N. Fujita

发表

The minus 35-recognition region of Escherichia coli sigma 70 is inessential for initiation of transcription at an "extended minus 10" promoter.

A. Kumar, R. Malloch, N. Fujita, 1993, Journal of molecular biology.

Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase.

N. Fujita, H. Maeda, A. Ishihama, 2000, Nucleic acids research.

Characterization of CitA-CitB Signal Transduction Activating Genes Involved in Anaerobic Citrate Catabolism in Escherichia coli

N. Ogasawara, T. Oshima, N. Fujita, 2009, Bioscience, biotechnology, and biochemistry.

Novel Roles of cAMP Receptor Protein (CRP) in Regulation of Transport and Metabolism of Carbon Sources

N. Fujita, A. Ishihama, T. Shimada, 2011, PloS one.

Systematic search for the Cra‐binding promoters using genomic SELEX system

Akira Ishihama, N. Fujita, A. Ishihama, 2005, Genes to cells : devoted to molecular & cellular mechanisms.

Mapping the σ70 subunit contact sites on Escherichia coli RNA polymerase with a σ70-conjugated chemical protease

Akira Ishihama, K. Murakami, N. Fujita, 1998 .

The mediator for stringent control, ppGpp, binds to the β‐subunit of Escherichia coli RNA polymerase

N. Fujita, A. Ishihama, A. Ishihama, 1998, Genes to cells : devoted to molecular & cellular mechanisms.

Ambidextrous transcriptional activation by SoxS: requirement for the C‐terminal domain of the RNA polymerase alpha subunit in a subset of Escherichia coli superoxide‐inducible genes

N. Fujita, A. Ishihama, K. Jair, 1996, Molecular microbiology.

Structure and probable genetic location of a "ribosome modulation factor" associated with 100S ribosomes in stationary-phase Escherichia coli cells.

N. Fujita, A. Ishihama, Y. Yamazaki, 1990, Proceedings of the National Academy of Sciences of the United States of America.

Growth phase-dependent modification of RNA polymerase in Escherichia coli

N. Fujita, A. Ishihama, A. Wada, 1991, Molecular and General Genetics MGG.

Mapping of Subunit-Subunit Contact Surfaces on the β′ Subunit of Escherichia coli RNA Polymerase*

N. Fujita, A. Ishihama, A. Ishihama, 2000, The Journal of Biological Chemistry.

Molecular anatomy of the β′ subunit of the E. coli RNA polymerase: identification of regions involved in polymerase assembly

N. Fujita, A. Ishihama, Jianying Luo, 1996, Genes to cells : devoted to molecular & cellular mechanisms.

Asymmetric arrangement of two alpha subunits within Escherichia coli RNA polymerase. Involvement of one alpha subunit in contact with cAMP receptor protein.

N. Fujita, A. Ishihama, C. Zou, 1994, Journal of molecular biology.

Mapping the cAMP receptor protein contact site on the α subunit of Escherichia coli RNA polymerase

N. Fujita, A. Ishihama, K. Igarashi, 1992, Molecular microbiology.

Identification of a subunit assembly domain in the alpha subunit of Escherichia coli RNA polymerase.

N. Fujita, A. Ishihama, K. Igarashi, 1991, Journal of Molecular Biology.

Assambley of amber fragment of the β subunit of Escherichia coli RNA polymerase

N. Fujita, A. Ishihama, R. Glass, 1988 .

Subunit assembly and metabolic stability of E. coli RNA polymerase

N. Fujita, A. Ishihama, A. Ishihama, 1987, Proteins.

Interactions between the cyclic AMP receptor protein and the alpha subunit of RNA polymerase at the Escherichia coli galactose operon P1 promoter.

N. Fujita, A. Ishihama, S. Busby, 1994, Nucleic acids research.

Purification and regulatory properties of MarA protein, a transcriptional activator of Escherichia coli multiple antibiotic and superoxide resistance promoters

N. Fujita, A. Ishihama, K. Jair, 1995, Journal of bacteriology.

GalR-mediated repression and activation of hybrid lacUV5 promoter: differential contacts with RNA polymerase.

N. Fujita, A. Ishihama, S. Adhya, 1998, Gene.

Transcriptional activation of promoters of the superoxide and multiple antibiotic resistance regulons by Rob, a binding protein of the Escherichia coli origin of chromosomal replication

K. Skarstad, N. Fujita, A. Ishihama, 1996, Journal of bacteriology.

The primary structure of phosphoenolpyruvate carboxylase of Escherichia coli. Nucleotide sequence of the ppc gene and deduced amino acid sequence.

