T. Baba

发表

Large-scale identification of protein-protein interaction of Escherichia coli K-12.

S. Kanaya, H. Mori, M. Tomita, 2006, Genome research.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

H. Mori, M. Tomita, B. Wanner, 2006, Molecular systems biology.

Maturation pathway of Escherichia coli heat-stable enterotoxin I: requirement of DsbA for disulfide bond formation

T. Baba, K. Okamoto, H. Yamanaka, 1994, Journal of bacteriology.

Genome Structure of the Legume, Lotus japonicus

H. Mori, S. Tabata, Yasukazu Nakamura, 2008, DNA research : an international journal for rapid publication of reports on genes and genomes.

Global metabolic response of Escherichia coli to gnd or zwf gene-knockout, based on 13C-labeling experiments and the measurement of enzyme activities

H. Mori, T. Baba, K. Shimizu, 2004, Applied Microbiology and Biotechnology.

Analysis of Escherichia coli anaplerotic metabolism and its regulation mechanisms from the metabolic responses to altered dilution rates and phosphoenolpyruvate carboxykinase knockout

H. Mori, T. Baba, K. Shimizu, 2003, Biotechnology and bioengineering.

Analysis of metabolic and physiological responses to gnd knockout in Escherichia coli by using C-13 tracer experiment and enzyme activity measurement.

H. Mori, T. Baba, K. Shimizu, 2003, FEMS microbiology letters.

Responses of theCentral Metabolism in Escherichia coli to PhosphoglucoseIsomerase and Glucose-6-Phosphate DehydrogenaseKnockouts

H. Mori, T. Baba, K. Shimizu, 2003, Journal of bacteriology.

Hd1, a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene CONSTANS

M. Yano, T. Baba, Takuji Sasaki, 2000, Plant Cell.

The genome sequence and structure of rice chromosome 1

T. Gojobori, K. Waki, Mari Nakamura, 2002, Nature.

Microflorae of aquatic moss pillars in a freshwater lake, East Antarctica, based on fatty acid and 16S rRNA gene analyses

T. Abe, Y. Kohara, T. Baba, 2012, Polar Biology.

Experimental and Computational Assessment of Conditionally Essential Genes in Escherichia coli

Andrew R. Joyce, Bernhard Ø. Palsson, Jennifer L. Reed, 2006, Journal of bacteriology.

A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map.

K. Isono, H. Mori, H. Kasai, 1996, DNA research : an international journal for rapid publication of reports on genes and genomes.

A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map (supplement).

K. Isono, H. Mori, H. Kasai, 1996, DNA Research.

A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map.

K. Isono, H. Mori, H. Kasai, 1996, DNA research : an international journal for rapid publication of reports on genes and genomes.

Effect of zwf gene knockout on the metabolism of Escherichia coli grown on glucose or acetate.

Hirotada Mori, Kazuyuki Shimizu, Tomoya Baba, 2004, Metabolic engineering.

Batch-Learning Self-Organizing Map Identifies Horizontal Gene Transfer Candidates and Their Origins in Entire Genomes

T. Abe, A. Toyoda, T. Baba, 2020, Frontiers in Microbiology.

Plant growth and sensing using high-brightness white and red light-emitting diodes

T. Baba, T. Yanagi, K. Okamoto, 2000, CLEO 2000.

The International Rice Genome Sequencing Project: progress and prospects.

Gurdev S. Khush, B. Hardy, Tomoya Baba, 2001 .

Construction and characterization of rice genomic libraries: PAC library of Japonica variety, Nipponbare and BAC library of Indica variety, Kasalath.

P. Jong, T. Baba, Takuji Sasaki, 2000 .

A physical map with yeast artificial chromosome (YAC) clones covering 63% of the 12 rice chromosomes.

T. Sasaki, T. Baba, Takuji Sasaki, 2001, Genome.

, Robert Escherichia coli Genes in Assessment of Conditionally Essential Experimental and Computational

B. Palsson, H. Mori, J. Reed, 2006 .

MicroArray Analysis of Escherichia coli K-12 : An in silico Approach

K. Kurokawa, S. Kanaya, H. Mori, 2005 .

Minimal Genomes: How Many Genes Does a Cell Require To Be Viable

K. Kurokawa, T. Oshima, T. Baba, 2020, Journal of Geography (Chigaku Zasshi).

Essential cellular modules for the proliferation of the primitive cell

K. Kurokawa, T. Oshima, T. Baba, 2016, Geoscience Frontiers.

The applications of systematic in-frame, single-gene knockout mutant collection of Escherichia coli K-12.

H. Mori, B. Wanner, T. Baba, 2008, Methods in molecular biology.

The whole blood transcriptional regulation landscape in 465 COVID-19 infected samples from Japan COVID-19 Task Force

M. Kanai, Y. Okada, S. Fuke, 2022, Nature Communications.

Complete Genome Sequence of Aurantimicrobium minutum Type Strain KNCT, a Planktonic Ultramicrobacterium Isolated from River Water

A. Fujiyama, A. Toyoda, Yasukazu Nakamura, 2016, Genome Announcements.

Identification andCharacterization ofClustered Genesfor Thermostable Xylan-Degrading Enzymes,3-Xylosidase andXylanase, ofBacillus stearothermophilus 21

T. Baba, T. Nanmori, R. Shinke, 1994 .

Diversity of RuBisCO gene responsible for CO2 fixation in an Antarctic moss pillar

T. Abe, Y. Kohara, T. Baba, 2012, Polar Biology.

Eukaryotic phylotypes in aquatic moss pillars inhabiting a freshwater lake in East Antarctica, based on 18S rRNA gene analysis

T. Abe, Y. Kohara, T. Baba, 2012, Polar Biology.

Aurantimicrobium minutum gen. nov., sp. nov., a novel ultramicrobacterium of the family Microbacteriaceae, isolated from river water.

