Roshan Rao

发表

Evaluating Protein Transfer Learning with TAPE

John Canny, Pieter Abbeel, Xi Chen, 2019, bioRxiv.

End-to-end learning of multiple sequence alignments with differentiable Smith–Waterman

Alexander M. Rush, Peter K. Koo, Samantha Petti, 2021, bioRxiv.

Single Layers of Attention Suffice to Predict Protein Contacts

Yun S. Song, Peter K. Koo, D. Baker, 2020, bioRxiv.

Language models enable zero-shot prediction of the effects of mutations on protein function

Tom Sercu, Robert Verkuil, Roshan Rao, 2021, bioRxiv.

Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention

Yun S. Song, Peter K. Koo, David Baker, 2021, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

Language models of protein sequences at the scale of evolution enable accurate structure prediction

Zeming Lin, Alexander Rives, B. Hie, 2022, bioRxiv.

Towards generalizable prediction of antibody thermostability using machine learning on sequence and structure features

Jeffrey J. Gray, J. J. Gray, Roshan Rao, 2022, bioRxiv.

Evolutionary-scale prediction of atomic level protein structure with a language model

Zeming Lin, Alexander Rives, Salvatore Candido, 2022, bioRxiv.

Transformer protein language models are unsupervised structure learners

Tom Sercu, Roshan Rao, Joshua Meier, 2020, bioRxiv.

MSA Transformer

John F. Canny, Pieter Abbeel, Tom Sercu, 2021, bioRxiv.

GPU accelerated t-distributed stochastic neighbor embedding

John Canny, Forrest Huang, Roshan Rao, 2019, J. Parallel Distributed Comput..

T-SNE-CUDA: GPU-Accelerated T-SNE and its Applications to Modern Data

John F. Canny, David M. Chan, Forrest Huang, 2018, 2018 30th International Symposium on Computer Architecture and High Performance Computing (SBAC-PAD).

A high-level programming language for generative protein design

Zeming Lin, Alexander Rives, Salvatore Candido, 2022, bioRxiv.

Toward generalizable prediction of antibody thermostability using machine learning on sequence and structure features

Jeffrey J. Gray, Roshan Rao, C. Tinberg, 2023, mAbs.