. and Arabidopsis thaliana

D. Weston, 2006 .

JGI Plant Gene Atlas: An updateable transcriptome resource to improve structural annotations and functional gene descriptions across the plant kingdom

Mojgan Amirebrahimi, S. Shu, J. Grimwood, 2022, bioRxiv.

The DOE Systems Biology Knowledgebase (KBase)

Robert W. Cottingham, Rick L. Stevens, James J. Davis, 2016, bioRxiv.