L. McIver

发表

Large scale comparison of non-human sequences in human sequencing data.

H. Garner, Hongseok Tae, E. Karunasena, 2014, Genomics.

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

P. Manghi, F. Beghini, C. Huttenhower, 2020, bioRxiv.

Multivariable association discovery in population-scale meta-omics studies

Timothy L. Tickle, Eric A. Franzosa, C. Huttenhower, 2021, bioRxiv.

Global microsatellite content distinguishes humans, primates, animals, and plants.

H. Garner, L. McIver, M. Skinner, 2009, Molecular biology and evolution.

Global microsatellite content potentially distinguishes humans, primates, animals, and plants

H. Garner, L. McIver, M. Skinner, 2009 .

Gut microbiome structure and metabolic activity in inflammatory bowel disease

Eric A. Franzosa, C. Huttenhower, E. Franzosa, 2018, Nature Microbiology.

Species-level functional profiling of metagenomes and metatranscriptomes

Luke R. Thompson, Eric A. Franzosa, C. Huttenhower, 2018, Nature Methods.

Evaluation of microsatellite variation in the 1000 Genomes Project pilot studies is indicative of the quality and utility of the raw data and alignments.

H R Garner, J W Fondon, H. Garner, 2011, Genomics.

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

Kevin S. Bonham, Rob Knight, Antonio Gonzalez, 2019, Nature.

Population analysis of microsatellite genotypes reveals a signature associated with ovarian cancer

H. Garner, L. McIver, Z. Vaksman, 2015, Oncotarget.

Metagenomic assessment of gut microbial communities and risk of severe COVID-19

C. Huttenhower, L. McIver, D. Kwon, 2022, Genome Medicine.

Discovery of bioactive microbial gene products in inflammatory bowel disease

Sean M. Kearney, C. Huttenhower, D. Plichta, 2022, Nature.

‘ Cut from the same cloth ’ : Shared microsatellite variants among cancers link to ectodermal tissues-neural tube and crest cells

Jasmin H. Bavarva, H. Garner, E. Karunasena, 2015 .

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Edoardo Pasolli, P. Manghi, F. Beghini, 2022, bioRxiv.

Supplemental Oxygen Alters the Airway Microbiome in Cystic Fibrosis

L. McIver, K. Whiteson, K. Hanselmann, 2022, mSystems.

Supplemental Oxygen Alters the Airway Microbiome in Cystic Fibrosis

L. McIver, K. Whiteson, K. Hanselmann, 2022, mSystems.

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Francesco Asnicar, Mingxun Wang, Yang Bai, 2019, Nature Biotechnology.

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

William A. Walters, Ahmad Turan Naimey, Lasse Buur Rasmussen, 2019, Nature Biotechnology.

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Francesco Asnicar, Mingxun Wang, Pieter C. Dorrestein, 2018 .

Somatic intronic microsatellite loci differentiate glioblastoma from lower-grade gliomas

Jasmin H. Bavarva, H. Garner, E. Karunasena, 2014, Oncotarget.

High-sensitivity pattern discovery in large, paired multiomic datasets

Yo Sup Moon, C. Huttenhower, L. Waldron, 2021, bioRxiv.

The Dynamic Exome: acquired variants as individuals age

Jasmin H. Bavarva, H. Garner, Hongseok Tae, 2014, Aging.

Gut microbiome structure and metabolic activity in inflammatory bowel disease

C. Huttenhower, E. Franzosa, T. Vatanen, 2018, Nature Microbiology.

EvoCor: a platform for predicting functionally related genes using phylogenetic and expression profiles

Pawel Michalak, Harold R. Garner, W. James Dittmar, 2014, Nucleic Acids Res..

A species independent universal bio-detection microarray for pathogen forensics and phylogenetic classification of unknown microorganisms

Harold R Garner, Lauren McIver, L Garry Adams, 2011, BMC Microbiology.

Overview of the Microbiome Among Nurses study (Micro-N) as an example of prospective characterization of the microbiome within cohort studies

Christine L. Everett, E. Rimm, W. Willett, 2021, Nature Protocols.

bioBakery: a meta’omic analysis environment

Curtis Huttenhower, Levi Waldron, Nicola Segata, 2017, Bioinform..

