Binghang Liu

发表

Assemblathon 1: a competitive assessment of de novo short read assembly methods.

Nuno A. Fonseca, Shaun D. Jackman, David R. Kelley, 2011, Genome research.

The sequence and de novo assembly of the giant panda genome

Dawei Li, Huanming Yang, Jian Wang, 2010, Nature.

Whole-genome analyses resolve early branches in the tree of life of modern birds

Md. Shamsuzzoha Bayzid, D. Haussler, Huanming Yang, 2014, Science.

The genome of the mesopolyploid crop species Brassica rapa

J. Poulain, Yingrui Li, Ruiqiang Li, 2011, Nature Genetics.

Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph.

Nan Li, Jianying Yuan, Xuesong Hu, 2012, Briefings in functional genomics.

Estimation of genomic characteristics by analyzing k-mer frequency in de novo genome projects

Jianying Yuan, Yujian Shi, Nan Li, 2013, 1308.2012.

De novo assembly of a haplotype-resolved human genome

Jian Wang, Xun Xu, Lars Bolund, 2015, Nature Biotechnology.

A Reference Feature based method for Quantification and Identification of LC-MS based untargeted metabolomics

Dehua Li, Lei Feng, Wei Li, 2020, bioRxiv.

BASE: a practical de novo assembler for large genomes using long NGS reads

Yingrui Li, Ruibang Luo, H. Ting, 2016, BMC Genomics.

Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment

Chris M Rands, C. Ponting, Huanming Yang, 2014, GigaScience.

The sequence and de novo assembly of the giant panda genome

Dawei Li, Huanming Yang, Jian Wang, 2010, Nature.

The oyster genome reveals stress adaptation and complexity of shell formation

Qiang Wang, Ye Yin, Wenjing Fu, 2012, Nature.

Large genome de novo assembly with bi-directional BWT

Binghang Liu, Binghang Liu, 2015 .

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

Jian Wang, Xiangke Liao, Yong Liu, 2012, GigaScience.

An integrated map of genetic variation from 1,092 human genomes

Kenny Q. Ye, Mauricio O. Carneiro, Francisco M. De La Vega, 2012, Nature.

Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution

Ye Yin, Tieyan Liu, Rod A. Wing, 2013, Nature Communications.

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

Inanç Birol, Dominique Lavenier, Hamidreza Chitsaz, 2013, GigaScience.

Insights into salt tolerance from the genome of Thellungiella salsuginea

Jun Wang, Quanfei Huang, Linfeng Yang, 2012, Proceedings of the National Academy of Sciences.

Erratum: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

Siu-Ming Yiu, Xiangke Liao, Shaoliang Peng, 2015, GigaScience.

The sequence and de novo assembly of the giant panda genome

Dawei Li, Huanming Yang, Jian Wang, 2010, Nature.

Title The oyster genome reveals stress adaptation and complexity ofshell formation

ShanWang, Yaoming, Huanming Yang, 2012 .

pIRS: Profile-based Illumina pair-end reads simulator

Zhen Yue, Heng Li, Nan Li, 2012, Bioinform..

MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Peer Bork, Jun Wang, Daniel R. Mende, 2012, PloS one.

COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly

Siu-Ming Yiu, Hao Zhang, Zhenyu Li, 2012, Bioinform..

XY-Meta: A high-efficiency search engine for large scale metabo-lome annotation with accurate FDR estimation.

Binghang Liu, Zhenyu Li, Gong Zhang, 2020, Analytical chemistry.

Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment

Chris M Rands, C. Ponting, Huanming Yang, 2014, GigaScience.

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

David W. Cheung, Jun Wang, Ruibang Luo, 2012, GigaScience.

T E C H N I C a L N O T E Open Access

David W. Cheung, Huanming Yang, Ruibang Luo, 2022 .

A method for quantifying pulmonary Legionella pneumophila infection in mouse lungs by flow cytometry

David W. Cheung, Huanming Yang, Ruibang Luo, 2012, BMC Research Notes.

The sequence and de novo assembly of the giant panda genome

Dawei Li, Huanming Yang, Jian Wang, 2010, Nature.

pIRS: Profile-based Illumina pair-end reads simulator

H. Zhang, Wei Fan, Jianying Yuan, 2012, Bioinform..

Insights into salt tolerance from the genome of Thellungiella salsuginea

Jun Wang, Quanfei Huang, Linfeng Yang, 2012, Proceedings of the National Academy of Sciences.

BASE: a practical de novo assembler for large genomes using long NGS reads

Ruibang Luo, H. Ting, T. Lam, 2016, BMC Genomics.

COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly

H. Zhang, Ruibang Luo, Jianying Yuan, 2012, Bioinform..