J. Whitaker

发表

Integrative analysis of 111 reference human epigenomes

Michael Q. Zhang, Nicholas A. Sinnott-Armstrong, Michael T. McManus, 2015, Nature.

Constructing 3D interaction maps from 1D epigenomes

Wei Wang, J. Whitaker, Bo Ding, 2016, Nature Communications.

Computational schemes for the prediction and annotation of enhancers from epigenomic assays.

Wei Wang, Andre Wildberg, Wei Wang, 2015, Methods.

Predicting enhancer transcription and activity from chromatin modifications

Wei Wang, J. Whitaker, Yun Zhu, 2013, Nucleic acids research.

Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells

Michael Q. Zhang, Matthew D. Schultz, Nicholas E. Propson, 2013, Cell.

Human Body Epigenome Maps Reveal Noncanonical DNA Methylation Variation

Matthew D. Schultz, Anthony D. Schmitt, T. Sejnowski, 2015, Nature.

Identification of DNA motifs that regulate DNA methylation

Jun Wang, Wei Wang, Shicai Fan, 2019, bioRxiv.

Predicting the Human Epigenome from DNA Motifs

Wei Wang, J. Whitaker, Zhao Chen, 2014, Nature Methods.

Identification of DNA motifs that regulate DNA methylation

Jun Wang, Wei Wang, Shicai Fan, 2019, bioRxiv.

DNA methylome signature in rheumatoid arthritis

Wei Wang, J. Whitaker, G. Firestein, 2012, Annals of the rheumatic diseases.

Transferomics: Seeing the Evolutionary Forest Using Phylogenetic Trees

D. Westhead, J. Whitaker, 2010 .

Alio intuitu: the automated reconstruction of the metabolic networks of parasites.

D. Westhead, G. McConkey, J. Whitaker, 2009, Trends in parasitology.

The transferome of metabolic genes explored: analysis of the horizontal transfer of enzyme encoding genes in unicellular eukaryotes

D. Westhead, G. McConkey, J. Whitaker, 2009, Genome Biology.

Epipolymorphisms associated with the clinical outcome of autoimmune arthritis affect CD4+ T cell activation pathways

Wei Wang, R. Spreafico, J. Whitaker, 2016, Proceedings of the National Academy of Sciences.

Integrative genomic deconvolution of rheumatoid arthritis GWAS loci into gene and cell type associations

Radu Dobrin, J. Whitaker, M. Curran, 2016, Genome Biology.

LBH Gene Transcription Regulation by the Interplay of an Enhancer Risk Allele and DNA Methylation in Rheumatoid Arthritis

Wei Wang, J. Whitaker, G. Firestein, 2016, Arthritis & rheumatology.

Correction: Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation

Matthew D. Schultz, Anthony D. Schmitt, T. Sejnowski, 2015, Nature.

DNA Methylome Signature in Synoviocytes From Patients With Early Rheumatoid Arthritis Compared to Synoviocytes From Patients With Longstanding Rheumatoid Arthritis

Wei Wang, P. Tak, J. Whitaker, 2015, Arthritis & rheumatology.

Integrative analysis of 111 reference human epigenomes Open

David Haussler, Michael Q. Zhang, Gerald T. Quon, 2015, Nat..

Epigenomic Analysis of Multi-lineage Differentiation of Human Embryonic Stem Cells.

Michael Q. Zhang, Nicholas E. Propson, Lee E. Edsall, 2013 .

Prediction of horizontal gene transfers in eukaryotes: approaches and challenges.

David R Westhead, D. Westhead, G. McConkey, 2009, Biochemical Society transactions.

An imprinted rheumatoid arthritis methylome signature reflects pathogenic phenotype

R. Shoemaker, Wei Wang, J. Whitaker, 2013, Genome Medicine.

The Rheumatoid Arthritis Risk Gene LBH Regulates Growth in Fibroblast‐like Synoviocytes

Wei Wang, J. Whitaker, W. Bugbee, 2015, Arthritis & rheumatology.

Integrative Omics Analysis of Rheumatoid Arthritis Identifies Non-Obvious Therapeutic Targets

Wei Wang, J. Whitaker, G. Firestein, 2015, PloS one.

Global identification of transcriptional regulators of pluripotency and differentiation in embryonic stem cells

B. Ren, Kyoung-Jae Won, R. Shoemaker, 2012, Nucleic acids research.

STAR: an integrated solution to management and visualization of sequencing data

Yun Zhu, Wei Wang, Jie Liu, 2013, Bioinform..

Epigenomic analysis reveals DNA motifs regulating histone modifications in human and mouse

Wei Wang, J. Whitaker, Zhao Chen, 2019, Proceedings of the National Academy of Sciences.

Familial skewed X inactivation: a molecular trait associated with high spontaneous-abortion rate maps to Xq28.

U. Surti, E. Hoffman, J. Whitaker, 1997, American journal of human genetics.

Perspectives on ENCODE

Xintao Wei, Christopher B. Burge, Jason Liu, 2020, Nature.

Abnormal PTPN11 enhancer methylation promotes rheumatoid arthritis fibroblast-like synoviocyte aggressiveness and joint inflammation.

Wei Wang, N. Bottini, J. Whitaker, 2016, JCI insight.

Comprehensive epigenetic landscape of rheumatoid arthritis fibroblast-like synoviocytes

Wei Wang, E. Palescandolo, J. Whitaker, 2018, Nature Communications.

Inhibition of microglial fatty acid amide hydrolase modulates LPS stimulated release of inflammatory mediators

J. Whitaker, C. Tham, Michael Webb, 2007, FEBS letters.

The Transcriptional Response to DNA-Double-Strand Breaks in Physcomitrella patens

J. Whitaker, Y. Kamisugi, A. Cuming, 2016, PloS one.

Mutagen structure and transcriptional response: Induction of distinct transcriptional profiles in Salmonella TA100 by the drinking‐water mutagen MX and its homologues

J. Whitaker, D. DeMarini, C. Swartz, 2009, Environmental and molecular mutagenesis.

Response to Marchetti et al.

J. Whitaker, B. Jansen, M. Howell, 2021, The Journal of investigative dermatology.

metaTIGER: a metabolic evolution resource

Ivica Letunic, David R. Westhead, John W. Whitaker, 2008, Nucleic Acids Res..

Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells

Matthew D. Schultz, Nicholas E. Propson, Lee E. Edsall, 2013, Cell.