Charles Girardot

发表

Combinatorial binding predicts spatio-temporal cis-regulatory activity

E. Furlong, J. Gagneur, R. Zinzen, 2009, Nature.

A core transcriptional network for early mesoderm development in Drosophila melanogaster.

E. Furlong, M. Brehme, V. Štolc, 2007, Genes & development.

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

E. Furlong, R. Zinzen, Charles Girardot, 2012, Nature Genetics.

Subtle Changes in Motif Positioning Cause Tissue-Specific Effects on Robustness of an Enhancer's Activity

Lars Hufnagel, Charles Girardot, Eileen E. M. Furlong, 2014, PLoS genetics.

Analysis of variation at transcription factor binding sites in Drosophila and humans

Gautier Koscielny, Manolis Kellis, Ewan Birney, 2012, Genome Biology.

A Transcription Factor Collective Defines Cardiac Cell Fate and Reflects Lineage History

E. Birney, E. Furlong, Charles Girardot, 2012, Cell.

Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis

E. Furlong, Charles Girardot, Martina Braun, 2014, Development.

Drosophila melanogaster A core transcriptional network for early mesoderm development in data

Furlong, M. Brehme, V. Štolc, 2007 .

Elucidation of an Archaeal Replication Protein Network to Generate Enhanced PCR Enzymes*

Michael Albers, Hartmut Voss, Ingo Kober, 2002, The Journal of Biological Chemistry.

The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection

E. Furlong, Charles Girardot, M. Robinson‐Rechavi, 2020, bioRxiv.

The Role of Chromatin Accessibility in cis-Regulatory Evolution

E. Furlong, D. Garfield, Charles Girardot, 2018, bioRxiv.

The Role of Chromatin Accessibility in cis-Regulatory Evolution

E. Furlong, D. Garfield, Charles Girardot, 2018, bioRxiv.

Lineage-Resolved Enhancer and Promoter Usage during a Time Course of Embryogenesis.

Jacob F. Degner, Olga M. Sigalova, E. Furlong, 2020, Developmental cell.

Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition

Charles Girardot, Christoph P. Dotter, J. Morandell, 2018, Nature Neuroscience.

Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins

J. Krijgsveld, Charles Girardot, M. Rafiee, 2016, Molecular cell.

Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements

E. Furlong, Raquel Marco-Ferreres, Charles Girardot, 2017, Genes & development.

CTCF, BEAF-32, and CP190 are not required for the establishment of TADs in early Drosophila embryos but have locus-specific roles

E. Furlong, A. Rabinowitz, Charles Girardot, 2022, bioRxiv.

A stem cell zoo uncovers intracellular scaling of developmental tempo across mammals

Charles Girardot, Miki Ebisuya, Mitsuhiro Matsuda, 2022, bioRxiv.

Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity

E. Furlong, Charles Girardot, S. Sinha, 2017, eLife.

Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila.

Julien Gagneur, Charles Girardot, Eileen E M Furlong, 2008, Developmental cell.

Model-based method for transcription factor target identification with limited data

Antti Honkela, Magnus Rattray, Charles Girardot, 2010, Proceedings of the National Academy of Sciences.

A conserved role for Snail as a potentiator of active transcription

E. Furlong, A. Stark, R. Zinzen, 2014, Genes & development.

Expanding the mesodermal transcriptional network by genome‐wide identification of Zinc finger homeodomain 1 (Zfh1) targets

E. Furlong, Tsunglin Liu, Charles Girardot, 2019, FEBS letters.

4DXpress: a database for cross-species expression pattern comparisons

Thorsten Henrich, Joachim Wittbrodt, Peer Bork, 2007, Nucleic Acids Res..

Opbp is a new architectural/insulator protein required for ribosomal gene expression

E. Furlong, Charles Girardot, Lucia Ciglar, 2017, Nucleic acids research.

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers

Charles Girardot, Eileen E. M. Furlong, Shu-Yi Su, 2016, BMC Bioinformatics.

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers

E. Furlong, Charles Girardot, Shu-Yi Su, 2016, BMC Bioinformatics.

Identification and in silico modeling of enhancers reveals new features of the cardiac differentiation network

E. Furlong, Charles Girardot, Yad Ghavi-Helm, 2016, Development.

Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes

Denis Thieffry, Aitor González, Abibatou Mbodj, 2016, PLoS Comput. Biol..

Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes

E. Furlong, D. Thieffry, Charles Girardot, 2016, PLoS Comput. Biol..

Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity

E. Furlong, Charles Girardot, S. Sinha, 2017, eLife.

Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition

Charles Girardot, Christoph P. Dotter, J. Morandell, 2018, Nature Neuroscience.

Chromatin gene-gene loops support the cross-regulation of genes with related function.

E. Furlong, Raquel Marco-Ferreres, Charles Girardot, 2023, Molecular cell.