N. Fujita, K. Izui, T. Miwa, 1984, Journal of biochemistry.

Involvement of the RNA polymerase α subunit C‐terminal region in co‐operative interaction and transcriptional activation with OxyR protein

N. Fujita, A. Ishihama, A. Ishihama, 1993, Molecular microbiology.

Regulation of the Escherichia coli rmf gene encoding the ribosome modulation factor: growth phase‐ and growth rate‐dependent control.

N. Fujita, A. Ishihama, M. Yamagishi, 1993, The EMBO journal.

Specific fluorescent labeling of two functional domains in RNA polymerase α subunit

K. Murakami, N. Fujita, A. Ishihama, 1998 .

Expression of the leuX gene in Escherichia coli. Regulation at transcription and tRNA processing steps.

N. Fujita, A. Ishihama, T. Nomura, 1987, Journal of molecular biology.

Negative regulation of the bolA1p of Escherichia coli K-12 by the transcription factor OmpR for osmolarity response genes.

R. Utsumi, N. Fujita, A. Ishihama, 2000, FEMS microbiology letters.

Solution Structure of the Activator Contact Domain of the RNA Polymerase α Subunit

M. Shirakawa, Y. Kyōgoku, N. Fujita, 1995, Science.

Functional topology of the bacterial RNA polymerase. Multipoint monitoring by a fluorescent probe

N. Fujita, A. Ishihama, O. Ozoline, 1999 .

Promoter selectivity of E. coli RNA polymerase: analysis of the promoter system of convergently-transcribed dnaQ-rnh genes.

N. Fujita, A. Ishihama, T. Nomura, 1985, Nucleic acids research.

Repression andactivation oftranscription byGal andLacrepressors:involvement ofalphasubunit of RNApolymerase

N. Fujita, A. Ishihama, S. Adhya, 1995 .

Promoter selectivity of Escherichia coli RNA polymerase. Purification and properties of holoenzyme containing the heat-shock sigma subunit.

N. Fujita, A. Ishihama, T. Nomura, 1987, The Journal of biological chemistry.

Phosphoenolpyruvate carboxylase of Escherichia coli. Specificity of some compounds as activators at the site for fructose 1,6-bisphosphate, one of the allosteric effectors.

N. Fujita, K. Izui, H. Katsuki, 1984, Journal of biochemistry.

Reaction mechanism of phosphoenolpyruvate carboxylase. Bicarbonate-dependent dephosphorylation of phosphoenol-alpha-ketobutyrate.

N. Fujita, T. Nishino, K. Izui, 1984, Biochemistry.

The interaction between σS, the stationary phase σ factor, and the core enzyme of Escherichia coli RNA polymerase

F. Colland, N. Fujita, A. Ishihama, 2002, Genes to cells : devoted to molecular & cellular mechanisms.

Location of the C-terminal domain of the RNA polymerase alpha subunit in different open complexes at the Escherichia coli galactose operon regulatory region.

N. Fujita, A. Ishihama, S. Busby, 1996, Nucleic acids research.

Preparation and preliminary X-ray diffraction analysis of crystals of bacterial flagellar sigma factor σ28 in complex with the σ28-binding region of its antisigma factor, FlgM

N. Fujita, A. Ishihama, T. Hakoshima, 2007 .

Conservation of sigma–core RNA polymerase proximity relationships between the enhancer‐independent and enhancer‐dependent sigma classes

N. Fujita, A. Ishihama, M. Buck, 2000, The EMBO journal.

Phosphoenolpyruvate carboxylase of Escherichia coli. Hydrophobic chromatography using specific elution with allosteric inhibitor.

N. Fujita, K. Izui, H. Katsuki, 1982, Journal of biochemistry.

Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region.

H. Mori, N. Fujita, A. Ishihama, 1994, Nucleic acids research.

Identification of the cpdA Gene Encoding Cyclic 3′,5′-Adenosine Monophosphate Phosphodiesterase in Escherichia coli*

N. Fujita, A. Ishihama, T. Ogura, 1996, The Journal of Biological Chemistry.

Active recruitment of σ54‐RNA polymerase to the Pu promoter of Pseudomonas putida: role of IHF and αCTD

V. de Lorenzo, N. Fujita, A. Ishihama, 1998, The EMBO journal.

Repression and activation of transcription by Gal and Lac repressors: involvement of alpha subunit of RNA polymerase.

N. Fujita, A. Ishihama, S. Adhya, 1995, The EMBO journal.

Systematic sequencing of the Escherichia coli genome: analysis of the 0- 2.4 min region

Nobuyuki Fujita, Hirotada Mori, Takashi Yura, 1992, Nucleic Acids Res..

