T. R. Docking

发表

Assemblathon 1: a competitive assessment of de novo short read assembly methods.

Nuno A. Fonseca, Shaun D. Jackman, David R. Kelley, 2011, Genome research.

De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data

Steven J. M. Jones, E. Mardis, I. Birol, 2009, Genome Biology.

Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees

Steven J. M. Jones, Shaun D. Jackman, Jay D. Evans, 2011, BMC Genomics.

Loss of lenalidomide-induced megakaryocytic differentiation leads to therapy resistance in del(5q) myelodysplastic syndrome

A. Karsan, J. Parker, T. R. Docking, 2020, Nature Cell Biology.

Loss of FBXO 11 function establishes a stem cell program in acute 1 myeloid leukemia through dysregulation of the mitochondrial protease 2 LONP 1 3

G. Morin, A. Karsan, J. Parker, 2022 .

Retrotransposon Sequence Variation in Four Asexual Plant Species

T. R. Docking, D. Schoen, M. Elliott, 2006, Journal of Molecular Evolution.

Applications of Bayesian network models in predicting types of hematological malignancies

Amir K. Foroushani, Aly Karsan, Habil Zare, 2018, Scientific Reports.

Control of focal adhesion kinase activation by RUNX1-regulated miRNAs in high-risk AML

A. Karsan, T. R. Docking, V. Akhade, 2023, Leukemia.

Altered microRNA expression links IL6 and TNF-induced inflammaging with myeloid malignancy.

M. Hirst, A. Karsan, J. Parker, 2020, Blood.

Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies

Inanc Birol, Ka Ming Nip, Jenny Q. Qian, 2013, BMC Genomics.

Genomic testing in myeloid malignancy

A. Karsan, T. R. Docking, T. Docking, 2019, International journal of laboratory hematology.

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

Inanç Birol, Dominique Lavenier, Hamidreza Chitsaz, 2013, GigaScience.

A regulatory toolbox of MiniPromoters to drive selective expression in the brain

Steven J. M. Jones, Jing Chen, Debra L. Fulton, 2010, Proceedings of the National Academy of Sciences.

Fixation Effects on Variant Calling in a Clinical Resequencing Panel.

A. Karsan, J. Parker, Lucas Swanson, 2019, The Journal of molecular diagnostics : JMD.

A clinically validated diagnostic second-generation sequencing assay for detection of hereditary BRCA1 and BRCA2 mutations.

Steven J. M. Jones, Richard A. Moore, I. Birol, 2013, The Journal of molecular diagnostics : JMD.

A clinical transcriptome approach to patient stratification and therapy selection in acute myeloid leukemia

Steven J. M. Jones, Richard A. Moore, I. Birol, 2021, Nature Communications.

DNA methylation analysis improves the prognostication of acute myeloid leukemia

A. Karsan, T. R. Docking, Isha D. Mehta, 2021, EJHaem.

Transcriptome and full-length cDNA resources for the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major insect pest of pine forests.

Steven J. M. Jones, I. Birol, Nancy Y. Liao, 2012, Insect biochemistry and molecular biology.

Gene discovery for the bark beetle-vectored fungal tree pathogen Grosmannia clavigera

Steven J. M. Jones, Gordon Robertson, Nancy Y. Liao, 2010, BMC Genomics.

Meis2 as a critical player in MN1-induced leukemia

M. Heuser, A. Karsan, T. R. Docking, 2017, Blood Cancer Journal.

DYNLL1 mis-splicing is associated with replicative genome instability in SF3B1 mutant cells

A. Karsan, T. R. Docking, R. Docking, 2021, bioRxiv.

Sample Tracking Using Unique Sequence Controls.

Thomas Zeng, Richard A. Moore, Irene Li, 2019, The Journal of molecular diagnostics : JMD.

Applications of Bayesian network models in predicting types of hematological malignancies

Amir K. Foroushani, A. Karsan, Gerben Duns, 2018, Scientific Reports.

Loss of lenalidomide-induced megakaryocytic differentiation leads to therapy resistance in del(5q) myelodysplastic syndrome

A. Karsan, J. Parker, T. R. Docking, 2020, Nature Cell Biology.

“iNETgrate”: integrating DNA methylation and gene expression data in a single gene network

A. Karsan, S. Seshadri, T. R. Docking, 2023, Research Square.

Assessing Limit of Detection in Clinical Sequencing.

Richard A. Moore, A. Karsan, Lucas Swanson, 2021, The Journal of molecular diagnostics : JMD.

A clinically validated diagnostic second-generation sequencing assay for detection of hereditary BRCA1 and BRCA2 mutations.

Richard A. Moore, I. Birol, M. Marra, 2013, The Journal of molecular diagnostics : JMD.

Loss of FBXO11 function establishes a stem cell program in acute myeloid leukemia through dysregulation of mitochondrial LONP1

J. Parker, Gerben Duns, T. R. Docking, 2024, bioRxiv.

Integrating DNA methylation and gene expression data in a single gene network using the iNETgrate package

T. R. Docking, Hanie Samimi, Habil Zare, 2023, Scientific reports.