Xuejian Xiong

发表

Genetic Interaction Maps in Escherichia coli Reveal Functional Crosstalk among Cell Envelope Biogenesis Pathways

A. Emili, James Vlasblom, J. Parkinson, 2011, PLoS genetics.

Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality

J. Parkinson, J. Danska, Xuejian Xiong, 2016, Microbiome.

Panorama of ancient metazoan macromolecular complexes

Greg W. Clark, Graham L. Cromar, A. Emili, 2015, Nature.

Correction: Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis

G. Weinstock, J. Parkinson, E. Sodergren, 2015, PloS one.

Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis

John Parkinson, Ellen Li, Daniel N. Frank, 2015, PloS one.

A Map of Human Mitochondrial Protein Interactions Linked to Neurodegeneration Reveals Molecular Determinants of Redox Homeostasis and NF- κ B Signaling

Gary D Bader, Nichollas E. Scott, Haiyuan Yu, 2017 .

Analyzing Metabolic Pathways in Microbiomes.

J. Parkinson, Xuejian Xiong, Mobolaji Adeolu, 2018, Methods in molecular biology.

Toxoplasma infection in male mice alters dopamine-sensitive behaviors and host gene expression patterns associated with neuropsychiatric disease

Graham L. Cromar, J. Parkinson, P. Frankland, 2022, PLoS neglected tropical diseases.

Systematic profiling of the chicken gut microbiome reveals dietary supplementation with antibiotics alters expression of multiple microbial pathways with minimal impact on community structure

J. Parkinson, Xuejian Xiong, D. Guttman, 2022, Microbiome.

DAnCER: Disease-Annotated Chromatin Epigenetics Resource

Andrei L. Turinsky, Zhaolei Zhang, Shoshana J. Wodak, 2010, Nucleic Acids Res..

Toward a systems level view of the ECM and related proteins: A framework for the systematic definition and analysis of biological systems

Sylvie Ricard-Blum, John Parkinson, Xuejian Xiong, 2012, Proteins.

The Modular Organization of Protein Interactions in Escherichia coli

Chong Su, John Parkinson, Xuejian Xiong, 2009, PLoS Comput. Biol..

Toxoplasma infection alters dopamine-sensitive behaviors and host gene expression patterns associated with neuropsychiatric disease

Graham L. Cromar, J. Parkinson, P. Frankland, 2021, bioRxiv.

Generation and Analysis of a Mouse Intestinal Metatranscriptome through Illumina Based RNA-Sequencing

John Parkinson, Daniel N. Frank, Xuejian Xiong, 2012, PloS one.

New Tricks for “Old” Domains: How Novel Architectures and Promiscuous Hubs Contributed to the Organization and Evolution of the ECM

Zhaolei Zhang, Ka-Chun Wong, John Parkinson, 2014, Genome biology and evolution.

Comparison of substrate specificity of the ubiquitin ligases Nedd4 and Nedd4-2 using proteome arrays

John Parkinson, Xuejian Xiong, James Wasmuth, 2009, Molecular systems biology.

ToxoNet: A high confidence map of protein-protein interactions in Toxoplasma gondii reveals novel virulence factors implicated in host cell invasion

L. S. Swapna, A. Emili, J. Parkinson, 2021, bioRxiv.

A Map of Human Mitochondrial Protein Interactions Linked to Neurodegeneration Reveals New Mechanisms of Redox Homeostasis and NF-κB Signaling.

Gary D Bader, Nichollas E. Scott, Haiyuan Yu, 2017, Cell systems.

AMap of HumanMitochond rial Protein Interactions Linked toNeurodegenerationRevealsNewMechanisms of Redox Homeostasis and NFk B Signaling Graphical

Gary D Bader, Nichollas E. Scott, Haiyuan Yu, 2017 .

The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses

Andrei L. Turinsky, Zhaolei Zhang, John Parkinson, 2010, Proteins.

Expanding the Landscape of Chromatin Modification (CM)-Related Functional Domains and Genes in Human

Andrei L. Turinsky, Zhaolei Zhang, Shoshana J. Wodak, 2010, PloS one.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Olga Kagan, John Parkinson, Edward M. Marcotte, 2015, Data in brief.

Identification of a Functional Connectome for Long-Term Fear Memory in Mice

Natasa Kovacevic, Anthony Randal McIntosh, Paul W. Frankland, 2013, PLoS Comput. Biol..

Perilipin-2 modulates dietary fat-induced microbial global gene expression profiles in the mouse intestine

J. Parkinson, J. McManaman, Xuejian Xiong, 2017, Microbiome.

MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

J. Parkinson, Xuejian Xiong, J. Ang, 2021, bioRxiv.

PhyloPro2.0: a database for the dynamic exploration of phylogenetically conserved proteins and their domain architectures across the Eukarya

L. S. Swapna, John Parkinson, Xuejian Xiong, 2016, Database J. Biol. Databases Curation.

Comparison of substrate specificity of the ubiquitin ligases Nedd4 and Nedd4-2 using proteome arrays

Xuejian Xiong, Avinash K. Persaud, C. Fladd, 2009, Molecular systems biology.

ToxoNet: A high confidence map of protein-protein interactions in Toxoplasma gondii

L. S. Swapna, Xuejian Xiong, John Parkinson, 2024, PLoS computational biology.