Shan Chang

发表

Helix-Based RNA Landscape Partition and Alternative Secondary Structure Determination

Fengfei Wang, Li-Zhen Sun, Tingting Sun, 2019, ACS omega.

Scoring Function Based on Weighted Residue Network

Shan Chang, Xiong Jiao, 2011, International journal of molecular sciences.

Substrate recognition and transport behavior analyses of amino acid antiporter with coarse-grained models.

Shan Chang, Xiong Jiao, Xu-hong Tian, 2010, Molecular bioSystems.

A filter enhanced sampling and combinatorial scoring study for protein docking in CAPRI

Shan Chang, Bin Liu, C. Li, 2007, Proteins.

Network analysis of protein-protein interaction

Shan Chang, Chunhua Li, Xiong Jiao, 2010 .

Amino acid network and its scoring application in protein-protein docking.

Shan Chang, Xiong Jiao, Cun-xin Wang, 2008, Biophysical chemistry.

A holistic molecular docking approach for predicting protein-protein complex structure

Cunxin Wang, B. Liu, Shan Chang, 2010, Science China Life Sciences.

How Does the L884P Mutation Confer Resistance to Type-II Inhibitors of JAK2 Kinase: A Comprehensive Molecular Modeling Study

Youyong Li, Shan Chang, Xiaotian Kong, 2017, Scientific Reports.

Improvement of Prediction Performance With Conjoint Molecular Fingerprint in Deep Learning

Shan Chang, Xiaojun Xu, Liangxu Xie, 2020, Frontiers in Pharmacology.

Exploring the RNA‐bound and RNA‐free human Argonaute‐2 by molecular dynamics simulation method

Shan Chang, Tingjun Hou, Lei Xu, 2017, Chemical biology & drug design.

A HTRF based competitive binding assay for screening specific inhibitors of HIV-1 capsid assembly targeting the C-Terminal domain of capsid.

A. Engelman, Shan Chang, Lei Xu, 2019, Antiviral research.

Importance of protein flexibility in molecular recognition: a case study on Type-I1/2 inhibitors of ALK.

Tingjun Hou, Peichen Pan, Huiyong Sun, 2018, Physical chemistry chemical physics : PCCP.

Reliability of Docking-Based Virtual Screening for GPCR Ligands with Homology Modeled Structures: A Case Study of the Angiotensin II Type I Receptor.

Dan Li, Tingjun Hou, Shan Chang, 2018, ACS chemical neuroscience.

A new 3D graphical representation for similarity/dissimilarity studies of protein sequences

Shan Chang, Kangshun Li, Yan Chen, 2014 .

Regression-based multi-marker analysis for genome-wide association studies using haplotype similarity

Jung-Ying Tzeng, Marie Davidian, M. Davidian, 2007 .

Probing the Behaviour of Cas1-Cas2 upon Protospacer Binding in CRISPR-Cas Systems using Molecular Dynamics Simulations

Shan Chang, Xuhong Tian, Yuan-xin Tian, 2019, Scientific Reports.

Use of Amino Acid-Nucleotide Base Pair Potentials in Screening Protein-DNA Docked Complexes

Shan Chang, X. Tian, Dongmin Liu, 2013 .

Protein–protein docking with binding site patch prediction and network‐based terms enhanced combinatorial scoring

Libin Cao, Xinqi Gong, Shan Chang, 2010, Proteins.

Complex-type-dependent scoring functions in protein-protein docking.

Shan Chang, C. Li, Wei Zu Chen, 2007, Biophysical chemistry.

Scoring Function for the Other-type Protein Complexe

Longzhu Q. Shen, Cunxin Wang, Shan Chang, 2006 .

Network models reveal stability and structural rearrangement of signal recognition particle

Shan Chang, Xiong Jiao, Jian-ping Hu, 2012, Journal of biomolecular structure & dynamics.

Study on the interactions between diketo-acid inhibitors and prototype foamy virus integrase-DNA complex via molecular docking and comparative molecular dynamics simulation methods

Shan Chang, Jian-ping Hu, Hong-qiu He, 2013, Journal of biomolecular structure & dynamics.

Novel natural scaffold as hURAT1 inhibitor identified by 3D-shape-based, docking-based virtual screening approach and biological evaluation.

Shan Chang, Yuan-xin Tian, Yudong Shen, 2021, Bioorganic chemistry.

Study on Molecular Recognition between Euphorbia Factor L713283 and β-Tubulin via Molecular Simulation Methods

Shan Chang, Jian-ping Hu, Hong-qiu He, 2015 .

Molecular Simulation Studies on the Binding Selectivity of Type-I Inhibitors in the Complexes with ROS1 versus ALK

Shan Chang, Tingting Zhang, Jiajie Zhang, 2017, J. Chem. Inf. Model..