T. Baba, H. Niki, T. Naganuma, 2015, International journal of systematic and evolutionary microbiology.

Identification and characterization of clustered genes for thermostable xylan-degrading enzymes, beta-xylosidase and xylanase, of Bacillus stearothermophilus 21

T. Baba, T. Nanmori, R. Shinke, 1994, Applied and environmental microbiology.

Identification of likely genes on chromosome VI of Saccharomyces cerevisiae by correlating transcripts and nucleotide sequence data.

K. Isono, T. Baba, 1997, DNA research : an international journal for rapid publication of reports on genes and genomes.

Environmental dependency of gene knockouts on phenotype microarray analysis in Escherichia coli.

Yukako Tohsato, Hirotada Mori, Masahiro Ito, 2010, Journal of bioinformatics and computational biology.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Hirotada Mori, Katsumi Isono, 2006, Molecular systems biology.

Glutathione production by efficient ATP-regenerating Escherichia coli mutants.

Hirotada Mori, Kiyotaka Y Hara, Tomoya Baba, 2009, FEMS microbiology letters.

Systematic genome-wide scanning for genes involved in ATP generation in Escherichia coli.

T. Baba, K. Hara, Mikito Ito, 2009, Metabolic engineering.

Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations

Pei Yee Ho, H. Mori, Nobuyoshi Ishii, 2007, Science.

Rice genomics: current status of genome sequencing.

M. Yano, T. Sasaki, T. Baba, 2001, Novartis Foundation symposium.

Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments.

H. Mori, M. Tomita, T. Nishi, 2010, Molecular bioSystems.

Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan

M. Kanai, Y. Okada, S. Fuke, 2021, medRxiv.

Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays.

Hirotada Mori, Tomoya Baba, T. Baba, 2005, Metabolic engineering.

Microflorae of aquatic moss pillars in a freshwater lake, East Antarctica, based on fatty acid and 16S rRNA gene analyses

T. Abe, Y. Kohara, T. Baba, 2012, Polar Biology.

Escherichia coli proteome chips for detecting protein–protein interactions

H. Mori, T. Baba, N. Doi, 2006, Proteomics.

Antisense expression of a rice sucrose transporter OsSUT1 in rice (Oryza sativa L.).

S. Yamamoto, T. Baba, N. Aoki, 2001, Plant & cell physiology.

Genome sequence and overview of Oligoflexus tunisiensis Shr3T in the eighth class Oligoflexia of the phylum Proteobacteria

Yasukazu Nakamura, T. Baba, T. Fujisawa, 2016, Standards in Genomic Sciences.

Construction and characterization of rice genomic libraries, PAC library of japonica variety Nipponbare, and BAC library of indiea variety Kasalath

T. Baba, 2000 .

Identification of essential genes and synthetic lethal gene combinations in Escherichia coli K-12.

Hirotada Mori, Yuta Otsuka, Rikiya Takeuchi, 2015, Methods in molecular biology.

Ribosome binding proteins YhbH and YfiA have opposite functions during 100S formation in the stationary phase of Escherichia coli

H. Mori, T. Baba, C. Wada, 2005, Genes to cells : devoted to molecular & cellular mechanisms.

Systematic characterization of Escherichia coli genes/ORFs affecting biofilm formation.

K. Isono, H. Mori, T. Baba, 2003, FEMS microbiology letters.

Construction of a contiguous 874-kb sequence of the Escherichia coli -K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features.

K. Isono, H. Mori, K. Makino, 1997, DNA research : an international journal for rapid publication of reports on genes and genomes.

A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map.

H. Mori, K. Makino, T. Inada, 1996, DNA research : an international journal for rapid publication of reports on genes and genomes.

The construction of systematic in-frame, single-gene knockout mutant collection in Escherichia coli K-12.

H. Mori, T. Baba, 2008, Methods in molecular biology.

Comparative Analysis of argK-tox Clusters and Their Flanking Regions in Phaseolotoxin-Producing Pseudomonas syringae Pathovars

S. Kanaya, H. Mori, T. Baba, 2006, Journal of Molecular Evolution.

High-throughput fluorescence labelling of full-length cDNA products based on a reconstituted translation system.

H. Mori, T. Baba, Takashi Ito, 2006, Journal of biochemistry.

Direct PCR amplification of the 16S rRNA gene from single microbial cells isolated from an Antarctic iceberg using laser microdissection microscopy

T. Baba, H. Niki, K. Yanagihara, 2011 .

Identification of the Two Missing Bacterial Genes Involved in Thiamine Salvage: Thiamine Pyrophosphokinase and Thiamine Kinase

Olga Vassieva, Hirotada Mori, Tadhg P. Begley, 2004, Journal of bacteriology.

Disulfide bond formation and secretion of Escherichia coli heat-stable enterotoxin II

T. Baba, K. Okamoto, H. Yamanaka, 1995, Journal of bacteriology.

Genome sequence and overview of Oligoflexus tunisiensis Shr3T in the eighth class Oligoflexia of the phylum Proteobacteria

Yasukazu Nakamura, T. Baba, T. Fujisawa, 2016, Standards in genomic sciences.

Evaluation of the Prediction of Gene Knockout Effects by Minimal Pathway Enumeration

Katsumi Inoue, Takehide Soh, Toshihiko Shiroishi, 2012 .

A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map (supplement).

H. Mori, K. Makino, T. Inada, 1996, DNA Research.

Construction of a contiguous 874-kb sequence of the Escherichia coli K-12 genome corresponding to the 50.0-68.8 min on the linkage map and analysis of its sequence features (supplement).

K. Isono, H. Mori, K. Makino, 1997, DNA Research.