Mapping of the OxyR protein contact site in the C-terminal region of RNA polymerase alpha subunit

N. Fujita, A. Ishihama, C. Zou, 1995, Journal of bacteriology.

Mapping of the OxyR Protein Contact Site in the C-Terminal Region of RNA Polymerase (cid:97) Subunit

N. Fujita, A. Ishihama, C. Zou, 1995 .

Epitope mapping and functional characterization of monoclonal antibodies specific for the alpha subunit of Escherichia coli RNA polymerase.

N. Fujita, A. Ishihama, K. Igarashi, 1994, The Journal of biological chemistry.

Repression of deoP2 in Escherichia coli by CytR: conversion of a transcription activator into a repressor

H. Choy, N. Fujita, A. Ishihama, 2001, The EMBO journal.

Promoter selectivity of Escherichia coli RNA polymerase E sigma 70 and E sigma 38 holoenzymes. Effect of DNA supercoiling.

N. Fujita, A. Ishihama, S. Kusano, 1996, The Journal of biological chemistry.

Role of the sigma 70 subunit of Escherichia coli RNA polymerase in transcription activation.

K. Makino, A. Kumar, R. Malloch, 1994, Journal of molecular biology.

Sequence analysis of two temperature-sensitive mutations in the alpha subunit gene (rpoA) of Escherichia coli RNA polymerase.

N. Fujita, A. Ishihama, K. Igarashi, 1990, Nucleic acids research.

Intracellular Concentrations of 65 Species of Transcription Factors with Known Regulatory Functions in Escherichia coli

N. Fujita, A. Ishihama, Kayoko Yamada, 2014, Journal of bacteriology.

Anaerobic Regulation of Citrate Fermentation by CitAB in Escherichia coli

Naotake Ogasawara, Akira Ishihama, Taku Oshima, 2008, Bioscience, biotechnology, and biochemistry.

Micrococcus luteus, a bacterium with a high genomic G+C content, contains Escherichia coli-type promoters

Akira Ishihama, T. Ohama, S. Osawa, 1989, Molecular and General Genetics MGG.

Genetic studies on the β subunit of Escherichia coli RNA polymerase

V. Nene, N. Fujita, A. Ishihama, 1986, Molecular and General Genetics MGG.

DNA supercoiling and temperature shift affect the promoter activity of the Escherichia coli rpoH gene encoding the heat-shock sigma subunit of RNA polymerase

N. Fujita, A. Ishihama, R. Ueshima, 2004, Molecular and General Genetics MGG.

Genetic studies on the beta subunit of Escherichia coli RNA polymerase. VIII. Localisation of a region involved in promoter selectivity.

V. Nene, N. Fujita, A. Ishihama, 1986, Molecular & general genetics : MGG.

Heterogeneity of the principal sigma factor in Escherichia coli: the rpoS gene product, sigma 38, is a second principal sigma factor of RNA polymerase in stationary-phase Escherichia coli.

Akira Ishihama, N. Fujita, A. Ishihama, 1993, Proceedings of the National Academy of Sciences of the United States of America.

A Carboxy-Terminal 16-Amino-Acid Region of ς38 ofEscherichia coli Is Important for Transcription under High-Salt Conditions and Sigma Activities In Vivo

N. Fujita, A. Ishihama, Kan Tanaka, 2000, Journal of bacteriology.

Positioning of σS, the stationary phase σ factor, in Escherichia coli RNA polymerase–promoter open complexes

F. Colland, N. Fujita, A. Ishihama, 1999 .

Reconstitution of RNA polymerase.

N. Fujita, A. Ishihama, 1996, Methods in enzymology.

Novel mode of transcription regulation of divergently overlapping promoters by PhoP, the regulator of two‐component system sensing external magnesium availability

Akira Ishihama, Kaneyoshi Yamamoto, R. Utsumi, 2002, Molecular microbiology.

Promoter selectivity of Escherichia coli RNA polymerase: omega factor is responsible for the ppGpp sensitivity.

N. Fujita, A. Ishihama, K. Igarashi, 1989, Nucleic acids research.

Heat-shock induction of RNA polymerase sigma-32 synthesis in Escherichia coli: Transcriptional control and a multiple promoter system

N. Fujita, A. Ishihama, 1987, Molecular and General Genetics MGG.

RNA polymerase sigma-related proteins in Escherichia coli: Detection by antibodies against a synthetic peptide

S. Ueda, N. Fujita, A. Ishihama, 1987, Molecular and General Genetics MGG.

Promoter selectivity of the stationary-phase forms of Escherichia coli RNA polymerase and conversion in vitro of the S1 form enzyme into a log-phase enzyme-like form.

N. Fujita, A. Ishihama, A. Wada, 1992, Nucleic acids research.

Organization of open complexes at Escherichia coli promoters. Location of promoter DNA sites close to region 2.5 of the sigma70 subunit of RNA polymerase.