Molecular dynamics simulation study reveals potential substrate entry path into γ-secretase/presenilin-1.

Stephen T. C. Wong, Shan Chang, W. Xia, 2015, Journal of structural biology.

Vinculin Motion Modes Analysis with Elastic Network Model

Shan Chang, Xiong Jiao, Mei-wen An, 2011, International journal of molecular sciences.

Two- and three-dimensional QSAR studies on hURAT1 inhibitors with flexible linkers: topomer CoMFA and HQSAR

Shan Chang, Yuan-xin Tian, Jiajie Zhang, 2019, Molecular Diversity.

Evolving model of amino acid networks.

C. Li, Cunxin Wang, Shan Chang, 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.

Potential Role of the Last Half Repeat in TAL Effectors Revealed by a Molecular Simulation Study

Shan Chang, Jian-ping Hu, X. Tian, 2016, BioMed research international.

Unraveling the conformational determinants of LARP7 and 7SK small nuclear RNA by theoretical approaches.

Shan Chang, Huiyong Sun, Jingyu Zhu, 2016, Molecular bioSystems.

Molecular Dynamics Simulations of Ternary Complexes: Comparisons of LEAFY Protein Binding to Different DNA Motifs

Shan Chang, Yuan-xin Tian, Hua Wan, 2015, J. Chem. Inf. Model..

Inhibition Mechanism of Indoleamine 2, 3-Dioxygenase 1 (IDO1) by Amidoxime Derivatives and Its Revelation in Drug Design: Comparative Molecular Dynamics Simulations

Hubing Shi, Shan Chang, Jianping Hu, 2020, Frontiers in Molecular Biosciences.

COVID-19 Docking Server: A meta server for docking small molecules, peptides and antibodies against potential targets of COVID-19

Jianping Hu, Feng Wang, Ming Liu, 2020, Bioinform..

COVID-19 Docking Server: An interactive server for docking small molecules, peptides and antibodies against potential targets of COVID-19

Ming Liu, Shan Chang, Jian-ping Hu, 2020, 2003.00163.

Multitask deep networks with grid featurization achieve improved scoring performance for protein–ligand binding

Lei Xu, Li Meng, Shan Chang, 2020, Chemical biology & drug design.

Discovery of Novel Androgen Receptor Ligands by Structure-based Virtual Screening and Bioassays

Shan Chang, Qin Tang, Lei Xu, 2018, Genom. Proteom. Bioinform..

Probing the Behaviour of Cas1-Cas2 upon Protospacer Binding in CRISPR-Cas Systems using Molecular Dynamics Simulations

Shan Chang, Xuhong Tian, Yuan-xin Tian, 2019, Scientific Reports.

How Does the L884P Mutation Confer Resistance to Type-II Inhibitors of JAK2 Kinase: A Comprehensive Molecular Modeling Study

Youyong Li, Shan Chang, Xiaotian Kong, 2017, Scientific Reports.

Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment

Elodie Laine, Alessandra Carbone, Adam Liwo, 2019, Proteins.

Stability and Folding Behavior Analysis of Zinc-Finger Using Simple Models

Shan Chang, Xiong Jiao, Yan Chen, 2010, International journal of molecular sciences.

CoDockPP: A Multistage Approach for Global and Site-Specific Protein-Protein Docking

Ren Kong, Shan Chang, Fengfei Wang, 2019, J. Chem. Inf. Model..

An overview of computational tools of nucleic acid binding site prediction for site-specific proteins and nucleases.

Shan Chang, Hua Wan, Jian-Ming Li, 2019, Protein and peptide letters.

Insight into the selective binding mechanism of DNMT1 and DNMT3A inhibitors: a molecular simulation study.

Shan Chang, S. Zeng, Feng Zhu, 2019, Physical chemistry chemical physics : PCCP.

Importance of protein flexibility on molecular recognition: modeling binding mechanisms of aminopyrazine inhibitors to Nek2.

Dan Li, Shan Chang, Wenfang Zhou, 2018, Physical chemistry chemical physics : PCCP.

Inhibition of programmed cell death protein ligand-1 (PD-L1) by benzyl ether derivatives: analyses of conformational change, molecular recognition and binding free energy

Hubing Shi, Shan Chang, Jinke Gu, 2019, Journal of biomolecular structure & dynamics.

Prediction of conotoxin type based on long short-term memory network.

Shan Chang, Feng Wang, Dashun Wei, 2021, Mathematical biosciences and engineering : MBE.

Molecular dynamics simulations of wild type and mutants of human complement receptor 2 complexed with C3d.