Comparative Global Gene Expression Profiles of Wild-Type Yersinia pestis CO92 and Its Braun Lipoprotein Mutant at Flea and Human Body Temperatures

H. Garner, L. McIver, J. Sha, 2010, Comparative and functional genomics.

Microsatellite genotyping reveals a signature in breast cancer exomes

H. R. Garner, H. Garner, E. Karunasena, 2014, Breast Cancer Research and Treatment.

Dynamics of metatranscription in the inflammatory bowel disease gut microbiome

C. Huttenhower, E. Franzosa, H. Vlamakis, 2018, Nature Microbiology.

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

Colin J. Brislawn, R. White, C. Huttenhower, 2019, Nature.

Author Correction: Gut microbiome structure and metabolic activity in inflammatory bowel disease

C. Huttenhower, E. Franzosa, T. Vatanen, 2019, Nature Microbiology.

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Francesco Asnicar, Mingxun Wang, Yang Bai, 2019, Nature Biotechnology.

Divergence of Drosophila melanogaster repeatomes in response to a sharp microclimate contrast in Evolution Canyon, Israel

Young Bun Kim, E. Nevo, H. Garner, 2014, Proceedings of the National Academy of Sciences.

A long AAAG repeat allele in the 5′ UTR of the ERR-γ gene is correlated with breast cancer predisposition and drives promoter activity in MCF-7 breast cancer cells

H. Garner, L. McIver, D. Boothman, 2011, Breast Cancer Research and Treatment.

Sporadic breast cancer patients' germline DNA exhibit an AT‐rich microsatellite signature

J. Minna, I. Hoeschele, H. Garner, 2011, Genes, chromosomes & cancer.

A reproducible approach to high-throughput biological data acquisition and integration

Levi Waldron, Daniela Börnigen, Curtis Huttenhower, 2015, PeerJ.

Population-scale analysis of human microsatellites reveals novel sources of exonic variation.

H. Garner, J. Fondon, L. McIver, 2013, Gene.

Transcriptional profile of isoproterenol-induced cardiomyopathy and comparison to exercise-induced cardiac hypertrophy and human cardiac failure

Mounir Errami, Harold R Garner, H. Garner, 2009, BMC Physiology.

Nicotine and oxidative stress induced exomic variations are concordant and overrepresented in cancer-associated genes

Jasmin H. Bavarva, H. Garner, Hongseok Tae, 2014, Oncotarget.

Species-level functional profiling of metagenomes and metatranscriptomes

Luke R. Thompson, C. Huttenhower, N. Segata, 2018, Nature Methods.

Comparison of genome diversity of Brucella spp. field isolates using Universal Bio-signature Detection Array and whole genome sequencing reveals limitations of current diagnostic methods.

S. Shallom, H. Garner, Hongseok Tae, 2012, Gene.

Metagenomics of the Gut Microbiome in Parkinson's Disease: Prodromal Changes

C. Huttenhower, L. McIver, A. Ascherio, 2023, Annals of neurology.

Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes

C. Huttenhower, M. Jackson, J. Faith, 2023, Science Translational Medicine.

Transcriptional profile of isoproterenol-induced cardiomyopathy and comparison to exercise-induced cardiac hypertrophy and human cardiac failure

H. Garner, L. McIver, M. Skinner, 2009, BMC Physiology.

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Edoardo Pasolli, P. Manghi, F. Beghini, 2023, Nature Biotechnology.

The Dynamic Exome: acquired variants as individuals age

Jasmin H. Bavarva, H. Garner, Hongseok Tae, 2014, Aging.

Population-scale analysis of human microsatellites reveals novel sources of exonic variation.

H. Garner, J. Fondon, L. McIver, 2013, Gene.

Genomic leftovers: identifying novel microsatellites, over-represented motifs and functional elements in the human genome

H. Garner, Hongseok Tae, L. McIver, 2016, Scientific Reports.

Distributed under Creative Commons Cc-by 4.0 a Reproducible Approach to High-throughput Biological Data Acquisition and Integration

C. Huttenhower, L. Waldron, E. Franzosa, 2022 .