Roland Arnold

发表

Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli

Gary D. Bader, Gary D Bader, Ashkan Golshani, 2015, Bioinform..

Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in Escherichia coli

Philip M. Kim, A. Emili, James Vlasblom, 2014, PLoS genetics.

The binary protein-protein interaction landscape of Escherichia coli

P. Uetz, A. Emili, James Vlasblom, 2014, Nature Biotechnology.

Genetic Interaction Maps in Escherichia coli Reveal Functional Crosstalk among Cell Envelope Biogenesis Pathways

A. Emili, James Vlasblom, J. Parkinson, 2011, PLoS genetics.

Sequence-Based Prediction of Type III Secreted Proteins

Thomas Rattei, Roland Arnold, Hans-Werner Mewes, 2009, PLoS pathogens.

Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes

Tony Pawson, Roland Arnold, Rakesh Joshi, 2014, Proceedings of the National Academy of Sciences.

Proteome‐wide analysis of phospho‐regulated PDZ domain interactions

P. Güntert, Roland Arnold, Celestine N. Chi, 2018, Molecular systems biology.

Molecular recognition determinants for type IV secretion of diverse families of conjugative relaxases

T. Rattei, Roland Arnold, K. Gruber, 2010, Molecular microbiology.

Proteome-wide analysis of phospho-regulated PDZ domain interactions through phosphomimetic proteomic peptide phage display

Roland Arnold, Celestine N. Chi, Y. Ivarsson, 2017, bioRxiv.

Direct Transcriptional Consequences of Somatic Mutation in Breast Cancer

A. Børresen-Dale, M. Stratton, P. Campbell, 2016, Cell reports.

The Genome of the Amoeba Symbiont “Candidatus Amoebophilus asiaticus” Reveals Common Mechanisms for Host Cell Interaction among Amoeba-Associated Bacteria

M. Wagner, T. Rattei, Roland Arnold, 2009, Journal of bacteriology.

Targeting effectors: the molecular recognition of Type III secreted proteins.

T. Rattei, Roland Arnold, Andre Jehl, 2010, Microbes and infection.

probeCheck – a central resource for evaluating oligonucleotide probe coverage and specificity

M. Wagner, T. Rattei, Roland Arnold, 2008, Environmental Microbiology.

SIMAP—the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage

Thomas Rattei, Roland Arnold, Hans-Werner Mewes, 2013, Nucleic Acids Res..

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

Damian Szklarczyk, Christian von Mering, Peer Bork, 2011, Nucleic Acids Res..

SIMAP—a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters

Stefan Götz, Thomas Rattei, Roland Arnold, 2009, Nucleic Acids Res..

Combined hereditary and somatic mutations of replication error repair genes result in rapid onset of ultra-hypermutated cancers

Roland Arnold, Richard G Grundy, Daniele Merico, 2015, Nature Genetics.

A negative genetic interaction map in isogenic cancer cell lines reveals cancer cell vulnerabilities

Roland Arnold, Laurence Pelletier, Andrew Emili, 2013, Molecular systems biology.

EffectiveDB—updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems

Thomas Nussbaumer, Thomas Rattei, Roland Arnold, 2015, Nucleic Acids Res..

MIPS: analysis and annotation of proteins from whole genomes in 2005

Dmitrij Frishman, Roland Arnold, Hans-Werner Mewes, 2005, Nucleic Acids Res..

MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome

Roland Arnold, Hans-Werner Mewes, Heiko Schoof, 2002, Nucleic Acids Res..

PAT: predictor for structured units and its application for the optimization of target molecules for the generation of synthetic antibodies

Roland Arnold, Jouhyun Jeon, Joan Teyra, 2016, BMC Bioinformatics.

Effective—a database of predicted secreted bacterial proteins

Thomas Rattei, Roland Arnold, Marc-André Jehl, 2010, Nucleic Acids Res..

Gepard: a rapid and sensitive tool for creating dotplots on genome scale

Thomas Rattei, Roland Arnold, Jan Krumsiek, 2007, Bioinform..

PEDANT covers all complete RefSeq genomes

Dmitrij Frishman, Thomas Rattei, Roland Arnold, 2008, Nucleic Acids Res..

SIMAP—structuring the network of protein similarities

Thomas Rattei, Roland Arnold, Hans-Werner Mewes, 2007, Nucleic Acids Res..

Thomas Rattei, Roland Arnold, Hans-Werner Mewes, 2006, Nucleic Acids Res..

Thomas Rattei, Roland Arnold, Hans-Werner Mewes, 2005, ECCB/JBI.

Methods Identifying Protein Domains and Their Boundaries

Philip M. Kim, T. Braun, Jouhyun Jeon, 2022 .

Computational analysis of interactomes: Current and future perspectives for bioinformatics approaches to model the host–pathogen interaction space

Roland Arnold, Kurt Boonen, Philip M. Kim, 2012, Methods.

Bacteria Interaction among Amoeba-associated Cell Reveals Common Mechanisms for Host the Genome of the Amoeba Symbiont '' Supplemental Material

M. Wagner, T. Rattei, Roland Arnold, 2022 .

Genome analysis Advance Access publication February 18, 2011 B2G-FAR, a species-centered GO annotation repository

Joaquín Dopazo, Thomas Rattei, Ana Conesa, 2022 .

Cell cycle regulation of mitochondrial protein import revealed by genome-scale pooled bimolecular fluorescence complementation screening

Philip M. Kim, C. Misquitta, J. Moffat, 2019, bioRxiv.

Proteomic peptide phage display uncovers novel interactions of the PDZ1‐2 supramodule of syntenin

Philip M. Kim, Roland Arnold, S. Sidhu, 2016, FEBS letters.

PAT: predictor for structured units and its application for the optimization of target molecules for the generation of synthetic antibodies

Philip M. Kim, T. Braun, Jouhyun Jeon, 2016, BMC Bioinformatics.

Functional analysis of the finO distal region of plasmid R1.

T. Rattei, Roland Arnold, E. Zechner, 2011, Plasmid.

Combined hereditary and somatic mutations of replication error repair genes result in rapid onset of ultra-hypermutated cancers

S. Scherer, D. Merico, P. Nathan, 2015, Nature Genetics.

probeCheck – a central resource for evaluating oligonucleotide probe coverage and specificity

Thomas Rattei, Roland Arnold, Michael Wagner, 2008, Environmental microbiology.