N. Fujita, S. Busby, S. Minchin, 1999, The Journal of biological chemistry.

Functional map of the alpha subunit of Escherichia coli RNA polymerase. Deletion analysis of the amino-terminal assembly domain.

M. Kimura, N. Fujita, A. Ishihama, 1995, Journal of molecular biology.

Mode of DNA-protein interaction between the C-terminal domain of Escherichia coli RNA polymerase alpha subunit and T7D promoter UP element.

N. Fujita, A. Ishihama, O. Ozoline, 2001, Nucleic acids research.

Mapping the promoter DNA sites proximal to conserved regions of sigma 70 in an Escherichia coli RNA polymerase-lacUV5 open promoter complex.

K. Murakami, N. Fujita, A. Ishihama, 1998, Biochemistry.

A partially functional 245-amino-acid internal deletion derivative of Escherichia coli sigma 70

A. Kumar, N. Fujita, R. Hayward, 1995, Journal of bacteriology.

A Partially Functional 245-Amino-Acid Internal Deletion Derivative of Escherichia coli (cid:115) 70

N. Fujita, A. Ishihama, R. Hayward, 1995 .

PI-PfuI and PI-PfuII, intein-coded homing endonucleases from Pyrococcus furiosus. I. Purification and identification of the homing-type endonuclease activities.

N. Fujita, K. Komori, Y. Ishino, 1999, Nucleic acids research.

Purification and regulatory properties of MarA protein, a transcriptional activator of Escherichia coli multiple antibiotic and superoxide resistance promoters

N. Fujita, A. Ishihama, K. Jair, 1995, Journal of bacteriology.

Transcription factor recognition surface on the RNA polymerase alpha subunit is involved in contact with the DNA enhancer element.

K. Murakami, N. Fujita, A. Ishihama, 1996, The EMBO journal.

Promoter selectivity of Escherichia coli RNA polymerase: alteration by fMet-tRNAfMet.

N. Fujita, A. Ishihama, T. Nomura, 1986, Nucleic acids research.

Novel mode of transcription regulation by SdiA, an Escherichia coli homologue of the quorum‐sensing regulator

N. Fujita, A. Ishihama, Kaneyoshi Yamamoto, 2001, Molecular microbiology.

[9] Reconstitution of RNA polymerase

N. Fujita, A. Ishihama, 1996 .

The C-terminal region of the alpha subunit of Escherichia coli RNA polymerase is required for transcriptional activation of the flagellar level II operons by the FlhD/FlhC complex

X. Liu, P. Matsumura, N. Fujita, 1995, Journal of bacteriology.

Genomic SELEX for the genome-wide search of regulation targets by transcription factors: SELEX-clos and SELEX-chip procedures

N. Fujita, A. Ishihama, T. Shimada, 2009, 2009 International Symposium on Micro-NanoMechatronics and Human Science.

Locations of genes encoding alkyl hydroperoxide reductase on the physical map of the Escherichia coli K-12 genome

N. Fujita, D. A. Smillie, R. Hayward, 1992, Journal of bacteriology.

Structural map of the alpha subunit of Escherichia coli RNA polymerase: structural domains identified by proteolytic cleavage.

N. Fujita, A. Ishihama, T. Negishi, 1995, Journal of molecular biology.

Two Extracytoplasmic Function Sigma Subunits, ςE and ςFecI, of Escherichia coli: Promoter Selectivity and Intracellular Levels

N. Fujita, A. Ishihama, H. Maeda, 2000, Journal of bacteriology.

DNase I footprinting, DNA bending and in vitro transcription analyses of ClcR and CatR interactions with the clcABD promoter: evidence of a conserved transcriptional activation mechanism

N. Fujita, A. Ishihama, A. Chakrabarty, 1997, Molecular microbiology.

Evolutionary dynamics of tryptophan tRNAs in Mycoplasma capricolum

S. Osawa, N. Fujita, A. Ishihama, 1988, Molecular and General Genetics MGG.

Involvement of the RNA Polymerase α-Subunit C-Terminal Domain in LuxR-Dependent Activation of the Vibrio fischeri Luminescence Genes

E. Greenberg, N. Fujita, A. Ishihama, 1999, Journal of bacteriology.

RNA Polymerase

N. Fujita, S. Adhya, T. Aki, 2020, Definitions.

Interactions between the Escherichia coli cyclic AMP receptor protein and RNA polymerase at Class II promoters

N. Fujita, A. Ishihama, S. Busby, 1993, Molecular microbiology.

The TyrR protein of Escherichia coli is a class I transcription activator

A J Pittard, N. Fujita, A. Ishihama, 1995, Journal of bacteriology.

Repression of in vitro transcription of the Escherichia coli fnr and nar X genes by FNR protein

N. Fujita, A. Ishihama, T. Hattori, 1994, FEBS letters.