S. Pakala

发表

The binary protein-protein interaction landscape of Escherichia coli

P. Uetz, A. Emili, James Vlasblom, 2014, Nature Biotechnology.

Comparative transcriptomics and metabolomics in a rhesus macaque drug administration study

Mark P. Styczynski, Jessica C. Kissinger, Karan Uppal, 2014, Front. Cell Dev. Biol..

High-Quality Genome Assembly and Annotation for Plasmodium coatneyi, Generated Using Single-Molecule Real-Time PacBio Technology

M. Galinski, J. Barnwell, S. Pakala, 2016, Genome Announcements.

PacBio assembly of a Plasmodium knowlesi genome sequence with Hi-C correction and manual annotation of the SICAvar gene family

Jeremy D. DeBarry, F. Ay, M. Galinski, 2017, Parasitology.

Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability

W. Nierman, G. Payne, O. Abolude, 2012, BMC Genomics.

Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus’s Role in Virulence

W. Nierman, S. Pakala, V. Joardar, 2015, PLoS pathogens.

Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3.

R. Dean, W. Nierman, S. Shabalina, 2014, FEMS microbiology letters.

Cross-reaction between Formosan termite (Coptotermes formosanus) proteins and cockroach allergens

S. Pakala, T. Khurana, C. Grimm, 2017, PloS one.

Mucosal gene expression in response to SARS-CoV-2 is associated with early viral load

S. Rajagopala, S. Mallal, S. Pakala, 2022, bioRxiv.

COVID‐19 severity from Omicron and Delta SARS‐CoV‐2 variants

Jonathan E. Schmitz, W. Self, S. Mallal, 2022, Influenza and other respiratory viruses.

DC ENaC-Dependent Inflammasome Activation Contributes to Salt-Sensitive Hypertension

T. Ikizler, S. Pakala, Q. Sheng, 2022, Circulation research.

Species-specific transcriptomic changes upon respiratory syncytial virus infection in cotton rats

S. Yooseph, S. Rajagopala, S. Pakala, 2022, Scientific Reports.

Metatranscriptomics to characterize respiratory virome, microbiome, and host response directly from clinical samples

S. Yooseph, S. Rajagopala, S. Pakala, 2020, Cell reports methods.

MaHPIC malaria systems biology data from Plasmodium cynomolgi sporozoite longitudinal infections in macaques

Mark P. Styczynski, Elizabeth D. Trippe, E. Voit, 2022, Scientific Data.

Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability

W. Nierman, G. Payne, S. Pakala, 2012, BMC Genomics.

Suppression subtractive hybridization and comparative expression of a pore-forming toxin and glycosyl hydrolase genes in Rhizoctonia solani during potato sprout infection

S. Pakala, M. Cubeta, S. Jabaji, 2015, Molecular Genetics and Genomics.

Draft Genome Sequence of the Plant-Pathogenic Soil Fungus Rhizoctonia solani Anastomosis Group 3 Strain Rhs1AP

R. Dean, W. Nierman, S. Pakala, 2014, Genome Announcements.

Suppression subtractive hybridization and comparative expression of a pore-forming toxin and glycosyl hydrolase genes in Rhizoctonia solani during potato sprout infection

S. Pakala, M. Cubeta, S. Jabaji, 2014, Molecular Genetics and Genomics.

Perturbations in small molecule synthesis uncovers an iron-responsive secondary metabolite network in Aspergillus fumigatus

W. Nierman, S. Pakala, F. Schroeder, 2014, Front. Microbiol..

Distinct amino acid and lipid perturbations characterize acute versus chronic malaria.

Dean P. Jones, Jeremy D. DeBarry, M. Galinski, 2019, JCI insight.

Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques

Mark P. Styczynski, Jeremy D. DeBarry, M. Galinski, 2017, Malaria Journal.

Generation of a Novel SARS-CoV-2 Sub-genomic RNA Due to the R203K/G204R Variant in Nucleocapsid: Homologous Recombination has Potential to Change SARS-CoV-2 at Both Protein and RNA Level

M. John, I. James, S. Mallal, 2021, Pathogens & immunity.

Generation of a novel SARS-CoV-2 sub-genomic RNA due to the R203K/G204R variant in nucleocapsid: homologous recombination has potential to change SARS-CoV-2 at both protein and RNA level

M. John, I. James, S. Mallal, 2020, bioRxiv.

Three adjacent nucleotide changes spanning two residues in SARS-CoV-2 nucleoprotein: possible homologous recombination from the transcription-regulating sequence

M. John, S. Mallal, S. Pakala, 2020 .

Ligation‐based assay for variant typing without sequencing: Application to SARS‐CoV‐2 variants of concern

S. Pakala, F. Haselton, M. Shilts, 2022, Influenza and other respiratory viruses.

Large-Scale Transcriptional Response to Hypoxia in Aspergillus fumigatus Observed Using RNAseq Identifies a Novel Hypoxia Regulated ncRNA

W. Nierman, S. Pakala, B. Barker, 2014, Mycopathologia.

CD4+ T cells expressing CX3CR1, GPR56, with variable CD57 are associated with cardiometabolic diseases in persons with HIV

S. Mallal, S. Pakala, E. Newell, 2023, Frontiers in Immunology.

Structural analysis of the Rhizoctonia solani agglutinin reveals a domain‐swapping dimeric assembly

W. Nierman, S. Pakala, D. Leonidas, 2013, The FEBS journal.

Molecular signature of postmortem lung tissue from COVID-19 patients suggests distinct trajectories driving mortality

S. Rajagopala, P. Mathur, C. Sarkar, 2021, bioRxiv.

Malaria disrupts the rhesus macaque gut microbiome

Jeremy D. DeBarry, M. Galinski, S. Pakala, 2023, Frontiers in Cellular and Infection Microbiology.

Distinct CD3+ CD14+ T Cell-Monocytes are dynamic complexes that harbor HIV and are increased with glucose intolerance

S. Mallal, S. Pakala, S. Gianella, 2023, bioRxiv.

Transcriptomic profiling of Paulownia elongata in response to heat stress

S. Pakala, Chhandak Basu, Kerry K. Cooper, 2021 .

A Positively Selected fur-R88H Mutation Enhances Helicobacter pylori Fitness in a High-Salt Environment and Alters Fur-Dependent Regulation of Gene Expression

M. S. McClain, T. Cover, S. Pakala, 2023, Infection and immunity.

Mucosal Gene Expression in Response to SARS-CoV-2 Is Associated with Viral Load

S. Rajagopala, S. Mallal, S. Pakala, 2023, Journal of virology.

NCBI’s Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements

Ryan Shean, Matthew Miller, Carl Leubsdorf, 2019, Genes.

Nearly Complete Genome Sequences of 17 Enterovirus D68 Strains from Kansas City, Missouri, 2018

S. Rajagopala, S. Pakala, F. Hassan, 2019, Microbiology Resource Announcements.

Large-Scale Transcriptional Response to Hypoxia in Aspergillus fumigatus Observed Using RNAseq Identifies a Novel Hypoxia Regulated ncRNA

W. Nierman, S. Pakala, B. Barker, 2014, Mycopathologia.