V. Kiselev

发表

SC3 - consensus clustering of single-cell RNA-Seq data

Mauricio Barahona, Michael T. Schaub, Martin Hemberg, 2016, Nature Methods.

scmap: projection of single-cell RNA-seq data across data sets

M. Hemberg, V. Kiselev, Andrew Yiu, 2018, Nature Methods.

SC3 - consensus clustering of single-cell RNA-Seq data

M. Schaub, Mauricio Barahona, M. Hemberg, 2016, Nature Methods.

Publisher Correction: Challenges in unsupervised clustering of single-cell RNA-seq data

M. Hemberg, V. Kiselev, T. Andrews, 2019, Nature Reviews Genetics.

Challenges in unsupervised clustering of single-cell RNA-seq data

M. Hemberg, V. Kiselev, T. Andrews, 2019, Nature Reviews Genetics.

Predicting the mutations generated by repair of Cas9-induced double-strand breaks

Andrew R. Bassett, L. Crepaldi, L. Parts, 2018, Nature Biotechnology.

Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro

Lia S. Campos, Ben J. Woodhams, S. Teichmann, 2021, Nature Genetics.

PTEN Regulates PI(3,4)P2 Signaling Downstream of Class I PI3K

Hiroki Nakanishi, Nicolas Le Novère, Phillip T. Hawkins, 2017, Molecular cell.

Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data

Tallulah S Andrews, Vladimir Yu Kiselev, Davis McCarthy, 2020, Nature Protocols.

Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses

M. Bonder, E. Ballestar, S. van Dongen, 2022, Nature Communications.

Statistical Methods for Single‐Cell RNA‐Sequencing

Martin Hemberg, Tallulah S. Andrews, Vladimir Yu. Kiselev, 2019, Handbook of Statistical Genomics.

Perturbations of PIP3 signalling trigger a global remodelling of mRNA landscape and reveal a transcriptional feedback loop

Nicolas Le Novère, Vladimir Yu. Kiselev, N. Novère, 2015, Nucleic acids research.

Challenges in unsupervised clustering of single-cell RNA-seq data

M. Hemberg, V. Kiselev, T. Andrews, 2019, Nature Reviews Genetics.

Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data

M. Hemberg, V. Kiselev, T. Andrews, 2020, Nature Protocols.

Fast searches of large collections of single cell data using scfind

J. T. H. Lee, N. Patikas, V. Y. Kiselev, 2019, Nature Methods.

Tia1 dependent regulation of mRNA subcellular location and translation controls p53 expression in B cells

Manuel D. Díaz-Muñoz, J. Ule, Tomaž Curk, 2017, Nature Communications.

Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench

Vladimir Yu Kiselev, Martin Hemberg, Stijn van Dongen, 2020, bioRxiv.

Single-cell multi-omics analysis of the immune response in COVID-19

Frances E. Muldoon, Nicola K. Wilson, Kenneth G. C. Smith, 2021, Nature Medicine.

Single-cell roadmap of human gonadal development

M. Herbert, S. van Dongen, M. Haniffa, 2021, Nature.

The human body at cellular resolution: the NIH Human Biomolecular Atlas Program

Shila Ghazanfar, Yu Wang, Ziv Bar-Joseph, 2019, Nature.

Comparison of visualization tools for single-cell RNAseq data

Vladimir Yu Kiselev, Ni Huang, Batuhan Cakir, 2020, NAR genomics and bioinformatics.

Comparison of visualisation tools for single-cell RNAseq data

Ni Huang, Pınar Pir, Martin Prete, 2020, bioRxiv.

Single-Cell Atlas of Common Variable Immunodeficiency reveals germinal center-associated epigenetic dysregulation in B cell responses

M. Bonder, E. Ballestar, S. van Dongen, 2021, bioRxiv.

Proliferation Drives Aging-Related Functional Decline in a Subpopulation of the Hematopoietic Stem Cell Compartment

D. Kent, I. Macaulay, M. Hemberg, 2017, Cell reports.

Computational study of electrostatic contribution to membrane dynamics

V. Kiselev, 2011 .

Lateral dynamics of proteins with polybasic domain on anionic membranes: a dynamic Monte-Carlo study.

A. Goryachev, D. Marenduzzo, V. Kiselev, 2011, Biophysical journal.

scmap - A tool for unsupervised projection of single cell RNA-seq data

Martin Hemberg, Vladimir Yu. Kiselev, M. Hemberg, 2017, bioRxiv.

Tia1 dependent regulation of mRNA subcellular location and translation controls p53 expression in B cells

Manuel D. Díaz-Muñoz, J. Ule, N. L. Le Novère, 2017, Nature Communications.

Lateral dynamics of charged lipids and peripheral proteins in spatially heterogeneous membranes: comparison of continuous and Monte Carlo approaches.

A. Goryachev, D. Marenduzzo, V. Kiselev, 2011, The Journal of chemical physics.

SC 3 - consensus clustering of single-cell RNA-Seq data

Mauricio Barahona, M. Hemberg, V. Kiselev, 2015 .

Predicting the mutations generated by repair of Cas9-induced double-strand breaks

Andrew R. Bassett, L. Crepaldi, L. Parts, 2018, Nature Biotechnology.

The human body at cellular resolution: the NIH Human Biomolecular Atlas Program

Paula M. Mabee, Sushma A. Akoju, Jocelyn Y. Kishi, 2019, Nature.

Publisher Correction: Challenges in unsupervised clustering of single-cell RNA-seq data

M. Hemberg, V. Kiselev, T. Andrews, 2019, Nature Reviews Genetics.