Shan Chang, Hua Wan, Jian-ping Hu, 2013, Physical chemistry chemical physics : PCCP.

An Analysis of Protein Conservation Residues Network

C. Li, Cunxin Wang, Shan Chang, 2007, 2007 1st International Conference on Bioinformatics and Biomedical Engineering.

Molecular dynamics simulations of wild type and mutant of Pin1 peptidyl-prolyl isomerase

Shan Chang, R. Kong, Lianhua Piao, 2016 .

Identify old drugs as selective bacterial β‐GUS inhibitors by structural‐based virtual screening and bio‐evaluations

Shan Chang, R. Kong, Jiyong Liu, 2019, Chemical biology & drug design.

The selenium-containing drug ebselen potently disrupts LEDGF/p75-HIV-1 integrase interaction by targeting LEDGF/p75

Shan Chang, Lei Xu, Da-Wei Zhang, 2020, Journal of enzyme inhibition and medicinal chemistry.

Improving de novo Molecule Generation by Embedding LSTM and Attention Mechanism in CycleGAN

Shan Chang, Liangxu Xie, Lei Xu, 2021, Frontiers in Genetics.

Recent Progresses of Deep Learning in Drug Discovery.

Shan Chang, Lei Xu, Feng Wang, 2021, Current pharmaceutical design.

Exploring the molecular basis of RNA recognition by the dimeric RNA-binding protein via molecular simulation methods

Shan Chang, Tingjun Hou, Lei Xu, 2016, RNA biology.

Molecular dynamics simulations of wild type and mutants of botulinum neurotoxin A complexed with synaptic vesicle protein 2C.

Shan Chang, Hua Wan, Feng Wang, 2015, Molecular bioSystems.

Applications of Molecular Simulation in the Discovery of Anti-tuberculosis Drugs: A Review.

Wei Liu, Xiao Yan, Shan Chang, 2019, Protein and peptide letters.

Allosteric and transport behavior analyses of a fucose transporter with network models

Shan Chang, Xiong Jiao, Jianping Hu, 2011 .

Substrate Recognition and Motion Mode Analyses of PFV Integrase in Complex with Viral DNA via Coarse-Grained Models

Ming Liu, Shan Chang, D. Tang, 2013, PloS one.

Molecular Dynamics Simulations of Wild Type and Mutants of SAPAP in Complexed with Shank3

Shan Chang, R. Kong, Lianhua Piao, 2019, International journal of molecular sciences.

Molecular Dynamics Simulations of Wild Type and Mutants of SAPAP in Complexed with Shank 3

Shan Chang, R. Kong, Lianhua Piao, 2019 .

A Parallel Molecular Docking Approach Based on Graphic Processing Unit

Shan Chang, Xu-hong Tian, Zhi-wei Feng, 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering.

COVID-19 Imaging-based AI Research - A Literature Review.

Shan Chang, Liangxu Xie, R. Kong, 2021, Current medical imaging.

Molecular Dynamics Simulations of DNA-Free and DNA-Bound TAL Effectors

Shan Chang, Hua Wan, Jian-ping Hu, 2013, PloS one.

Understanding peptide competitive inhibition of botulinum neurotoxin a binding to SV2 protein via molecular dynamics simulations

Shan Chang, Hong-qiu He, Hua Wan, 2015, Biopolymers.

Understanding the folding and stability of a designed WW domain protein with replica exchange molecular dynamics simulations

Shan Chang, Xiong Jiao, Jianping Hu, 2013 .

Two- and three-dimensional QSAR studies on hURAT1 inhibitors with flexible linkers: topomer CoMFA and HQSAR

Shan Chang, Yuan-xin Tian, Jiajie Zhang, 2019, Molecular Diversity.

Template‐based modeling and ab‐initio docking using CoDock in CAPRI

Hang Shi, Ren Kong, Shan Chang, 2020, Proteins.

Prediction of human protein-protein interaction by a domain-based approach.

Jie Song, Shan Chang, Xiong Jiao, 2016, Journal of theoretical biology.

Study on the interactions between diketo-acid inhibitors and prototype foamy virus integrase-DNA complex via molecular docking and comparative molecular dynamics simulation methods

Shan Chang, Hong-qiu He, Dian-Yong Tang, 2013, Journal of biomolecular structure & dynamics.

Although a number of approaches are available for predicting the docking of protein-protein, the treatment of docking of small ligands and proteins with other proteins, the treatment of the docking of nucleic acids onto proteins lags

Shan Chang, Dongmin Liu, Jian Chen, 2022 .

Construction and application of the weighted amino acid network based on energy.

Shan Chang, Xiong Jiao, C. Li, 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.